NO07G03670.1, NO07G03670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03670.1
Unique NameNO07G03670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1197
Alignment locationchr7:1019936..1021337 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1019936..1021337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03670.1 vs.
Match: EWM27010.1 (iron-containing alcohol dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 658.3 bits (1697), Expect = 1.500e-185
Identity = 315/387 (81.40%), Postives = 350/387 (90.44%), Query Frame = 0 
Query:    1 MRLSGAGVKRFCNPVKLTFTEWGNWEPVILEAVGKRKALLMTYPQAEASDGLFSNLRAVLGEDKMLWVACPELPDMNEHRGLHRRIRNFVRDRDDFVIVAVGGGSVLDLAKVMSLARSQMDFEDVFTERIARGKRIDKLRHVPVIAVPTTAGTGSEVTPWAAVWDTKKKKKWSVQGHSLWPEAAILDPSLSASCPREVTRNSALDALSHSLEALWNVNHNPISDVLAVAAAKGIMAHLPTILSQDERDGSDCDREIVQARIGLSTASLRAGLAFSNTETALAHAISYQITIEQGVKHGAACSFSLPRVMQMALGQQDPSRDALLHDIFSDMKVADALAGRSVRQPYEYLERFLNEEAGVSTALEDYGIAGEKDFSERVREALWHRRG 388
            MRLS AGVKRF NPV+L FTEWGNWE  ILEAVG RKALLMTYPQAEAS GLFSNLRAVLG+DKMLWVACPELPD+NEHRG+HRR+RNFVRDRD+ VIVAVGGGSV+DLAKVMSLARSQ+DFED+FTERIA GK ID+L HVPV+AVPTTAGTGSEVTPWAAVWDT+ KKKWSVQG SLWPE AILDPSLSASCPREVTRNSALDALSHS EA+WNVNHNP+SDVLAVAAAKG++ HLPT+++QD RDG D ++ ++ AR GLS ASLRAGLAFSNTETALAHAISY+ITIEQGVKHGAACSFSLPRV+++AL Q DP+RDAL  +IFSD   AD LAGR  R+PYEYLE FLNE+AGVSTALEDYGI+GE +F ER+R+ALWHR G
Sbjct:   52 MRLSSAGVKRFYNPVRLNFTEWGNWETSILEAVGNRKALLMTYPQAEASGGLFSNLRAVLGDDKMLWVACPELPDVNEHRGMHRRVRNFVRDRDNIVIVAVGGGSVIDLAKVMSLARSQVDFEDIFTERIAAGKHIDRLSHVPVVAVPTTAGTGSEVTPWAAVWDTQSKKKWSVQGRSLWPERAILDPSLSASCPREVTRNSALDALSHSFEAIWNVNHNPVSDVLAVAAAKGVLRHLPTVIAQDPRDGGDDEKALLLARTGLSVASLRAGLAFSNTETALAHAISYRITIEQGVKHGAACSFSLPRVLRLALEQADPTRDALFQEIFSDFMTADKLAGRRPREPYEYLEHFLNEDAGVSTALEDYGISGEVEFQERIRQALWHRPG 438
The following BLAST results are available for this feature:
BLAST of NO07G03670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27010.11.500e-18581.40iron-containing alcohol dehydrogenase [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03670NO07G03670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03670.1NO07G03670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03670.1.cds1NO07G03670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03670.1.cds2NO07G03670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03670.1.cds3NO07G03670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03670.1 ID=NO07G03670.1|Name=NO07G03670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1197bp
ATGAGGCTGAGCGGCGCAGGCGTGAAGCGCTTCTGCAATCCTGTCAAGTT
AACTTTTACTGAATGGGGGAACTGGGAGCCTGTTATTCTGGAGGCGGTGG
