NO07G03750.1, NO07G03750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03750.1
Unique NameNO07G03750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1752
Alignment locationchr7:1052833..1054584 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1052833..1054584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G03750.1 vs.
Match: EWM26978.1 (Phosphatidylinositol-glycan biosynthesis class S protein [Nannochloropsis gaditana])

HSP 1 Score: 282.7 bits (722), Expect = 2.500e-72
Identity = 181/413 (43.83%), Postives = 242/413 (58.60%), Query Frame = 0
Query:    1 MAGTRLLTQLWFTAGIGLLAPFAFWSAWWPVGFKSVTLPPLPLSLQKPHTPFPLTLHVLLPYDHHLHEGTEVEIESIRVVWTTISIPMEG---KDESLLVQARRLLQEHAPGDDDERLLQYWLVLLPTPQPASSLASSSSS---SNITWRLQERFGYT---SNSINIASRACHDLAQALSHVIFNPPPSHLISLQRNVQLALLSQDASHRFCKWNVSRLLDHYLNPLFHQLAPLTTLLPSLQLLPFGTLLPPSTTQRHGHRIPTSALIGMEGYWNENLLPPSLPFVGEGMGEPVPPLRVIFYCPATEEEQRMVFVADEHKGGEDAPSSSS----SIGVELEDWGGMMVLQTNNHSTSSPPSSSSSSSSSSSSSSSSSPPFYSFLSDANYRSITTFLKILLRHSLGFPSSLPPS 401
            MAGTRL TQLWF AG+ +LAPFAF  AWW  GF+ V+ P +P SL+ P  PF   L VL+ +D       E+E++  RV    +S        ++E+L   ARR + E+A  + D  +LQYWLVLLP+  P SS  + SS+   S ITWRL+ERFGY    ++  +I  +A  +L+ A + + F P  S  + L R +QL L+SQDAS RFC+WN + LL+ +LNPL   L PLTT LPSLQLLP+GTLLP  T   HG+ +P S L G+  YW   LLPPSL  V    G    PLR +FYCPA+  EQ + F+ D  +G     ++SS    S G+E+  WGG +VL   N S SSPPS+    + +             FL++A Y  I +FL+ +LR +   PS L PS
Sbjct:    1 MAGTRLWTQLWFLAGVVVLAPFAFRLAWWQEGFERVSFPDIPSSLRPPGAPFLPFLVVLVGHDFS-SSLMEMEVDDFRVALKRVSFIAASSGQENETLESFARRAVAENAAPEMDANMLQYWLVLLPSSLPMSSTEADSSTPSISGITWRLEERFGYARRGNDDHSIIQQAGRELSHARAQISFRPATSTPLPLAREIQLTLVSQDASVRFCRWNRAHLLNRHLNPLVRALIPLTTFLPSLQLLPYGTLLPVQTKHAHGYPLPLSTLTGIRQYWETTLLPPSLSLVAT-PGPMASPLRFLFYCPASSSEQSLAFMDDVEEGLRGTSNASSHHAVSTGLEIPGWGGALVLPAQNLS-SSPPSAHGPHAPT------------CFLTEATYHHILSFLQPILRTT---PSVLSPS 395          
The following BLAST results are available for this feature:
BLAST of NO07G03750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26978.12.500e-7243.83Phosphatidylinositol-glycan biosynthesis class S p... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03750NO07G03750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03750.1NO07G03750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03750.1.cds1NO07G03750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03750.1 ID=NO07G03750.1|Name=NO07G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp
