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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:992495..994697 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03600.3 vs.
Match: EWM27004.1 (nudix hydrolase [Nannochloropsis gaditana]) HSP 1 Score: 296.2 bits (757), Expect = 9.400e-77 Identity = 139/207 (67.15%), Postives = 167/207 (80.68%), Query Frame = 0
Query: 34 GVIFYAFFISIRHLRTAGKQRGPFIWQVKGASSSHKGSCFCSAVDDSCWCGPSLGVDTILEYSEKENEPVTALVFIKRKDGRGMSCVGGFVQLGETVEEAVNRKVQEEIGTTSLNALRLLGVYSHSERDDRRHTASAVFVGKVHGKFKAGDDAKVVSVIPLQAMNVELIRLSFDHNHILKDYWYSLKETVVERNLMPRQGTSLCPAP 241
GVI YA FISIRHLR GKQRGPF+WQV+G S +HKGSCFCSA DD C CGPS+ VD ILEYSE + PVTALVFIKR+D +CVGGFVQLGET EEA++R+VQEEIGT +L+++RL+GVYSH +RDDRRHT SA +VG+V+G+ KAGDDAK +SVIPL+ MNVELI+L FDH IL+ YWY ++ L P++GTS CPAP
Sbjct: 42 GVIMYALFISIRHLRMVGKQRGPFVWQVQGISPTHKGSCFCSAKDDFCLCGPSVAVDAILEYSETKEGPVTALVFIKRRDRSITACVGGFVQLGETTEEALHREVQEEIGTNTLHSVRLIGVYSHPDRDDRRHTISAAYVGRVYGRLKAGDDAKSISVIPLKVMNVELIKLGFDHGDILRSYWYDRNQS--RTVLAPKRGTSTCPAP 246
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03600.3 ID=NO07G03600.3|Name=NO07G03600.3|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp TGGCCGTGACATATTGATGTCTGTGAGATGGTGTGTAAGTCGAGGAGGAG AGGATGGATTAGGGTGAGGGTGGTTGGGACGAGCAGAGCAGAACAAAGAA GCACACAGCAACGTCACGGCTGTATGCAACCATCGCCTCGCTACAGAATG TGTATCACAACGGCAGCCACATAATCTGCACTCCTAACGACTCGCCGGCC TCATCGTGAATTTGTTGTTGGGCTTGGGATGCGGGGGCCCGCGAAGAAAT GAAGGGGGAGGGAGCCAAGGAAGAAAACACGACCGCGTCGCCCGCAGTCC TCCGCAAAAAATGACAGGCATCTTGGATGCACCAAGACGCCGACTGCAGC AAGGACGGCGCGGGGGCTGTATAGAGGTGTGCGCAGTGTTGTTGGAACTG TGAATTAGGATGGAAAGGAAAGACCAACCAAGGGGAACGAGGTCACTTGT GAACCGAAATCTTGGACACTCGTTGATTGTTGTGGCCTCTTGCATCACAG CCTAGAGAGCGTCGACGTTCTCGTCACGGCCATGCTCAAGCATGTTCACA TCAAAGTGGCCCTTGGTCCTCCACTGCAAAGACACGCATTACAATTTTTG GGCACTATACTGCCGGGCAGCACTGGTGGCCGCTGGGTTTCATACCCCCA TGCACTCGACTCGAGCACGATGCTGCTGCCTGCTGCCCTGCTATGCCCCG GCCTTGCCCTTCCTGGAGCGGGCATTAACGTACTTCTCTATTTCTTGACC TGGCTCATTGCGCATATATCCTGCACACACTGACATCTCTTTGCTGAACC ATCCACCACCCACATGAATGATCCCTCGCAAGGAGAGGGAAAGCAGCAGA GGAGGCAGCAGCAGCATTCCTCTCCCTGCCTTAAGTCATGAACGACCTGG TTTACCACCCCAGGCAAACTCCTCGGGGCCCACCCATCCCGGGTTTCAAA CAAGCCTTCTATCCGTTGCTTCGCTTTATTTTCAACAACCCTATTTATAC TGGTACGTGGGAGGGGGAAGAAATTGAGTAAAGAGTGGGAGAGATATTGC CGCCCAAGCGGATGGGGATTACGAGGAAAGAGGGATGGATGCGTAGCTTG CGTGTGCGCGCATTTTTTCCCTTGTTTGATCTATTGCACTGATTGTGGGA ACCGAAGCTTGGCCGTGAGGTCCAGGCCGCGGCATGCCTTCTTATGCCCA