NO07G03640.1, NO07G03640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03640.1
Unique NameNO07G03640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1152
Alignment locationchr7:1014126..1015814 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1014126..1015814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03640.1 vs.
Match: EWM27002.1 (cysteine synthase [Nannochloropsis gaditana])

HSP 1 Score: 653.3 bits (1684), Expect = 4.700e-184
Identity = 341/389 (87.66%), Postives = 361/389 (92.80%), Query Frame = 0 
Query:    7 VLLSASTASAFVAPAYHSARLAAAAAITRSSSKYRTMSSS-------------SSNGHGRGPSMLFQRPKVANDVTELIGNTPLVRLNRVTVGCQAEILAKLESMEPCNSVKDRIAYSMITEAENRGEISPGKTVLVEPTSGNTGIGLAMVAAAKGYELILTMPESMSMERRVLLKAFGANLVLTVASKGMKGAIAKAQEIVDSLGDKGYMLQQFENPDNPKIHLETTGPEIWTDTDGEIDILVGGVGTGGTMTGCAQYLKSKKSTCQAIAVEPRESAVLSGGQPGPHKIQGIGAGFVPQNADMTLFDEVQQVSSEESIEMARELAKKEGLLVGISSGAAVTAAIRVGSRPENANKKIVVVIPSFGERYLSTALFQNLWDDAARMSVQD 383
            V+  ASTASAFVAP YH+ARLAAAAAITR+SSKYR+MSSS              SNGH RGPSMLF+RPKVANDVTELIGNTPLVRLNRVTVGCQAE+LAKLESMEPCNSVKDRIAYSMITEAENRGEI+PGKTVLVEPTSGNTGIGLAMVAAAKGYELILTMPESMSMERRVLLKAFGANLVLTVASKGMKGAIAKAQEIVDSLGDK +MLQQFENPDNPKIHLETTGPEIWTDTDG++DILVGGVGTGGTMTGCAQYLK +KS+   +AVEPRESAVLSG QPGPHKIQGIGAGFVP+NADM++FDE+QQVSSEESI+MARELAKKEGLLVGISSGAAVTAAIRVGSRPENANKKIVV+IPSFGERYLSTALFQ LWDDAA+M   D
Sbjct:   18 VIAVASTASAFVAPGYHAARLAAAAAITRTSSKYRSMSSSPSSANRGTTSTNAQSNGHARGPSMLFERPKVANDVTELIGNTPLVRLNRVTVGCQAEVLAKLESMEPCNSVKDRIAYSMITEAENRGEIAPGKTVLVEPTSGNTGIGLAMVAAAKGYELILTMPESMSMERRVLLKAFGANLVLTVASKGMKGAIAKAQEIVDSLGDKAFMLQQFENPDNPKIHLETTGPEIWTDTDGQVDILVGGVGTGGTMTGCAQYLKGRKSSLITVAVEPRESAVLSGDQPGPHKIQGIGAGFVPRNADMSMFDEIQQVSSEESIDMARELAKKEGLLVGISSGAAVTAAIRVGSRPENANKKIVVIIPSFGERYLSTALFQTLWDDAAKMVTSD 406
The following BLAST results are available for this feature:
BLAST of NO07G03640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27002.14.700e-18487.66cysteine synthase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03640NO07G03640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03640.1NO07G03640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03640.1.cds1NO07G03640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03640.1.cds2NO07G03640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03640.1.cds3NO07G03640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03640.1.cds4NO07G03640.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03640.1 ID=NO07G03640.1|Name=NO07G03640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1152bp
ATGAAAGTTCCCAGCTTTGTTCTTTTGAGCGCATCTACGGCTTCTGCATT
TGTCGCGCCCGCCTACCACAGCGCCCGTCTTGCCGCCGCCGCCGCCATCA
