NO07G03600.3, NO07G03600.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03600.3
Unique NameNO07G03600.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2003
Alignment locationchr7:992495..994697 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:992495..994697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G03600.3 vs.
Match: EWM27004.1 (nudix hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 296.2 bits (757), Expect = 9.400e-77
Identity = 139/207 (67.15%), Postives = 167/207 (80.68%), Query Frame = 0
Query:   34 GVIFYAFFISIRHLRTAGKQRGPFIWQVKGASSSHKGSCFCSAVDDSCWCGPSLGVDTILEYSEKENEPVTALVFIKRKDGRGMSCVGGFVQLGETVEEAVNRKVQEEIGTTSLNALRLLGVYSHSERDDRRHTASAVFVGKVHGKFKAGDDAKVVSVIPLQAMNVELIRLSFDHNHILKDYWYSLKETVVERNLMPRQGTSLCPAP 241
            GVI YA FISIRHLR  GKQRGPF+WQV+G S +HKGSCFCSA DD C CGPS+ VD ILEYSE +  PVTALVFIKR+D    +CVGGFVQLGET EEA++R+VQEEIGT +L+++RL+GVYSH +RDDRRHT SA +VG+V+G+ KAGDDAK +SVIPL+ MNVELI+L FDH  IL+ YWY   ++     L P++GTS CPAP
Sbjct:   42 GVIMYALFISIRHLRMVGKQRGPFVWQVQGISPTHKGSCFCSAKDDFCLCGPSVAVDAILEYSETKEGPVTALVFIKRRDRSITACVGGFVQLGETTEEALHREVQEEIGTNTLHSVRLIGVYSHPDRDDRRHTISAAYVGRVYGRLKAGDDAKSISVIPLKVMNVELIKLGFDHGDILRSYWYDRNQS--RTVLAPKRGTSTCPAP 246          
The following BLAST results are available for this feature:
BLAST of NO07G03600.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27004.19.400e-7767.15nudix hydrolase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03600NO07G03600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03600.3NO07G03600.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03600.3.cds1NO07G03600.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03600.3.cds2NO07G03600.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03600.3 ID=NO07G03600.3|Name=NO07G03600.3|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp
TGGCCGTGACATATTGATGTCTGTGAGATGGTGTGTAAGTCGAGGAGGAG
AGGATGGATTAGGGTGAGGGTGGTTGGGACGAGCAGAGCAGAACAAAGAA
GCACACAGCAACGTCACGGCTGTATGCAACCATCGCCTCGCTACAGAATG
TGTATCACAACGGCAGCCACATAATCTGCACTCCTAACGACTCGCCGGCC
TCATCGTGAATTTGTTGTTGGGCTTGGGATGCGGGGGCCCGCGAAGAAAT
GAAGGGGGAGGGAGCCAAGGAAGAAAACACGACCGCGTCGCCCGCAGTCC
TCCGCAAAAAATGACAGGCATCTTGGATGCACCAAGACGCCGACTGCAGC
AAGGACGGCGCGGGGGCTGTATAGAGGTGTGCGCAGTGTTGTTGGAACTG
TGAATTAGGATGGAAAGGAAAGACCAACCAAGGGGAACGAGGTCACTTGT
GAACCGAAATCTTGGACACTCGTTGATTGTTGTGGCCTCTTGCATCACAG
CCTAGAGAGCGTCGACGTTCTCGTCACGGCCATGCTCAAGCATGTTCACA
TCAAAGTGGCCCTTGGTCCTCCACTGCAAAGACACGCATTACAATTTTTG
GGCACTATACTGCCGGGCAGCACTGGTGGCCGCTGGGTTTCATACCCCCA
TGCACTCGACTCGAGCACGATGCTGCTGCCTGCTGCCCTGCTATGCCCCG
GCCTTGCCCTTCCTGGAGCGGGCATTAACGTACTTCTCTATTTCTTGACC
TGGCTCATTGCGCATATATCCTGCACACACTGACATCTCTTTGCTGAACC
ATCCACCACCCACATGAATGATCCCTCGCAAGGAGAGGGAAAGCAGCAGA
