NO07G03510.1, NO07G03510.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G03510.1
Unique Name	NO07G03510.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1623
Alignment location	chr7:969833..971455 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:969833..971455 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO07G03510.1 vs.

BLAST of NO07G03510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G03510	NO07G03510	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G03510.1	NO07G03510.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G03510.1.cds1	NO07G03510.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:969833..971455+
coding sequence from alignment at chr7:969833..971455+

mRNA sequence

>NO07G03510.1 ID=NO07G03510.1|Name=NO07G03510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp
ATGAGTGTGCTTGCAGCCGACGAGGCAGGCGAAGCAGCGGCTGCGGCCTT
CAGGGACCACGAGAGGAGAAAGCGGCGACGGCCCGCATTGGAGGAGGGTC
ACTCCAGCCCTCGTCGTTGTCCTCTTGTTATGAGTTACCAGGAGCATCCC
TCGGCGCTTACTATTCACGCAGCGTCCAGTCTAGATCAAGTTCAACGACA
ACATCGCAACGACCAAACGTCTGGGCCTAAGGCCGCATTAGTCCTCTCGG
AATGGCTGGGAAATGCTTTGGTCTGCCCGTCCTCCCCTTCCCAAAATCGC
GAGATCCATGTTTCCCTCTTAGGACAGCTCGTGGGAGCCGATGTAGCCCT
TCCACGGCACGTGGCCTTAATTTTGAGTTGTTTGGAGCATAGTTCCGATC
GGCGGGTGCGGCTTGAGGTGGTAGCTTTCTTGGCGGGGTTGACTCCAAAC
AATGTCTTCGAACACCTGCCCGTCTTGGCTGCACGTCTAGTCAGTGACCC
ATGTGCCACGATACGCATGGCAGTCCTCACAGCACTGTCGGGGCCATTCA
TTGCTTTATCGCAACCTTATGTGCCTTTGGTAATAGCCTGTCTGGAGGAC
ATGTCGGCCCCGGTCCGCCGAAGTGCAACCAAGGCACTAGTCCAAATCGG
GGGTAACGGCTTGCTTAAGCCAAAATACATCAATTCTTTGCGATATAATC
TCCTCTCTCGTTGCTCAGCCGTGCGTGAAGATAGCATGCAAGTGTTGTGC
GCCTTGCTCTATTTGACTCGTACGTGCTTTCGGGCGAAGCGATTGCTGGA
AGCACCACTGTGGAAGCAACACGGGGCAGTGGCCTCCTTAGCTGTGGCGC
GCGAGTCCAGCCCTGCCGTACGTGTCCTGGGTCTACAGTTTCTCACGGAT
CTTCCGCGGCATCTATGTGCACAACACGTGGGTATCGCTATTCAGCGTGT
GGGCGATGCCCGGCCGGAGGCACAGGCGGCAGCATTGACGTTCTTGCAAC
GTAACCTTGATCCGGATCTCCTTCGACCTCACGTGCATGCCCTCTTGCAG
CTCTTGCGTCCCTATCGGCCACACTCCTTCTCTTCTTCTTCTTACTCCTC
CTATTTGCCTTCCTCACTTTCGGCTCGTTGCGAATTGACGGTACTAAAGT
GCCTGCATTTGGTGCCAGAGCGAGCATTGGAGCCTTTCGTTGATGAAATA
ATTGCAGCTGTTAAAGCAGTGAAGGAGAGCAAGGACGAGAATGGTGGTCT
TGACAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGACGACGACATATTTAC
AATCTGTTCAGACTGCGGCTGTTGATGTGTTTGGATGCATGCGCACTGCA
GTAGTTTTGCCGCTGTTAGAAAAAACGTTGATGATATGGGTGTTTGGATG
TCTCTGTCCTCCTCTTCTTCCACCTCTCCATCCTTCTTCTACTCCATCTG
CTCCACCTTCCGTGCGAACGACGGACACCCTATTGGTCAGACAGGCAATG
AACATACTACAGCGGGTGCGGAACGCCGAAATAAAACAAGCCTGTCTTGC
AAGGCTAGCGACATCTTTAAGGGGGGGGGGGGGGGCAGCAACAGCATCCA
TTCCCACCAAGCACGGGTTCTGA