ATGGCCGGCACTCGGCTTTTGACGCAGCTCTGGTTCACTGCAGGGATCGG
TCTGCTGGCACCTTTTGCGTTTTGGTCAGCTTGGTGGCCCGTGGGGTTTA
AGAGCGTGACTTTGCCTCCCTTGCCGCTGTCACTGCAGAAACCGCATACA
CCGTTTCCCCTAACTCTGCATGTTTTACTTCCCTACGATCACCACCTCCA
TGAAGGGACGGAAGTGGAGATAGAAAGCATCCGAGTCGTCTGGACTACAA
TCAGCATTCCTATGGAAGGGAAGGACGAATCACTCTTGGTACAAGCGCGG
CGCCTGCTCCAGGAGCACGCCCCCGGAGATGACGACGAGAGGCTCTTGCA
GTATTGGCTCGTCCTACTCCCTACCCCACAGCCCGCCTCCTCTTTAGCAT
CATCATCGTCGTCCTCAAACATCACCTGGCGCCTTCAAGAACGCTTCGGG
TACACCAGCAATTCCATCAATATAGCCAGTCGAGCTTGTCACGACCTCGC
CCAGGCCCTCAGCCACGTCATTTTCAACCCACCTCCCTCCCACCTCATCT
CCCTCCAACGTAACGTGCAATTGGCCCTTCTCAGTCAAGATGCCAGCCAT
CGCTTCTGCAAATGGAACGTTTCCCGCCTATTGGACCACTATCTCAACCC
TCTTTTCCACCAGCTAGCGCCCTTGACCACCCTCCTTCCCTCCCTCCAAC
TCCTCCCCTTCGGGACGCTCCTCCCACCCAGCACCACGCAACGTCACGGG
CATCGTATTCCTACCTCTGCGCTCATTGGCATGGAAGGATACTGGAATGA
GAATCTTCTCCCTCCCTCACTCCCTTTCGTGGGGGAAGGAATGGGAGAGC
CCGTGCCTCCCCTCCGCGTCATTTTCTACTGCCCAGCCACGGAGGAGGAG
CAAAGGATGGTGTTTGTTGCGGATGAGCACAAGGGTGGAGAGGATGCTCC
GTCGTCCTCGTCCTCTATTGGGGTGGAGCTGGAAGACTGGGGCGGGATGA
TGGTCCTCCAAACAAACAACCATTCCACTTCCTCCCCTCCGTCCTCTTCC
TCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCTCCGCCCTT
CTACTCTTTCCTCTCTGATGCCAACTACAGATCCATTACCACCTTCCTCA
AAATCCTCCTCCGCCACTCGCTGGGCTTCCCCTCCTCCCTCCCTCCCTCC
CTCCCTCCCTGCCGCACCTCTCAAGCCCTGCATCCTCTCGAATTGGACAC
GATGGCAATTCACACGGCGGAGGAACGACGACGCGACACCCTCCACCGCC
TCTCCCTCCTTCGTGACCTCCTTTCTACTCACCCAGGCATGTCCTGTCCT
GCCCGTGTTGCAAGCCGCGTGGAAGCAGCTATGGCCAGCTTACAGACTCG
GGAAGACGACAGAGAAGGCAGCATTAGTGGTAACAAGAACAGCAGCAGGA
GCAGAAGCAGAAGCGGAGCCACGTCTATCTCTTTCTCCCCCTCCCCCTCT
TCTTTTTGGCATACATTAATGAATTTAAACAACGCGTGGGCTGCTGCCCA
AGAAGCACAACAAGACGAGGCCCTCCTTCCTCCCCCCCACCACCCTTTCG
AGCACTACGCAGCCATCTTCCTCCCCCTTCTCCTCCCTGTTCTCCTCCCT
CTACTCCTGGGACTACAAAATGAGTGGATGCGATACGAGAAGAAAGTGAA
TTTGAAGAAGCAGAAGAAGCAGAAGAAGAAACAGAAGCAGAAGACGGGTT
GA
back to top

protein sequence of NO07G03750.1

>NO07G03750.1-protein ID=NO07G03750.1-protein|Name=NO07G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=584bp
MAGTRLLTQLWFTAGIGLLAPFAFWSAWWPVGFKSVTLPPLPLSLQKPHT
PFPLTLHVLLPYDHHLHEGTEVEIESIRVVWTTISIPMEGKDESLLVQAR
RLLQEHAPGDDDERLLQYWLVLLPTPQPASSLASSSSSSNITWRLQERFG
YTSNSINIASRACHDLAQALSHVIFNPPPSHLISLQRNVQLALLSQDASH