GGAGGCAGCAGCAGCATTCCTCTCCCTGCCTTAAGTCATGAACGACCTGG
TTTACCACCCCAGGCAAACTCCTCGGGGCCCACCCATCCCGGGTTTCAAA
CAAGCCTTCTATCCGTTGCTTCGCTTTATTTTCAACAACCCTATTTATAC
TGGTACGTGGGAGGGGGAAGAAATTGAGTAAAGAGTGGGAGAGATATTGC
CGCCCAAGCGGATGGGGATTACGAGGAAAGAGGGATGGATGCGTAGCTTG
CGTGTGCGCGCATTTTTTCCCTTGTTTGATCTATTGCACTGATTGTGGGA
ACCGAAGCTTGGCCGTGAGGTCCAGGCCGCGGCATGCCTTCTTATGCCCA
CCCATATTCGGAGGGAAAGGTTCCTGTCTTGTTGCTTTATAGCCCTTCCA
CACTCACTTCCAACCCCCGCCTCTCCCTTCAAGGTGTGATATTCTACGCC
TTCTTCATCAGCATTCGCCACCTCCGCACAGCAGGGAAGCAACGTGGCCC
ATTCATCTGGCAGGTTAAGGGCGCTTCCTCGTCCCACAAGGGCTCATGTT
TCTGTTCAGCTGTTGACGACTCCTGCTGGTGTGGACCTTCTTTGGGTGTG
GACACGATTCTGGAGTACAGCGAGAAGGAGAATGAGCCAGTGACGGCGTT
GGTATTCATCAAGCGGAAGGATGGGAGAGGGATGTCGTGTGTGGGTGGCT
TTGTACAGCTCGGCGAAACCGTGGAGGAAGCCGTTAACCGCAAAGTCCAA
GAAGAGATCGGCACTACCTCACTCAACGCCCTCCGTCTGCTTGGCGTGTA
CAGCCACTCTGAACGCGACGATCGGCGACACACCGCCAGTGCTGTATTTG
TGGGGAAGGTGCACGGAAAATTCAAAGCGGGGGATGACGCCAAGGTCGTG
TCTGTGATTCCCTTGCAAGCGATGAATGTAGAATTGATTAGGTTGTCGTT
TGACCATAATCACATTTTGAAAGATTACTGGTATTCATTGAAGGAGACGG
TGGTGGAGCGGAACCTCATGCCAAGACAGGGCACGAGCCTTTGCCCGGCC
CCACCGAGGGATGAAGACCGAAAGTAGTTGGAGAGAAATGAACCCACAAA
GTCATGAAGTTGAACACAATGCCAAAAGTACAATTATTCAACAGATATCC
CAT
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protein sequence of NO07G03600.3

>NO07G03600.3-protein ID=NO07G03600.3-protein|Name=NO07G03600.3|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MPSYAHPYSEGKVPVLLLYSPSTLTSNPRLSLQGVIFYAFFISIRHLRTA
GKQRGPFIWQVKGASSSHKGSCFCSAVDDSCWCGPSLGVDTILEYSEKEN
EPVTALVFIKRKDGRGMSCVGGFVQLGETVEEAVNRKVQEEIGTTSLNAL
RLLGVYSHSERDDRRHTASAVFVGKVHGKFKAGDDAKVVSVIPLQAMNVE
LIRLSFDHNHILKDYWYSLKETVVERNLMPRQGTSLCPAPPRDEDRK*
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mRNA from alignment at chr7:992495..994697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03600.3 ID=NO07G03600.3|Name=NO07G03600.3|organism=Nannochloropsis oceanica|type=mRNA|length=2203bp|location=Sequence derived from alignment at chr7:992495..994697+ (Nannochloropsis oceanica)
TGGCCGTGACATATTGATGTCTGTGAGATGGTGTGTAAGTCGAGGAGGAG AGGATGGATTAGGGTGAGGGTGGTTGGGACGAGCAGAGCAGAACAAAGAA GCACACAGCAACGTCACGGCTGTATGCAACCATCGCCTCGCTACAGAATG TGTATCACAACGGCAGCCACATAATCTGCACTCCTAACGACTCGCCGGCC TCATCGTGAATTTGTTGTTGGGCTTGGGATGCGGGGGCCCGCGAAGAAAT GAAGGGGGAGGGAGCCAAGGAAGAAAACACGACCGCGTCGCCCGCAGTCC TCCGCAAAAAATGACAGGCATCTTGGATGCACCAAGACGCCGACTGCAGC AAGGACGGCGCGGGGGCTGTATAGAGGTGTGCGCAGTGTTGTTGGAACTG TGAATTAGGATGGAAAGGAAAGACCAACCAAGGGGAACGAGGTCACTTGT GAACCGAAATCTTGGACACTCGTTGATTGTTGTGGCCTCTTGCATCACAG CCTAGAGAGCGTCGACGTTCTCGTCACGGCCATGCTCAAGCATGTTCACA TCAAAGTGGCCCTTGGTCCTCCACTGCAAAGACACGCATTACAATTTTTG GGCACTATACTGCCGGGCAGCACTGGTGGCCGCTGGGTTTCATACCCCCA