CCCATATTCGGAGGGAAAGGTTCCTGTCTTGTTGCTTTATAGCCCTTCCA CACTCACTTCCAACCCCCGCCTCTCCCTTCAAGGTGTGATATTCTACGCC TTCTTCATCAGCATTCGCCACCTCCGCACAGCAGGGAAGCAACGTGGCCC ATTCATCTGGCAGGTTAAGGGCGCTTCCTCGTCCCACAAGGGCTCATGTT TCTGTTCAGCTGTTGACGACTCCTGCTGGTGTGGACCTTCTTTGGGTGTG GACACGATTCTGGAGTACAGCGAGAAGGAGAATGAGCCAGTGACGGCGTT GGTATTCATCAAGCGGAAGGATGGGAGAGGGATGTCGTGTGTGGGTGGCT TTGTACAGCTCGGCGAAACCGTGGAGGAAGCCGTTAACCGCAAAGTCCAA GAAGAGATCGGCACTACCTCACTCAACGCCCTCCGTCTGCTTGGCGTGTA CAGCCACTCTGAACGCGACGATCGGCGACACACCGCCAGTGCTGTATTTG TGGGGAAGGTGCACGGAAAATTCAAAGCGGGGGATGACGCCAAGGTCGTG TCTGTGATTCCCTTGCAAGCGATGAATGTAGAATTGATTAGGTTGTCGTT TGACCATAATCACATTTTGAAAGATTACTGGTATTCATTGAAGGAGACGG TGGTGGAGCGGAACCTCATGCCAAGACAGGGCACGAGCCTTTGCCCGGCC CCACCGAGGGATGAAGACCGAAAGTAGTTGGAGAGAAATGAACCCACAAA GTCATGAAGTTGAACACAATGCCAAAAGTACAATTATTCAACAGATATCC CAT back to topprotein sequence of NO07G03600.3 >NO07G03600.3-protein ID=NO07G03600.3-protein|Name=NO07G03600.3|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp MPSYAHPYSEGKVPVLLLYSPSTLTSNPRLSLQGVIFYAFFISIRHLRTA GKQRGPFIWQVKGASSSHKGSCFCSAVDDSCWCGPSLGVDTILEYSEKEN EPVTALVFIKRKDGRGMSCVGGFVQLGETVEEAVNRKVQEEIGTTSLNAL RLLGVYSHSERDDRRHTASAVFVGKVHGKFKAGDDAKVVSVIPLQAMNVE LIRLSFDHNHILKDYWYSLKETVVERNLMPRQGTSLCPAPPRDEDRK* back to topmRNA from alignment at chr7:992495..994697+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03600.3 ID=NO07G03600.3|Name=NO07G03600.3|organism=Nannochloropsis oceanica|type=mRNA|length=2203bp|location=Sequence derived from alignment at chr7:992495..994697+ (Nannochloropsis oceanica) TGGCCGTGACATATTGATGTCTGTGAGATGGTGTGTAAGTCGAGGAGGAG
AGGATGGATTAGGGTGAGGGTGGTTGGGACGAGCAGAGCAGAACAAAGAA
GCACACAGCAACGTCACGGCTGTATGCAACCATCGCCTCGCTACAGAATG
TGTATCACAACGGCAGCCACATAATCTGCACTCCTAACGACTCGCCGGCC
TCATCGTGAATTTGTTGTTGGGCTTGGGATGCGGGGGCCCGCGAAGAAAT
GAAGGGGGAGGGAGCCAAGGAAGAAAACACGACCGCGTCGCCCGCAGTCC
TCCGCAAAAAATGACAGGCATCTTGGATGCACCAAGACGCCGACTGCAGC
AAGGACGGCGCGGGGGCTGTATAGAGGTGTGCGCAGTGTTGTTGGAACTG
TGAATTAGGATGGAAAGGAAAGACCAACCAAGGGGAACGAGGTCACTTGT
GAACCGAAATCTTGGACACTCGTTGATTGTTGTGGCCTCTTGCATCACAG
CCTAGAGAGCGTCGACGTTCTCGTCACGGCCATGCTCAAGCATGTTCACA
TCAAAGTGGCCCTTGGTCCTCCACTGCAAAGACACGCATTACAATTTTTG
GGCACTATACTGCCGGGCAGCACTGGTGGCCGCTGGGTTTCATACCCCCA
TGCACTCGACTCGAGCACGATGCTGCTGCCTGCTGCCCTGCTATGCCCCG
GCCTTGCCCTTCCTGGAGCGGGCATTAACGTACTTCTCTATTTCTTGACC
TGGCTCATTGCGCATATATCCTGCACACACTGACATCTCTTTGCTGAACC
ATCCACCACCCACATGAATGATCCCTCGCAAGGAGAGGGAAAGCAGCAGA
