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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:1052833..1054584 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03750.1 vs.
Match: EWM26978.1 (Phosphatidylinositol-glycan biosynthesis class S protein [Nannochloropsis gaditana]) HSP 1 Score: 282.7 bits (722), Expect = 2.500e-72 Identity = 181/413 (43.83%), Postives = 242/413 (58.60%), Query Frame = 0
Query: 1 MAGTRLLTQLWFTAGIGLLAPFAFWSAWWPVGFKSVTLPPLPLSLQKPHTPFPLTLHVLLPYDHHLHEGTEVEIESIRVVWTTISIPMEG---KDESLLVQARRLLQEHAPGDDDERLLQYWLVLLPTPQPASSLASSSSS---SNITWRLQERFGYT---SNSINIASRACHDLAQALSHVIFNPPPSHLISLQRNVQLALLSQDASHRFCKWNVSRLLDHYLNPLFHQLAPLTTLLPSLQLLPFGTLLPPSTTQRHGHRIPTSALIGMEGYWNENLLPPSLPFVGEGMGEPVPPLRVIFYCPATEEEQRMVFVADEHKGGEDAPSSSS----SIGVELEDWGGMMVLQTNNHSTSSPPSSSSSSSSSSSSSSSSSPPFYSFLSDANYRSITTFLKILLRHSLGFPSSLPPS 401
MAGTRL TQLWF AG+ +LAPFAF AWW GF+ V+ P +P SL+ P PF L VL+ +D E+E++ RV +S ++E+L ARR + E+A + D +LQYWLVLLP+ P SS + SS+ S ITWRL+ERFGY ++ +I +A +L+ A + + F P S + L R +QL L+SQDAS RFC+WN + LL+ +LNPL L PLTT LPSLQLLP+GTLLP T HG+ +P S L G+ YW LLPPSL V G PLR +FYCPA+ EQ + F+ D +G ++SS S G+E+ WGG +VL N S SSPPS+ + + FL++A Y I +FL+ +LR + PS L PS
Sbjct: 1 MAGTRLWTQLWFLAGVVVLAPFAFRLAWWQEGFERVSFPDIPSSLRPPGAPFLPFLVVLVGHDFS-SSLMEMEVDDFRVALKRVSFIAASSGQENETLESFARRAVAENAAPEMDANMLQYWLVLLPSSLPMSSTEADSSTPSISGITWRLEERFGYARRGNDDHSIIQQAGRELSHARAQISFRPATSTPLPLAREIQLTLVSQDASVRFCRWNRAHLLNRHLNPLVRALIPLTTFLPSLQLLPYGTLLPVQTKHAHGYPLPLSTLTGIRQYWETTLLPPSLSLVAT-PGPMASPLRFLFYCPASSSEQSLAFMDDVEEGLRGTSNASSHHAVSTGLEIPGWGGALVLPAQNLS-SSPPSAHGPHAPT------------CFLTEATYHHILSFLQPILRTT---PSVLSPS 395
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03750.1 ID=NO07G03750.1|Name=NO07G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp ATGGCCGGCACTCGGCTTTTGACGCAGCTCTGGTTCACTGCAGGGATCGG TCTGCTGGCACCTTTTGCGTTTTGGTCAGCTTGGTGGCCCGTGGGGTTTA AGAGCGTGACTTTGCCTCCCTTGCCGCTGTCACTGCAGAAACCGCATACA CCGTTTCCCCTAACTCTGCATGTTTTACTTCCCTACGATCACCACCTCCA TGAAGGGACGGAAGTGGAGATAGAAAGCATCCGAGTCGTCTGGACTACAA TCAGCATTCCTATGGAAGGGAAGGACGAATCACTCTTGGTACAAGCGCGG CGCCTGCTCCAGGAGCACGCCCCCGGAGATGACGACGAGAGGCTCTTGCA