CACGAAGCAGCAGCAAGTATCGCACAATGTCCTCCTCCAGCAGCAATGGG
CACGGGCGTGGTCCCTCCATGCTTTTTCAGCGGCCCAAGGTGGCCAATGA
CGTGACGGAACTGATTGGTAATACGCCCTTGGTGCGTTTGAACCGCGTGA
CGGTCGGGTGCCAGGCAGAGATTTTGGCCAAGCTGGAGTCTATGGAGCCC
TGCAACTCTGTGAAGGACCGCATTGCTTACAGCATGATCACCGAAGCCGA
GAACCGCGGAGAGATCAGTCCCGGCAAAACAGTGCTCGTGGAGCCTACCT
CGGGTAACACAGGCATTGGCCTGGCCATGGTGGCGGCCGCCAAAGGATAT
GAATTGATCTTGACCATGCCGGAGAGCATGTCGATGGAACGCCGTGTGTT
GCTCAAGGCTTTTGGGGCGAACCTGGTGCTGACCGTAGCCAGCAAGGGCA
TGAAGGGTGCCATTGCCAAAGCCCAGGAGATAGTGGACTCCCTGGGGGAT
AAGGGCTATATGCTGCAGCAGTTCGAGAATCCTGACAACCCAAAGATTCA
CCTAGAGACGACGGGGCCTGAGATTTGGACCGATACCGATGGGGAGATCG
ATATTCTCGTTGGCGGGGTCGGCACCGGCGGGACCATGACGGGATGTGCG
CAGTACCTTAAGTCTAAGAAGAGCACTTGTCAAGCCATTGCCGTCGAGCC
CCGCGAAAGCGCCGTCTTGTCCGGGGGTCAACCAGGTCCCCACAAAATCC
AAGGGATCGGCGCGGGCTTCGTGCCTCAAAACGCTGACATGACTTTATTT
GATGAAGTGCAGCAGGTATCGAGCGAGGAGTCGATTGAGATGGCGAGGGA
GCTGGCGAAGAAGGAAGGGCTGTTGGTAGGAATCTCGTCGGGCGCGGCCG
TCACGGCCGCCATCCGGGTAGGATCCAGGCCAGAAAATGCGAACAAGAAG
ATTGTTGTGGTCATTCCCTCGTTCGGAGAGAGGTATCTGTCGACAGCCTT
GTTCCAGAATCTTTGGGATGATGCCGCGAGAATGTCCGTCCAGGATTGCT
AA
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protein sequence of NO07G03640.1

>NO07G03640.1-protein ID=NO07G03640.1-protein|Name=NO07G03640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MKVPSFVLLSASTASAFVAPAYHSARLAAAAAITRSSSKYRTMSSSSSNG
HGRGPSMLFQRPKVANDVTELIGNTPLVRLNRVTVGCQAEILAKLESMEP
CNSVKDRIAYSMITEAENRGEISPGKTVLVEPTSGNTGIGLAMVAAAKGY
ELILTMPESMSMERRVLLKAFGANLVLTVASKGMKGAIAKAQEIVDSLGD
KGYMLQQFENPDNPKIHLETTGPEIWTDTDGEIDILVGGVGTGGTMTGCA
QYLKSKKSTCQAIAVEPRESAVLSGGQPGPHKIQGIGAGFVPQNADMTLF
DEVQQVSSEESIEMARELAKKEGLLVGISSGAAVTAAIRVGSRPENANKK
IVVVIPSFGERYLSTALFQNLWDDAARMSVQDC*
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mRNA from alignment at chr7:1014126..1015814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03640.1 ID=NO07G03640.1|Name=NO07G03640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at chr7:1014126..1015814- (Nannochloropsis oceanica)
ATGAAAGTTCCCAGCTTTGTTCTTTTGAGCGCATCTACGGGTAAGTGTTT
CGAAAATGGTGTGTGGAACTCTGCTTGTGGTCAGGAGTGTAGAGAATGAC
GATGGAGGAACCAGACACTGGAGGGCACTGTGTCCCTTTAGCCTTCATTC
ACCTGTGTACACACATAAAACAACCCCACACCCATGCACAAAGCTTCTGC
ATTTGTCGCGCCCGCCTACCACAGCGCCCGTCTTGCCGCCGCCGCCGCCA
TCACACGAAGCAGCAGCAAGTATCGCACAATGTCCTCCTCCAGCAGCAAT
GGGCACGGGCGTGGTCCCTCCATGCTTTTTCAGCGGCCCAAGGTGGCCAA
TGACGTGACGGAACTGATTGGTAATACGCCCTTGGTGCGTTTGAACCGCG
TGACGGTCGGGTGCCAGGCAGAGATTTTGGCCAAGCTGGAGTCTATGGAG
CCCTGCAACTCTGTGAAGGACCGCATTGCTTACAGGTAAAAGGAATAGCA
TGACAGCAAGAAGTGGTAGAGCTACTACAGAAAAGGCGCAGAGATCTATA
TATTCGAGCGCAGATCATTTTCGACAAAGCACTAATTCAAACTTTCCTCC