RFCKWNVSRLLDHYLNPLFHQLAPLTTLLPSLQLLPFGTLLPPSTTQRHG
HRIPTSALIGMEGYWNENLLPPSLPFVGEGMGEPVPPLRVIFYCPATEEE
QRMVFVADEHKGGEDAPSSSSSIGVELEDWGGMMVLQTNNHSTSSPPSSS
SSSSSSSSSSSSSSPPFYSFLSDANYRSITTFLKILLRHSLGFPSSLPPS
LPPCRTSQALHPLELDTMAIHTAEERRRDTLHRLSLLRDLLSTHPGMSCP
ARVASRVEAAMASLQTREDDREGSISGNKNSSRSRSRSGATSISFSPSPS
SFWHTLMNLNNAWAAAQEAQQDEALLPPPHHPFEHYAAIFLPLLLPVLLP
LLLGLQNEWMRYEKKVNLKKQKKQKKKQKQKTG*
back to top

mRNA from alignment at chr7:1052833..1054584-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03750.1 ID=NO07G03750.1|Name=NO07G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp|location=Sequence derived from alignment at chr7:1052833..1054584- (Nannochloropsis oceanica)
ATGGCCGGCACTCGGCTTTTGACGCAGCTCTGGTTCACTGCAGGGATCGG TCTGCTGGCACCTTTTGCGTTTTGGTCAGCTTGGTGGCCCGTGGGGTTTA AGAGCGTGACTTTGCCTCCCTTGCCGCTGTCACTGCAGAAACCGCATACA CCGTTTCCCCTAACTCTGCATGTTTTACTTCCCTACGATCACCACCTCCA TGAAGGGACGGAAGTGGAGATAGAAAGCATCCGAGTCGTCTGGACTACAA TCAGCATTCCTATGGAAGGGAAGGACGAATCACTCTTGGTACAAGCGCGG CGCCTGCTCCAGGAGCACGCCCCCGGAGATGACGACGAGAGGCTCTTGCA GTATTGGCTCGTCCTACTCCCTACCCCACAGCCCGCCTCCTCTTTAGCAT CATCATCGTCGTCCTCAAACATCACCTGGCGCCTTCAAGAACGCTTCGGG TACACCAGCAATTCCATCAATATAGCCAGTCGAGCTTGTCACGACCTCGC CCAGGCCCTCAGCCACGTCATTTTCAACCCACCTCCCTCCCACCTCATCT CCCTCCAACGTAACGTGCAATTGGCCCTTCTCAGTCAAGATGCCAGCCAT CGCTTCTGCAAATGGAACGTTTCCCGCCTATTGGACCACTATCTCAACCC TCTTTTCCACCAGCTAGCGCCCTTGACCACCCTCCTTCCCTCCCTCCAAC TCCTCCCCTTCGGGACGCTCCTCCCACCCAGCACCACGCAACGTCACGGG CATCGTATTCCTACCTCTGCGCTCATTGGCATGGAAGGATACTGGAATGA GAATCTTCTCCCTCCCTCACTCCCTTTCGTGGGGGAAGGAATGGGAGAGC CCGTGCCTCCCCTCCGCGTCATTTTCTACTGCCCAGCCACGGAGGAGGAG CAAAGGATGGTGTTTGTTGCGGATGAGCACAAGGGTGGAGAGGATGCTCC GTCGTCCTCGTCCTCTATTGGGGTGGAGCTGGAAGACTGGGGCGGGATGA TGGTCCTCCAAACAAACAACCATTCCACTTCCTCCCCTCCGTCCTCTTCC TCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCTCCGCCCTT CTACTCTTTCCTCTCTGATGCCAACTACAGATCCATTACCACCTTCCTCA AAATCCTCCTCCGCCACTCGCTGGGCTTCCCCTCCTCCCTCCCTCCCTCC CTCCCTCCCTGCCGCACCTCTCAAGCCCTGCATCCTCTCGAATTGGACAC GATGGCAATTCACACGGCGGAGGAACGACGACGCGACACCCTCCACCGCC TCTCCCTCCTTCGTGACCTCCTTTCTACTCACCCAGGCATGTCCTGTCCT GCCCGTGTTGCAAGCCGCGTGGAAGCAGCTATGGCCAGCTTACAGACTCG GGAAGACGACAGAGAAGGCAGCATTAGTGGTAACAAGAACAGCAGCAGGA GCAGAAGCAGAAGCGGAGCCACGTCTATCTCTTTCTCCCCCTCCCCCTCT TCTTTTTGGCATACATTAATGAATTTAAACAACGCGTGGGCTGCTGCCCA AGAAGCACAACAAGACGAGGCCCTCCTTCCTCCCCCCCACCACCCTTTCG AGCACTACGCAGCCATCTTCCTCCCCCTTCTCCTCCCTGTTCTCCTCCCT CTACTCCTGGGACTACAAAATGAGTGGATGCGATACGAGAAGAAAGTGAA TTTGAAGAAGCAGAAGAAGCAGAAGAAGAAACAGAAGCAGAAGACGGGTT GA
