NO07G03540.1, NO07G03540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03540.1
Unique NameNO07G03540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length834
Alignment locationchr7:973101..973934 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:973101..973934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G03540.1 vs.
Match: EWM27019.1 (ubiquinone biosynthesis protein coq4 mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 377.1 bits (967), Expect = 4.700e-101
Identity = 188/257 (73.15%), Postives = 209/257 (81.32%), Query Frame = 0
Query:   15 RLLKRPRAFTTATILKNDESSIISPAPAPPGSDLYDTHIPTTPFQKLFIAGYSAATALRDPERGDMVAALGETTGLVALQSLREIMAADAVGCELLEAKPDIKEESVHPDRLRKLPPGTFGHEYACFMDHHGYSADERTAVRFVDDPELAFVIQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPVAAFSGLFGPLSLPATERKVLREQYIPWAVRTAVAAKPLMCVWYERRFDEPLNAMRAQLNITPAPPL 272
            R  KR R F+T T  ++      SP PA P + LY +HIPT+ FQKL+IAG+SAATA RDPERGDMVAALGETTG  ALQ LR  M+AD VG ELL AKPDIKE+S  PDRLR+LP GTFG EYA F+DHHGYS DER AVRFVDD ELAFV+QRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLP+AAFSG+ GPLSL A ERK+L+EQYIPWAVR AV A+PLMCVWYER F+EPL  MR +L I  APP+
Sbjct:   53 RTFKRMRPFST-TSSQSSGGKETSP-PAVPETPLYSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAPPM 307          
The following BLAST results are available for this feature:
BLAST of NO07G03540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27019.14.700e-10173.15ubiquinone biosynthesis protein coq4 mitochondrial... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03540NO07G03540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03540.1NO07G03540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03540.1.cds1NO07G03540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03540.1 ID=NO07G03540.1|Name=NO07G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=834bp
ATGACTTCCCCTCTACTTCGTTATGCCCTACGCTTGCCTGGCCGCCTCCT
CAAACGACCTCGTGCCTTTACCACAGCAACTATCCTCAAGAATGACGAAA
GCTCTATAATTTCTCCAGCGCCCGCCCCTCCTGGCTCCGATCTCTATGAC
ACCCACATTCCCACCACCCCTTTCCAAAAACTGTTCATTGCTGGCTACTC
GGCCGCCACTGCCCTCCGAGATCCCGAACGTGGTGACATGGTGGCCGCCT
TGGGAGAAACCACCGGACTGGTTGCCCTCCAAAGCCTGCGCGAAATTATG
GCCGCCGATGCGGTGGGATGCGAGCTGCTCGAGGCCAAGCCTGACATTAA
GGAGGAGTCCGTGCACCCAGACCGATTGCGAAAACTGCCCCCTGGAACCT
TCGGTCATGAATATGCATGCTTCATGGACCACCATGGCTATTCGGCCGAT
GAGCGCACGGCCGTTCGTTTTGTGGATGACCCGGAATTGGCCTTTGTGAT
CCAAAGGTATCGGCAAGTGCATGATTTTTGGCATGTTTTGTGTGGGTTGC
CCCCGACGGTGTTGGGGGAGCTGGCATTGAAATGGTTTGAGATGGTGCAA
ACTCGTCTGCCCGTTGCTGCATTTAGTGGTTTGTTTGGTCCCTTATCATT
ACCGGCGACTGAGCGGAAGGTATTGAGGGAGCAATACATTCCATGGGCTG
TCCGGACGGCGGTCGCGGCGAAGCCGTTGATGTGCGTGTGGTATGAACGA
AGGTTTGATGAGCCCTTGAACGCAATGCGTGCGCAATTGAATATTACGCC
AGCGCCGCCCTTGGTGCGGCCAACCAAGAAGTAA
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protein sequence of NO07G03540.1