TTTCCCCCTTTCCCTCCATCCCTTCTTCCCTCCTTCCATCCCTCCTTCCC
ATTCTCCCTCCCTCTAGCATGATCACCGAAGCCGAGAACCGCGGAGAGAT
CAGTCCCGGCAAAACAGTGCTCGTGGAGCCTACCTCGGGTAACACAGGCA
TTGGCCTGGCCATGGTGGCGGCCGCCAAAGGATATGAATTGATCTTGACC
ATGCCGGAGAGCATGTCGATGGAACGCCGTGTGTTGCTCAAGGCTTTTGG
GGCGAACCTGGTGCTGACCGTAGCCAGCAAGGGCATGAAGGGTGCCATTG
CCAAAGCCCAGGAGATAGTGGACTCCCTGGGGGATAAGGGCTATATGCTG
CAGCAGTTCGAGAATCCTGACAACCCAAAGATTCACCTAGAGACGACGGG
GCCTGAGATTTGGACCGATACCGATGGGGAGGTAGGCTCCCTCCCTCCCT
CCCTCCTTTTCCTGACCCCATAACTTCTTTTGACAAACTATGTTGGGTCT
TTAGGGATGGAGCGACAAGCGTCTGCAATTGAAGACGGTACCTGGCATCA
ATGAGAGGGAGTTTCTAACTCTTAATCCCTCGCCCCTTCCCTCCCTCCCT
CCCTCCCTCCCTCCTCTCCTCTCACTCGTCTAGATCGATATTCTCGTTGG
CGGGGTCGGCACCGGCGGGACCATGACGGGATGTGCGCAGTACCTTAAGT
CTAAGAAGAGCACTTGTCAAGCCATTGCCGTCGAGCCCCGCGAAAGCGCC
GTCTTGTCCGGGGGTCAACCAGGTCCCCACAAAATCCAAGGGATCGGCGC
GGGCTTCGTGCCTCAAAACGCTGACATGACTTTATTTGATGAAGTGCAGC
AGGTATCGAGCGAGGAGTCGATTGAGATGGCGAGGGAGCTGGCGAAGAAG
GAAGGGCTGTTGGTAGGAATCTCGTCGGGCGCGGCCGTCACGGCCGCCAT
CCGGGTAGGATCCAGGCCAGAAAATGCGAACAAGAAGATTGTTGTGGTCA
TTCCCTCGTTCGGAGAGAGGTATCTGTCGACAGCCTTGTTCCAGAATCTT
TGGGATGATGCCGCGAGAATGTCCGTCCAGGATTGCTAA
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Coding sequence (CDS) from alignment at chr7:1014126..1015814-

>NO07G03640.1 ID=NO07G03640.1|Name=NO07G03640.1|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr7:1014126..1015814- (Nannochloropsis oceanica)
ATGAAAGTTCCCAGCTTTGTTCTTTTGAGCGCATCTACGGCTTCTGCATT
TGTCGCGCCCGCCTACCACAGCGCCCGTCTTGCCGCCGCCGCCGCCATCA
CACGAAGCAGCAGCAAGTATCGCACAATGTCCTCCTCCAGCAGCAATGGG
CACGGGCGTGGTCCCTCCATGCTTTTTCAGCGGCCCAAGGTGGCCAATGA
CGTGACGGAACTGATTGGTAATACGCCCTTGGTGCGTTTGAACCGCGTGA
CGGTCGGGTGCCAGGCAGAGATTTTGGCCAAGCTGGAGTCTATGGAGCCC
TGCAACTCTGTGAAGGACCGCATTGCTTACAGCATGATCACCGAAGCCGA
GAACCGCGGAGAGATCAGTCCCGGCAAAACAGTGCTCGTGGAGCCTACCT
CGGGTAACACAGGCATTGGCCTGGCCATGGTGGCGGCCGCCAAAGGATAT
GAATTGATCTTGACCATGCCGGAGAGCATGTCGATGGAACGCCGTGTGTT
GCTCAAGGCTTTTGGGGCGAACCTGGTGCTGACCGTAGCCAGCAAGGGCA
TGAAGGGTGCCATTGCCAAAGCCCAGGAGATAGTGGACTCCCTGGGGGAT
AAGGGCTATATGCTGCAGCAGTTCGAGAATCCTGACAACCCAAAGATTCA
CCTAGAGACGACGGGGCCTGAGATTTGGACCGATACCGATGGGGAGATCG
ATATTCTCGTTGGCGGGGTCGGCACCGGCGGGACCATGACGGGATGTGCG
CAGTACCTTAAGTCTAAGAAGAGCACTTGTCAAGCCATTGCCGTCGAGCC
CCGCGAAAGCGCCGTCTTGTCCGGGGGTCAACCAGGTCCCCACAAAATCC
AAGGGATCGGCGCGGGCTTCGTGCCTCAAAACGCTGACATGACTTTATTT
GATGAAGTGCAGCAGGTATCGAGCGAGGAGTCGATTGAGATGGCGAGGGA
GCTGGCGAAGAAGGAAGGGCTGTTGGTAGGAATCTCGTCGGGCGCGGCCG
TCACGGCCGCCATCCGGGTAGGATCCAGGCCAGAAAATGCGAACAAGAAG
ATTGTTGTGGTCATTCCCTCGTTCGGAGAGAGGTATCTGTCGACAGCCTT
GTTCCAGAATCTTTGGGATGATGCCGCGAGAATGTCCGTCCAGGATTGCT
AA
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Synonyms
Publications