GGAAAAGGAAGGCATTGCTAATGACGTATCCGCAAGCTGAGGCCTCAGAT
GGTCTCTTTTCCAACCTTCGCGCCGTCCTCGGCGAGGACAAGATGCTGTG
GGTCGCATGCCCGGAGCTTCCTGACATGAATGAACACAGAGGGCTGCACC
GTCGGATACGGAATTTTGTGCGGGATAGGGATGATTTCGTGATTGTAGCT
GTAGGAGGGGGCAGTGTGTTGGACTTGGCGAAGGTCATGAGTCTTGCACG
GAGCCAGATGGATTTTGAGGATGTCTTCACGGAGCGCATCGCAAGGGGGA
AGAGGATTGATAAATTGCGGCACGTGCCTGTGATTGCCGTACCCACGACA
GCGGGGACAGGATCGGAAGTCACTCCCTGGGCGGCCGTGTGGGACACCAA
GAAGAAGAAGAAGTGGTCGGTGCAAGGGCATAGCCTGTGGCCGGAGGCTG
CCATATTAGATCCCTCTCTCTCTGCGTCCTGCCCGAGGGAGGTCACGAGA
AACAGCGCGCTGGACGCCCTGAGCCATTCCCTTGAAGCCCTGTGGAACGT
GAATCACAACCCAATCTCCGATGTTTTGGCCGTGGCTGCCGCGAAGGGAA
TCATGGCCCACTTGCCCACCATCCTCTCGCAAGACGAGCGTGATGGCAGC
GATTGCGACCGGGAAATCGTCCAAGCACGCATCGGCCTCTCCACAGCCTC
CCTCCGCGCAGGTCTCGCTTTCAGTAACACCGAAACTGCGCTTGCGCACG
CCATCTCCTACCAAATTACGATCGAACAAGGCGTGAAGCACGGAGCAGCT
TGCTCTTTCTCCCTTCCCAGAGTGATGCAAATGGCACTGGGGCAGCAAGA
CCCGAGTCGGGACGCATTACTTCACGATATTTTTTCGGACATGAAAGTGG
CCGATGCGCTGGCTGGAAGAAGTGTCAGGCAGCCGTATGAGTATCTAGAG
AGATTTTTGAATGAAGAAGCAGGGGTATCCACAGCGCTAGAGGACTATGG
TATTGCGGGCGAGAAGGACTTTTCGGAGCGAGTGAGGGAGGCTTTATGGC
ATCGGAGGGGGAGGAACTTCTTGTTGGCGGCTCATTTGAAGCGGTAG
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protein sequence of NO07G03670.1

>NO07G03670.1-protein ID=NO07G03670.1-protein|Name=NO07G03670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MRLSGAGVKRFCNPVKLTFTEWGNWEPVILEAVGKRKALLMTYPQAEASD
GLFSNLRAVLGEDKMLWVACPELPDMNEHRGLHRRIRNFVRDRDDFVIVA
VGGGSVLDLAKVMSLARSQMDFEDVFTERIARGKRIDKLRHVPVIAVPTT
AGTGSEVTPWAAVWDTKKKKKWSVQGHSLWPEAAILDPSLSASCPREVTR
NSALDALSHSLEALWNVNHNPISDVLAVAAAKGIMAHLPTILSQDERDGS
DCDREIVQARIGLSTASLRAGLAFSNTETALAHAISYQITIEQGVKHGAA
CSFSLPRVMQMALGQQDPSRDALLHDIFSDMKVADALAGRSVRQPYEYLE
RFLNEEAGVSTALEDYGIAGEKDFSERVREALWHRRGRNFLLAAHLKR*
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mRNA from alignment at chr7:1019936..1021337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03670.1 ID=NO07G03670.1|Name=NO07G03670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp|location=Sequence derived from alignment at chr7:1019936..1021337- (Nannochloropsis oceanica)
ATGAGGCTGAGCGGCGCAGGCGTGAAGCGCTTCTGCAATCCTGTCAAGTT
AACTTTTACTGAATGGGGGAACTGGGAGCCTGTTATTCTGGAGGCGGTGG
GGAAAAGGAAGGCATTGCTAATGACGGTGAGGGGAGCGAGGGAGTTTACC
CGACATTTAGGTATGTGTAGCACTCCACTCACAAATTTATTCACACGTAT
GTCTAACACATAATAGTATCCGCAAGCTGAGGCCTCAGATGGTCTCTTTT
CCAACCTTCGCGCCGTCCTCGGCGAGGACAAGATGCTGTGGGTCGCATGC
CCGGAGCTTCCTGACATGAATGAACACAGAGGGCTGCACCGTCGGATACG
GAATTTTGTGCGGGATAGGGATGATTTCGTGATTGTAGCTGTAGGAGGGG
GCAGTGTGTTGGACTTGGCGAAGGTCATGAGTCTTGCACGGAGCCAGATG