GTATTGGCTCGTCCTACTCCCTACCCCACAGCCCGCCTCCTCTTTAGCAT CATCATCGTCGTCCTCAAACATCACCTGGCGCCTTCAAGAACGCTTCGGG TACACCAGCAATTCCATCAATATAGCCAGTCGAGCTTGTCACGACCTCGC CCAGGCCCTCAGCCACGTCATTTTCAACCCACCTCCCTCCCACCTCATCT CCCTCCAACGTAACGTGCAATTGGCCCTTCTCAGTCAAGATGCCAGCCAT CGCTTCTGCAAATGGAACGTTTCCCGCCTATTGGACCACTATCTCAACCC TCTTTTCCACCAGCTAGCGCCCTTGACCACCCTCCTTCCCTCCCTCCAAC TCCTCCCCTTCGGGACGCTCCTCCCACCCAGCACCACGCAACGTCACGGG CATCGTATTCCTACCTCTGCGCTCATTGGCATGGAAGGATACTGGAATGA GAATCTTCTCCCTCCCTCACTCCCTTTCGTGGGGGAAGGAATGGGAGAGC CCGTGCCTCCCCTCCGCGTCATTTTCTACTGCCCAGCCACGGAGGAGGAG CAAAGGATGGTGTTTGTTGCGGATGAGCACAAGGGTGGAGAGGATGCTCC GTCGTCCTCGTCCTCTATTGGGGTGGAGCTGGAAGACTGGGGCGGGATGA TGGTCCTCCAAACAAACAACCATTCCACTTCCTCCCCTCCGTCCTCTTCC TCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCTCCGCCCTT CTACTCTTTCCTCTCTGATGCCAACTACAGATCCATTACCACCTTCCTCA AAATCCTCCTCCGCCACTCGCTGGGCTTCCCCTCCTCCCTCCCTCCCTCC CTCCCTCCCTGCCGCACCTCTCAAGCCCTGCATCCTCTCGAATTGGACAC GATGGCAATTCACACGGCGGAGGAACGACGACGCGACACCCTCCACCGCC TCTCCCTCCTTCGTGACCTCCTTTCTACTCACCCAGGCATGTCCTGTCCT GCCCGTGTTGCAAGCCGCGTGGAAGCAGCTATGGCCAGCTTACAGACTCG GGAAGACGACAGAGAAGGCAGCATTAGTGGTAACAAGAACAGCAGCAGGA GCAGAAGCAGAAGCGGAGCCACGTCTATCTCTTTCTCCCCCTCCCCCTCT TCTTTTTGGCATACATTAATGAATTTAAACAACGCGTGGGCTGCTGCCCA AGAAGCACAACAAGACGAGGCCCTCCTTCCTCCCCCCCACCACCCTTTCG AGCACTACGCAGCCATCTTCCTCCCCCTTCTCCTCCCTGTTCTCCTCCCT CTACTCCTGGGACTACAAAATGAGTGGATGCGATACGAGAAGAAAGTGAA TTTGAAGAAGCAGAAGAAGCAGAAGAAGAAACAGAAGCAGAAGACGGGTT GA back to topprotein sequence of NO07G03750.1 >NO07G03750.1-protein ID=NO07G03750.1-protein|Name=NO07G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=584bp MAGTRLLTQLWFTAGIGLLAPFAFWSAWWPVGFKSVTLPPLPLSLQKPHT PFPLTLHVLLPYDHHLHEGTEVEIESIRVVWTTISIPMEGKDESLLVQAR RLLQEHAPGDDDERLLQYWLVLLPTPQPASSLASSSSSSNITWRLQERFG YTSNSINIASRACHDLAQALSHVIFNPPPSHLISLQRNVQLALLSQDASH RFCKWNVSRLLDHYLNPLFHQLAPLTTLLPSLQLLPFGTLLPPSTTQRHG HRIPTSALIGMEGYWNENLLPPSLPFVGEGMGEPVPPLRVIFYCPATEEE QRMVFVADEHKGGEDAPSSSSSIGVELEDWGGMMVLQTNNHSTSSPPSSS SSSSSSSSSSSSSSPPFYSFLSDANYRSITTFLKILLRHSLGFPSSLPPS LPPCRTSQALHPLELDTMAIHTAEERRRDTLHRLSLLRDLLSTHPGMSCP ARVASRVEAAMASLQTREDDREGSISGNKNSSRSRSRSGATSISFSPSPS SFWHTLMNLNNAWAAAQEAQQDEALLPPPHHPFEHYAAIFLPLLLPVLLP