protein sequence of NO07G03510.1

>NO07G03510.1-protein ID=NO07G03510.1-protein|Name=NO07G03510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MSVLAADEAGEAAAAAFRDHERRKRRRPALEEGHSSPRRCPLVMSYQEHP
SALTIHAASSLDQVQRQHRNDQTSGPKAALVLSEWLGNALVCPSSPSQNR
EIHVSLLGQLVGADVALPRHVALILSCLEHSSDRRVRLEVVAFLAGLTPN
NVFEHLPVLAARLVSDPCATIRMAVLTALSGPFIALSQPYVPLVIACLED
MSAPVRRSATKALVQIGGNGLLKPKYINSLRYNLLSRCSAVREDSMQVLC
ALLYLTRTCFRAKRLLEAPLWKQHGAVASLAVARESSPAVRVLGLQFLTD
LPRHLCAQHVGIAIQRVGDARPEAQAAALTFLQRNLDPDLLRPHVHALLQ
LLRPYRPHSFSSSSYSSYLPSSLSARCELTVLKCLHLVPERALEPFVDEI
IAAVKAVKESKDENGGLDKQQQQQQQQQTTTYLQSVQTAAVDVFGCMRTA
VVLPLLEKTLMIWVFGCLCPPLLPPLHPSSTPSAPPSVRTTDTLLVRQAM
NILQRVRNAEIKQACLARLATSLRGGGGAATASIPTKHGF*

mRNA from alignment at chr7:969833..971455+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G03510.1 ID=NO07G03510.1|Name=NO07G03510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp|location=Sequence derived from alignment at chr7:969833..971455+ (Nannochloropsis oceanica)
ATGAGTGTGCTTGCAGCCGACGAGGCAGGCGAAGCAGCGGCTGCGGCCTT
CAGGGACCACGAGAGGAGAAAGCGGCGACGGCCCGCATTGGAGGAGGGTC
ACTCCAGCCCTCGTCGTTGTCCTCTTGTTATGAGTTACCAGGAGCATCCC
TCGGCGCTTACTATTCACGCAGCGTCCAGTCTAGATCAAGTTCAACGACA
ACATCGCAACGACCAAACGTCTGGGCCTAAGGCCGCATTAGTCCTCTCGG
AATGGCTGGGAAATGCTTTGGTCTGCCCGTCCTCCCCTTCCCAAAATCGC
GAGATCCATGTTTCCCTCTTAGGACAGCTCGTGGGAGCCGATGTAGCCCT
TCCACGGCACGTGGCCTTAATTTTGAGTTGTTTGGAGCATAGTTCCGATC
GGCGGGTGCGGCTTGAGGTGGTAGCTTTCTTGGCGGGGTTGACTCCAAAC
AATGTCTTCGAACACCTGCCCGTCTTGGCTGCACGTCTAGTCAGTGACCC
ATGTGCCACGATACGCATGGCAGTCCTCACAGCACTGTCGGGGCCATTCA
TTGCTTTATCGCAACCTTATGTGCCTTTGGTAATAGCCTGTCTGGAGGAC
ATGTCGGCCCCGGTCCGCCGAAGTGCAACCAAGGCACTAGTCCAAATCGG
GGGTAACGGCTTGCTTAAGCCAAAATACATCAATTCTTTGCGATATAATC
TCCTCTCTCGTTGCTCAGCCGTGCGTGAAGATAGCATGCAAGTGTTGTGC
GCCTTGCTCTATTTGACTCGTACGTGCTTTCGGGCGAAGCGATTGCTGGA
AGCACCACTGTGGAAGCAACACGGGGCAGTGGCCTCCTTAGCTGTGGCGC
GCGAGTCCAGCCCTGCCGTACGTGTCCTGGGTCTACAGTTTCTCACGGAT
CTTCCGCGGCATCTATGTGCACAACACGTGGGTATCGCTATTCAGCGTGT
GGGCGATGCCCGGCCGGAGGCACAGGCGGCAGCATTGACGTTCTTGCAAC
GTAACCTTGATCCGGATCTCCTTCGACCTCACGTGCATGCCCTCTTGCAG
CTCTTGCGTCCCTATCGGCCACACTCCTTCTCTTCTTCTTCTTACTCCTC
CTATTTGCCTTCCTCACTTTCGGCTCGTTGCGAATTGACGGTACTAAAGT
GCCTGCATTTGGTGCCAGAGCGAGCATTGGAGCCTTTCGTTGATGAAATA
ATTGCAGCTGTTAAAGCAGTGAAGGAGAGCAAGGACGAGAATGGTGGTCT
TGACAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGACGACGACATATTTAC
AATCTGTTCAGACTGCGGCTGTTGATGTGTTTGGATGCATGCGCACTGCA
GTAGTTTTGCCGCTGTTAGAAAAAACGTTGATGATATGGGTGTTTGGATG
TCTCTGTCCTCCTCTTCTTCCACCTCTCCATCCTTCTTCTACTCCATCTG
CTCCACCTTCCGTGCGAACGACGGACACCCTATTGGTCAGACAGGCAATG
AACATACTACAGCGGGTGCGGAACGCCGAAATAAAACAAGCCTGTCTTGC
AAGGCTAGCGACATCTTTAAGGGGGGGGGGGGGGGCAGCAACAGCATCCA
TTCCCACCAAGCACGGGTTCTGA