TGCACTCGACTCGAGCACGATGCTGCTGCCTGCTGCCCTGCTATGCCCCG GCCTTGCCCTTCCTGGAGCGGGCATTAACGTACTTCTCTATTTCTTGACC TGGCTCATTGCGCATATATCCTGCACACACTGACATCTCTTTGCTGAACC ATCCACCACCCACATGAATGATCCCTCGCAAGGAGAGGGAAAGCAGCAGA GGAGGCAGCAGCAGCATTCCTCTCCCTGCCTTAAGTCATGAACGACCTGG TTTACCACCCCAGGCAAACTCCTCGGGGCCCACCCATCCCGGGTTTCAAA CAAGCCTTCTATCCGTTGCTTCGCTTTATTTTCAACAACCCTATTTATAC TGGTACGTGGGAGGGGGAAGAAATTGAGTAAAGAGTGGGAGAGATATTGC CGCCCAAGCGGATGGGGATTACGAGGAAAGAGGGATGGATGCGTAGCTTG CGTGTGCGCGCATTTTTTCCCTTGTTTGATCTATTGCACTGATTGTGGGA ACCGAAGCTTGGCCGTGAGGTCCAGGCCGCGGCATGCCTTCTTATGCCCA CCCATATTCGGAGGGAAAGGTTCCTGTCTTGTTGCTTTATAGCCCTTCCA CACTCACTTCCAACCCCCGCCTCTCCCTTCAAGGTGTGATATTCTACGCC TTCTTCATCAGCATTCGCCACCTCCGCACAGCAGGGAAGCAACGTGGCCC ATTCATCTGGCAGGTTAAGGGCGCTTCCTCGTCCCACAAGGGCTCATGTT TCTGTTCAGCTGTTGACGACTCCTGCTGGTGTGGACCTTCTTTGGGTGTG GACACGATTCTGGAGTACAGCGAGAAGGAGAATGAGCCAGTGACGGCGTT GGTATTCATCAAGCGGAAGGATGGGAGAGGGATGTCGTGTGTGGGTGGCT TTGTACAGCTCGGTGAGTTTGAATTTGGGAGGAGGGAGGAGAGGGAGGGA AAGAGGAGGGGGATATGGACGGGTAGGAGGGGTGCCGAAAGGAGGTTTAG TGGTCTTAAAAGGAGAAGGCGACGTTGCGGCTCTCTGTTGGGTGACTTTC TTTCCTTACTGCCTTCCCTCCCCTCCCTCCCTCCCGCACCTCCCTTTCAA TTTCCCCCTCAGGCGAAACCGTGGAGGAAGCCGTTAACCGCAAAGTCCAA GAAGAGATCGGCACTACCTCACTCAACGCCCTCCGTCTGCTTGGCGTGTA CAGCCACTCTGAACGCGACGATCGGCGACACACCGCCAGTGCTGTATTTG TGGGGAAGGTGCACGGAAAATTCAAAGCGGGGGATGACGCCAAGGTCGTG TCTGTGATTCCCTTGCAAGCGATGAATGTAGAATTGATTAGGTTGTCGTT TGACCATAATCACATTTTGAAAGATTACTGGTATTCATTGAAGGAGACGG TGGTGGAGCGGAACCTCATGCCAAGACAGGGCACGAGCCTTTGCCCGGCC CCACCGAGGGATGAAGACCGAAAGTAGTTGGAGAGAAATGAACCCACAAA GTCATGAAGTTGAACACAATGCCAAAAGTACAATTATTCAACAGATATCC CAT
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Coding sequence (CDS) from alignment at chr7:992495..994697+

>NO07G03600.3 ID=NO07G03600.3|Name=NO07G03600.3|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at chr7:992495..994697+ (Nannochloropsis oceanica)
ATGCCTTCTTATGCCCACCCATATTCGGAGGGAAAGGTTCCTGTCTTGTT
GCTTTATAGCCCTTCCACACTCACTTCCAACCCCCGCCTCTCCCTTCAAG
GTGTGATATTCTACGCCTTCTTCATCAGCATTCGCCACCTCCGCACAGCA
GGGAAGCAACGTGGCCCATTCATCTGGCAGGTTAAGGGCGCTTCCTCGTC
CCACAAGGGCTCATGTTTCTGTTCAGCTGTTGACGACTCCTGCTGGTGTG
GACCTTCTTTGGGTGTGGACACGATTCTGGAGTACAGCGAGAAGGAGAAT
GAGCCAGTGACGGCGTTGGTATTCATCAAGCGGAAGGATGGGAGAGGGAT
GTCGTGTGTGGGTGGCTTTGTACAGCTCGGCGAAACCGTGGAGGAAGCCG
TTAACCGCAAAGTCCAAGAAGAGATCGGCACTACCTCACTCAACGCCCTC
CGTCTGCTTGGCGTGTACAGCCACTCTGAACGCGACGATCGGCGACACAC
CGCCAGTGCTGTATTTGTGGGGAAGGTGCACGGAAAATTCAAAGCGGGGG
ATGACGCCAAGGTCGTGTCTGTGATTCCCTTGCAAGCGATGAATGTAGAA
TTGATTAGGTTGTCGTTTGACCATAATCACATTTTGAAAGATTACTGGTA
TTCATTGAAGGAGACGGTGGTGGAGCGGAACCTCATGCCAAGACAGGGCA
CGAGCCTTTGCCCGGCCCCACCGAGGGATGAAGACCGAAAGTAG
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Synonyms
Publications