LLLGLQNEWMRYEKKVNLKKQKKQKKKQKQKTG* back to topmRNA from alignment at chr7:1052833..1054584- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03750.1 ID=NO07G03750.1|Name=NO07G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp|location=Sequence derived from alignment at chr7:1052833..1054584- (Nannochloropsis oceanica) ATGGCCGGCACTCGGCTTTTGACGCAGCTCTGGTTCACTGCAGGGATCGG
TCTGCTGGCACCTTTTGCGTTTTGGTCAGCTTGGTGGCCCGTGGGGTTTA
AGAGCGTGACTTTGCCTCCCTTGCCGCTGTCACTGCAGAAACCGCATACA
CCGTTTCCCCTAACTCTGCATGTTTTACTTCCCTACGATCACCACCTCCA
TGAAGGGACGGAAGTGGAGATAGAAAGCATCCGAGTCGTCTGGACTACAA
TCAGCATTCCTATGGAAGGGAAGGACGAATCACTCTTGGTACAAGCGCGG
CGCCTGCTCCAGGAGCACGCCCCCGGAGATGACGACGAGAGGCTCTTGCA
GTATTGGCTCGTCCTACTCCCTACCCCACAGCCCGCCTCCTCTTTAGCAT
CATCATCGTCGTCCTCAAACATCACCTGGCGCCTTCAAGAACGCTTCGGG
TACACCAGCAATTCCATCAATATAGCCAGTCGAGCTTGTCACGACCTCGC
CCAGGCCCTCAGCCACGTCATTTTCAACCCACCTCCCTCCCACCTCATCT
CCCTCCAACGTAACGTGCAATTGGCCCTTCTCAGTCAAGATGCCAGCCAT
CGCTTCTGCAAATGGAACGTTTCCCGCCTATTGGACCACTATCTCAACCC
TCTTTTCCACCAGCTAGCGCCCTTGACCACCCTCCTTCCCTCCCTCCAAC
TCCTCCCCTTCGGGACGCTCCTCCCACCCAGCACCACGCAACGTCACGGG
CATCGTATTCCTACCTCTGCGCTCATTGGCATGGAAGGATACTGGAATGA
GAATCTTCTCCCTCCCTCACTCCCTTTCGTGGGGGAAGGAATGGGAGAGC
CCGTGCCTCCCCTCCGCGTCATTTTCTACTGCCCAGCCACGGAGGAGGAG
CAAAGGATGGTGTTTGTTGCGGATGAGCACAAGGGTGGAGAGGATGCTCC
GTCGTCCTCGTCCTCTATTGGGGTGGAGCTGGAAGACTGGGGCGGGATGA
TGGTCCTCCAAACAAACAACCATTCCACTTCCTCCCCTCCGTCCTCTTCC
TCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCTCCGCCCTT
CTACTCTTTCCTCTCTGATGCCAACTACAGATCCATTACCACCTTCCTCA
AAATCCTCCTCCGCCACTCGCTGGGCTTCCCCTCCTCCCTCCCTCCCTCC
CTCCCTCCCTGCCGCACCTCTCAAGCCCTGCATCCTCTCGAATTGGACAC
GATGGCAATTCACACGGCGGAGGAACGACGACGCGACACCCTCCACCGCC
TCTCCCTCCTTCGTGACCTCCTTTCTACTCACCCAGGCATGTCCTGTCCT
GCCCGTGTTGCAAGCCGCGTGGAAGCAGCTATGGCCAGCTTACAGACTCG
GGAAGACGACAGAGAAGGCAGCATTAGTGGTAACAAGAACAGCAGCAGGA
GCAGAAGCAGAAGCGGAGCCACGTCTATCTCTTTCTCCCCCTCCCCCTCT
TCTTTTTGGCATACATTAATGAATTTAAACAACGCGTGGGCTGCTGCCCA
AGAAGCACAACAAGACGAGGCCCTCCTTCCTCCCCCCCACCACCCTTTCG
AGCACTACGCAGCCATCTTCCTCCCCCTTCTCCTCCCTGTTCTCCTCCCT
CTACTCCTGGGACTACAAAATGAGTGGATGCGATACGAGAAGAAAGTGAA
TTTGAAGAAGCAGAAGAAGCAGAAGAAGAAACAGAAGCAGAAGACGGGTT