GATTTTGAGGATGTCTTCACGGAGCGCATCGCAAGGGGGAAGAGGATTGA
TAAATTGCGGCACGTGCCTGTGATTGCCGTACCCACGACAGGTCCGTTTA
TGCTTGTGACATCATCCAAGAGCAACATAGATGGCTCCCTCCTCGTTTCC
ATTTAAAAACATCTTCCTCGCATTCCTTATTTCTTTCAACCTTCACCTTG
CCACAGCGGGGACAGGATCGGAAGTCACTCCCTGGGCGGCCGTGTGGGAC
ACCAAGAAGAAGAAGAAGTGGTCGGTGCAAGGGCATAGCCTGTGGCCGGA
GGCTGCCATATTAGATCCCTCTCTCTCTGCGTCCTGCCCGAGGGAGGTCA
CGAGAAACAGCGCGCTGGACGCCCTGAGCCATTCCCTTGAAGCCCTGTGG
AACGTGAATCACAACCCAATCTCCGATGTTTTGGCCGTGGCTGCCGCGAA
GGGAATCATGGCCCACTTGCCCACCATCCTCTCGCAAGACGAGCGTGATG
GCAGCGATTGCGACCGGGAAATCGTCCAAGCACGCATCGGCCTCTCCACA
GCCTCCCTCCGCGCAGGTCTCGCTTTCAGTAACACCGAAACTGCGCTTGC
GCACGCCATCTCCTACCAAATTACGATCGAACAAGGCGTGAAGCACGGAG
CAGCTTGCTCTTTCTCCCTTCCCAGAGTGATGCAAATGGCACTGGGGCAG
CAAGACCCGAGTCGGGACGCATTACTTCACGATATTTTTTCGGACATGAA
AGTGGCCGATGCGCTGGCTGGAAGAAGTGTCAGGCAGCCGTATGAGTATC
TAGAGAGATTTTTGAATGAAGAAGCAGGGGTATCCACAGCGCTAGAGGAC
TATGGTATTGCGGGCGAGAAGGACTTTTCGGAGCGAGTGAGGGAGGCTTT
ATGGCATCGGAGGGGGAGGAACTTCTTGTTGGCGGCTCATTTGAAGCGGT
AG
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Coding sequence (CDS) from alignment at chr7:1019936..1021337-

>NO07G03670.1 ID=NO07G03670.1|Name=NO07G03670.1|organism=Nannochloropsis oceanica|type=CDS|length=1197bp|location=Sequence derived from alignment at chr7:1019936..1021337- (Nannochloropsis oceanica)
ATGAGGCTGAGCGGCGCAGGCGTGAAGCGCTTCTGCAATCCTGTCAAGTT
AACTTTTACTGAATGGGGGAACTGGGAGCCTGTTATTCTGGAGGCGGTGG
GGAAAAGGAAGGCATTGCTAATGACGTATCCGCAAGCTGAGGCCTCAGAT
GGTCTCTTTTCCAACCTTCGCGCCGTCCTCGGCGAGGACAAGATGCTGTG
GGTCGCATGCCCGGAGCTTCCTGACATGAATGAACACAGAGGGCTGCACC
GTCGGATACGGAATTTTGTGCGGGATAGGGATGATTTCGTGATTGTAGCT
GTAGGAGGGGGCAGTGTGTTGGACTTGGCGAAGGTCATGAGTCTTGCACG
GAGCCAGATGGATTTTGAGGATGTCTTCACGGAGCGCATCGCAAGGGGGA
AGAGGATTGATAAATTGCGGCACGTGCCTGTGATTGCCGTACCCACGACA
GCGGGGACAGGATCGGAAGTCACTCCCTGGGCGGCCGTGTGGGACACCAA
GAAGAAGAAGAAGTGGTCGGTGCAAGGGCATAGCCTGTGGCCGGAGGCTG
CCATATTAGATCCCTCTCTCTCTGCGTCCTGCCCGAGGGAGGTCACGAGA
AACAGCGCGCTGGACGCCCTGAGCCATTCCCTTGAAGCCCTGTGGAACGT
GAATCACAACCCAATCTCCGATGTTTTGGCCGTGGCTGCCGCGAAGGGAA
TCATGGCCCACTTGCCCACCATCCTCTCGCAAGACGAGCGTGATGGCAGC
GATTGCGACCGGGAAATCGTCCAAGCACGCATCGGCCTCTCCACAGCCTC
CCTCCGCGCAGGTCTCGCTTTCAGTAACACCGAAACTGCGCTTGCGCACG
CCATCTCCTACCAAATTACGATCGAACAAGGCGTGAAGCACGGAGCAGCT
TGCTCTTTCTCCCTTCCCAGAGTGATGCAAATGGCACTGGGGCAGCAAGA
CCCGAGTCGGGACGCATTACTTCACGATATTTTTTCGGACATGAAAGTGG
CCGATGCGCTGGCTGGAAGAAGTGTCAGGCAGCCGTATGAGTATCTAGAG
AGATTTTTGAATGAAGAAGCAGGGGTATCCACAGCGCTAGAGGACTATGG
TATTGCGGGCGAGAAGGACTTTTCGGAGCGAGTGAGGGAGGCTTTATGGC
ATCGGAGGGGGAGGAACTTCTTGTTGGCGGCTCATTTGAAGCGGTAG
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Synonyms
Publications