>NO07G03540.1-protein ID=NO07G03540.1-protein|Name=NO07G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MTSPLLRYALRLPGRLLKRPRAFTTATILKNDESSIISPAPAPPGSDLYD
THIPTTPFQKLFIAGYSAATALRDPERGDMVAALGETTGLVALQSLREIM
AADAVGCELLEAKPDIKEESVHPDRLRKLPPGTFGHEYACFMDHHGYSAD
ERTAVRFVDDPELAFVIQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQ
TRLPVAAFSGLFGPLSLPATERKVLREQYIPWAVRTAVAAKPLMCVWYER
RFDEPLNAMRAQLNITPAPPLVRPTKK*
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mRNA from alignment at chr7:973101..973934+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03540.1 ID=NO07G03540.1|Name=NO07G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=834bp|location=Sequence derived from alignment at chr7:973101..973934+ (Nannochloropsis oceanica)
ATGACTTCCCCTCTACTTCGTTATGCCCTACGCTTGCCTGGCCGCCTCCT CAAACGACCTCGTGCCTTTACCACAGCAACTATCCTCAAGAATGACGAAA GCTCTATAATTTCTCCAGCGCCCGCCCCTCCTGGCTCCGATCTCTATGAC ACCCACATTCCCACCACCCCTTTCCAAAAACTGTTCATTGCTGGCTACTC GGCCGCCACTGCCCTCCGAGATCCCGAACGTGGTGACATGGTGGCCGCCT TGGGAGAAACCACCGGACTGGTTGCCCTCCAAAGCCTGCGCGAAATTATG GCCGCCGATGCGGTGGGATGCGAGCTGCTCGAGGCCAAGCCTGACATTAA GGAGGAGTCCGTGCACCCAGACCGATTGCGAAAACTGCCCCCTGGAACCT TCGGTCATGAATATGCATGCTTCATGGACCACCATGGCTATTCGGCCGAT GAGCGCACGGCCGTTCGTTTTGTGGATGACCCGGAATTGGCCTTTGTGAT CCAAAGGTATCGGCAAGTGCATGATTTTTGGCATGTTTTGTGTGGGTTGC CCCCGACGGTGTTGGGGGAGCTGGCATTGAAATGGTTTGAGATGGTGCAA ACTCGTCTGCCCGTTGCTGCATTTAGTGGTTTGTTTGGTCCCTTATCATT ACCGGCGACTGAGCGGAAGGTATTGAGGGAGCAATACATTCCATGGGCTG TCCGGACGGCGGTCGCGGCGAAGCCGTTGATGTGCGTGTGGTATGAACGA AGGTTTGATGAGCCCTTGAACGCAATGCGTGCGCAATTGAATATTACGCC AGCGCCGCCCTTGGTGCGGCCAACCAAGAAGTAA
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Coding sequence (CDS) from alignment at chr7:973101..973934+

>NO07G03540.1 ID=NO07G03540.1|Name=NO07G03540.1|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at chr7:973101..973934+ (Nannochloropsis oceanica)
ATGACTTCCCCTCTACTTCGTTATGCCCTACGCTTGCCTGGCCGCCTCCT
CAAACGACCTCGTGCCTTTACCACAGCAACTATCCTCAAGAATGACGAAA
GCTCTATAATTTCTCCAGCGCCCGCCCCTCCTGGCTCCGATCTCTATGAC
ACCCACATTCCCACCACCCCTTTCCAAAAACTGTTCATTGCTGGCTACTC
GGCCGCCACTGCCCTCCGAGATCCCGAACGTGGTGACATGGTGGCCGCCT
TGGGAGAAACCACCGGACTGGTTGCCCTCCAAAGCCTGCGCGAAATTATG
GCCGCCGATGCGGTGGGATGCGAGCTGCTCGAGGCCAAGCCTGACATTAA
GGAGGAGTCCGTGCACCCAGACCGATTGCGAAAACTGCCCCCTGGAACCT
TCGGTCATGAATATGCATGCTTCATGGACCACCATGGCTATTCGGCCGAT
GAGCGCACGGCCGTTCGTTTTGTGGATGACCCGGAATTGGCCTTTGTGAT
CCAAAGGTATCGGCAAGTGCATGATTTTTGGCATGTTTTGTGTGGGTTGC
CCCCGACGGTGTTGGGGGAGCTGGCATTGAAATGGTTTGAGATGGTGCAA
ACTCGTCTGCCCGTTGCTGCATTTAGTGGTTTGTTTGGTCCCTTATCATT
ACCGGCGACTGAGCGGAAGGTATTGAGGGAGCAATACATTCCATGGGCTG
TCCGGACGGCGGTCGCGGCGAAGCCGTTGATGTGCGTGTGGTATGAACGA
AGGTTTGATGAGCCCTTGAACGCAATGCGTGCGCAATTGAATATTACGCC
AGCGCCGCCCTTGGTGCGGCCAACCAAGAAGTAA
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Synonyms
Publications