GA back to topCoding sequence (CDS) from alignment at chr7:1052833..1054584- >NO07G03750.1 ID=NO07G03750.1|Name=NO07G03750.1|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at chr7:1052833..1054584- (Nannochloropsis oceanica) ATGGCCGGCACTCGGCTTTTGACGCAGCTCTGGTTCACTGCAGGGATCGG TCTGCTGGCACCTTTTGCGTTTTGGTCAGCTTGGTGGCCCGTGGGGTTTA AGAGCGTGACTTTGCCTCCCTTGCCGCTGTCACTGCAGAAACCGCATACA CCGTTTCCCCTAACTCTGCATGTTTTACTTCCCTACGATCACCACCTCCA TGAAGGGACGGAAGTGGAGATAGAAAGCATCCGAGTCGTCTGGACTACAA TCAGCATTCCTATGGAAGGGAAGGACGAATCACTCTTGGTACAAGCGCGG CGCCTGCTCCAGGAGCACGCCCCCGGAGATGACGACGAGAGGCTCTTGCA GTATTGGCTCGTCCTACTCCCTACCCCACAGCCCGCCTCCTCTTTAGCAT CATCATCGTCGTCCTCAAACATCACCTGGCGCCTTCAAGAACGCTTCGGG TACACCAGCAATTCCATCAATATAGCCAGTCGAGCTTGTCACGACCTCGC CCAGGCCCTCAGCCACGTCATTTTCAACCCACCTCCCTCCCACCTCATCT CCCTCCAACGTAACGTGCAATTGGCCCTTCTCAGTCAAGATGCCAGCCAT CGCTTCTGCAAATGGAACGTTTCCCGCCTATTGGACCACTATCTCAACCC TCTTTTCCACCAGCTAGCGCCCTTGACCACCCTCCTTCCCTCCCTCCAAC TCCTCCCCTTCGGGACGCTCCTCCCACCCAGCACCACGCAACGTCACGGG CATCGTATTCCTACCTCTGCGCTCATTGGCATGGAAGGATACTGGAATGA GAATCTTCTCCCTCCCTCACTCCCTTTCGTGGGGGAAGGAATGGGAGAGC CCGTGCCTCCCCTCCGCGTCATTTTCTACTGCCCAGCCACGGAGGAGGAG CAAAGGATGGTGTTTGTTGCGGATGAGCACAAGGGTGGAGAGGATGCTCC GTCGTCCTCGTCCTCTATTGGGGTGGAGCTGGAAGACTGGGGCGGGATGA TGGTCCTCCAAACAAACAACCATTCCACTTCCTCCCCTCCGTCCTCTTCC TCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCTCCGCCCTT CTACTCTTTCCTCTCTGATGCCAACTACAGATCCATTACCACCTTCCTCA AAATCCTCCTCCGCCACTCGCTGGGCTTCCCCTCCTCCCTCCCTCCCTCC CTCCCTCCCTGCCGCACCTCTCAAGCCCTGCATCCTCTCGAATTGGACAC GATGGCAATTCACACGGCGGAGGAACGACGACGCGACACCCTCCACCGCC TCTCCCTCCTTCGTGACCTCCTTTCTACTCACCCAGGCATGTCCTGTCCT GCCCGTGTTGCAAGCCGCGTGGAAGCAGCTATGGCCAGCTTACAGACTCG GGAAGACGACAGAGAAGGCAGCATTAGTGGTAACAAGAACAGCAGCAGGA GCAGAAGCAGAAGCGGAGCCACGTCTATCTCTTTCTCCCCCTCCCCCTCT TCTTTTTGGCATACATTAATGAATTTAAACAACGCGTGGGCTGCTGCCCA AGAAGCACAACAAGACGAGGCCCTCCTTCCTCCCCCCCACCACCCTTTCG AGCACTACGCAGCCATCTTCCTCCCCCTTCTCCTCCCTGTTCTCCTCCCT CTACTCCTGGGACTACAAAATGAGTGGATGCGATACGAGAAGAAAGTGAA TTTGAAGAAGCAGAAGAAGCAGAAGAAGAAACAGAAGCAGAAGACGGGTT GA back to top
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