back to top

Coding sequence (CDS) from alignment at chr7:1052833..1054584-

>NO07G03750.1 ID=NO07G03750.1|Name=NO07G03750.1|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at chr7:1052833..1054584- (Nannochloropsis oceanica)
ATGGCCGGCACTCGGCTTTTGACGCAGCTCTGGTTCACTGCAGGGATCGG
TCTGCTGGCACCTTTTGCGTTTTGGTCAGCTTGGTGGCCCGTGGGGTTTA
AGAGCGTGACTTTGCCTCCCTTGCCGCTGTCACTGCAGAAACCGCATACA
CCGTTTCCCCTAACTCTGCATGTTTTACTTCCCTACGATCACCACCTCCA
TGAAGGGACGGAAGTGGAGATAGAAAGCATCCGAGTCGTCTGGACTACAA
TCAGCATTCCTATGGAAGGGAAGGACGAATCACTCTTGGTACAAGCGCGG
CGCCTGCTCCAGGAGCACGCCCCCGGAGATGACGACGAGAGGCTCTTGCA
GTATTGGCTCGTCCTACTCCCTACCCCACAGCCCGCCTCCTCTTTAGCAT
CATCATCGTCGTCCTCAAACATCACCTGGCGCCTTCAAGAACGCTTCGGG
TACACCAGCAATTCCATCAATATAGCCAGTCGAGCTTGTCACGACCTCGC
CCAGGCCCTCAGCCACGTCATTTTCAACCCACCTCCCTCCCACCTCATCT
CCCTCCAACGTAACGTGCAATTGGCCCTTCTCAGTCAAGATGCCAGCCAT
CGCTTCTGCAAATGGAACGTTTCCCGCCTATTGGACCACTATCTCAACCC
TCTTTTCCACCAGCTAGCGCCCTTGACCACCCTCCTTCCCTCCCTCCAAC
TCCTCCCCTTCGGGACGCTCCTCCCACCCAGCACCACGCAACGTCACGGG
CATCGTATTCCTACCTCTGCGCTCATTGGCATGGAAGGATACTGGAATGA
GAATCTTCTCCCTCCCTCACTCCCTTTCGTGGGGGAAGGAATGGGAGAGC
CCGTGCCTCCCCTCCGCGTCATTTTCTACTGCCCAGCCACGGAGGAGGAG
CAAAGGATGGTGTTTGTTGCGGATGAGCACAAGGGTGGAGAGGATGCTCC
GTCGTCCTCGTCCTCTATTGGGGTGGAGCTGGAAGACTGGGGCGGGATGA
TGGTCCTCCAAACAAACAACCATTCCACTTCCTCCCCTCCGTCCTCTTCC
TCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCTCCGCCCTT
CTACTCTTTCCTCTCTGATGCCAACTACAGATCCATTACCACCTTCCTCA
AAATCCTCCTCCGCCACTCGCTGGGCTTCCCCTCCTCCCTCCCTCCCTCC
CTCCCTCCCTGCCGCACCTCTCAAGCCCTGCATCCTCTCGAATTGGACAC
GATGGCAATTCACACGGCGGAGGAACGACGACGCGACACCCTCCACCGCC
TCTCCCTCCTTCGTGACCTCCTTTCTACTCACCCAGGCATGTCCTGTCCT
GCCCGTGTTGCAAGCCGCGTGGAAGCAGCTATGGCCAGCTTACAGACTCG
GGAAGACGACAGAGAAGGCAGCATTAGTGGTAACAAGAACAGCAGCAGGA
GCAGAAGCAGAAGCGGAGCCACGTCTATCTCTTTCTCCCCCTCCCCCTCT
TCTTTTTGGCATACATTAATGAATTTAAACAACGCGTGGGCTGCTGCCCA
AGAAGCACAACAAGACGAGGCCCTCCTTCCTCCCCCCCACCACCCTTTCG
AGCACTACGCAGCCATCTTCCTCCCCCTTCTCCTCCCTGTTCTCCTCCCT
CTACTCCTGGGACTACAAAATGAGTGGATGCGATACGAGAAGAAAGTGAA
TTTGAAGAAGCAGAAGAAGCAGAAGAAGAAACAGAAGCAGAAGACGGGTT
GA
back to top
Synonyms
Publications