GGAGGCAGCAGCAGCATTCCTCTCCCTGCCTTAAGTCATGAACGACCTGG
TTTACCACCCCAGGCAAACTCCTCGGGGCCCACCCATCCCGGGTTTCAAA
CAAGCCTTCTATCCGTTGCTTCGCTTTATTTTCAACAACCCTATTTATAC
TGGTACGTGGGAGGGGGAAGAAATTGAGTAAAGAGTGGGAGAGATATTGC
CGCCCAAGCGGATGGGGATTACGAGGAAAGAGGGATGGATGCGTAGCTTG
CGTGTGCGCGCATTTTTTCCCTTGTTTGATCTATTGCACTGATTGTGGGA
ACCGAAGCTTGGCCGTGAGGTCCAGGCCGCGGCATGCCTTCTTATGCCCA
CCCATATTCGGAGGGAAAGGTTCCTGTCTTGTTGCTTTATAGCCCTTCCA
CACTCACTTCCAACCCCCGCCTCTCCCTTCAAGGTGTGATATTCTACGCC
TTCTTCATCAGCATTCGCCACCTCCGCACAGCAGGGAAGCAACGTGGCCC
ATTCATCTGGCAGGTTAAGGGCGCTTCCTCGTCCCACAAGGGCTCATGTT
TCTGTTCAGCTGTTGACGACTCCTGCTGGTGTGGACCTTCTTTGGGTGTG
GACACGATTCTGGAGTACAGCGAGAAGGAGAATGAGCCAGTGACGGCGTT
GGTATTCATCAAGCGGAAGGATGGGAGAGGGATGTCGTGTGTGGGTGGCT
TTGTACAGCTCGGTGAGTTTGAATTTGGGAGGAGGGAGGAGAGGGAGGGA
AAGAGGAGGGGGATATGGACGGGTAGGAGGGGTGCCGAAAGGAGGTTTAG
TGGTCTTAAAAGGAGAAGGCGACGTTGCGGCTCTCTGTTGGGTGACTTTC
TTTCCTTACTGCCTTCCCTCCCCTCCCTCCCTCCCGCACCTCCCTTTCAA
TTTCCCCCTCAGGCGAAACCGTGGAGGAAGCCGTTAACCGCAAAGTCCAA
GAAGAGATCGGCACTACCTCACTCAACGCCCTCCGTCTGCTTGGCGTGTA
CAGCCACTCTGAACGCGACGATCGGCGACACACCGCCAGTGCTGTATTTG
TGGGGAAGGTGCACGGAAAATTCAAAGCGGGGGATGACGCCAAGGTCGTG
TCTGTGATTCCCTTGCAAGCGATGAATGTAGAATTGATTAGGTTGTCGTT
TGACCATAATCACATTTTGAAAGATTACTGGTATTCATTGAAGGAGACGG
TGGTGGAGCGGAACCTCATGCCAAGACAGGGCACGAGCCTTTGCCCGGCC
CCACCGAGGGATGAAGACCGAAAGTAGTTGGAGAGAAATGAACCCACAAA
GTCATGAAGTTGAACACAATGCCAAAAGTACAATTATTCAACAGATATCC
CAT back to topCoding sequence (CDS) from alignment at chr7:992495..994697+ >NO07G03600.3 ID=NO07G03600.3|Name=NO07G03600.3|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at chr7:992495..994697+ (Nannochloropsis oceanica) ATGCCTTCTTATGCCCACCCATATTCGGAGGGAAAGGTTCCTGTCTTGTT GCTTTATAGCCCTTCCACACTCACTTCCAACCCCCGCCTCTCCCTTCAAG GTGTGATATTCTACGCCTTCTTCATCAGCATTCGCCACCTCCGCACAGCA GGGAAGCAACGTGGCCCATTCATCTGGCAGGTTAAGGGCGCTTCCTCGTC CCACAAGGGCTCATGTTTCTGTTCAGCTGTTGACGACTCCTGCTGGTGTG GACCTTCTTTGGGTGTGGACACGATTCTGGAGTACAGCGAGAAGGAGAAT GAGCCAGTGACGGCGTTGGTATTCATCAAGCGGAAGGATGGGAGAGGGAT GTCGTGTGTGGGTGGCTTTGTACAGCTCGGCGAAACCGTGGAGGAAGCCG TTAACCGCAAAGTCCAAGAAGAGATCGGCACTACCTCACTCAACGCCCTC CGTCTGCTTGGCGTGTACAGCCACTCTGAACGCGACGATCGGCGACACAC CGCCAGTGCTGTATTTGTGGGGAAGGTGCACGGAAAATTCAAAGCGGGGG ATGACGCCAAGGTCGTGTCTGTGATTCCCTTGCAAGCGATGAATGTAGAA TTGATTAGGTTGTCGTTTGACCATAATCACATTTTGAAAGATTACTGGTA TTCATTGAAGGAGACGGTGGTGGAGCGGAACCTCATGCCAAGACAGGGCA CGAGCCTTTGCCCGGCCCCACCGAGGGATGAAGACCGAAAGTAG back to top
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