Coding sequence (CDS) from alignment at chr7:969833..971455+

>NO07G03510.1 ID=NO07G03510.1|Name=NO07G03510.1|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at chr7:969833..971455+ (Nannochloropsis oceanica)
ATGAGTGTGCTTGCAGCCGACGAGGCAGGCGAAGCAGCGGCTGCGGCCTT
CAGGGACCACGAGAGGAGAAAGCGGCGACGGCCCGCATTGGAGGAGGGTC
ACTCCAGCCCTCGTCGTTGTCCTCTTGTTATGAGTTACCAGGAGCATCCC
TCGGCGCTTACTATTCACGCAGCGTCCAGTCTAGATCAAGTTCAACGACA
ACATCGCAACGACCAAACGTCTGGGCCTAAGGCCGCATTAGTCCTCTCGG
AATGGCTGGGAAATGCTTTGGTCTGCCCGTCCTCCCCTTCCCAAAATCGC
GAGATCCATGTTTCCCTCTTAGGACAGCTCGTGGGAGCCGATGTAGCCCT
TCCACGGCACGTGGCCTTAATTTTGAGTTGTTTGGAGCATAGTTCCGATC
GGCGGGTGCGGCTTGAGGTGGTAGCTTTCTTGGCGGGGTTGACTCCAAAC
AATGTCTTCGAACACCTGCCCGTCTTGGCTGCACGTCTAGTCAGTGACCC
ATGTGCCACGATACGCATGGCAGTCCTCACAGCACTGTCGGGGCCATTCA
TTGCTTTATCGCAACCTTATGTGCCTTTGGTAATAGCCTGTCTGGAGGAC
ATGTCGGCCCCGGTCCGCCGAAGTGCAACCAAGGCACTAGTCCAAATCGG
GGGTAACGGCTTGCTTAAGCCAAAATACATCAATTCTTTGCGATATAATC
TCCTCTCTCGTTGCTCAGCCGTGCGTGAAGATAGCATGCAAGTGTTGTGC
GCCTTGCTCTATTTGACTCGTACGTGCTTTCGGGCGAAGCGATTGCTGGA
AGCACCACTGTGGAAGCAACACGGGGCAGTGGCCTCCTTAGCTGTGGCGC
GCGAGTCCAGCCCTGCCGTACGTGTCCTGGGTCTACAGTTTCTCACGGAT
CTTCCGCGGCATCTATGTGCACAACACGTGGGTATCGCTATTCAGCGTGT
GGGCGATGCCCGGCCGGAGGCACAGGCGGCAGCATTGACGTTCTTGCAAC
GTAACCTTGATCCGGATCTCCTTCGACCTCACGTGCATGCCCTCTTGCAG
CTCTTGCGTCCCTATCGGCCACACTCCTTCTCTTCTTCTTCTTACTCCTC
CTATTTGCCTTCCTCACTTTCGGCTCGTTGCGAATTGACGGTACTAAAGT
GCCTGCATTTGGTGCCAGAGCGAGCATTGGAGCCTTTCGTTGATGAAATA
ATTGCAGCTGTTAAAGCAGTGAAGGAGAGCAAGGACGAGAATGGTGGTCT
TGACAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGACGACGACATATTTAC
AATCTGTTCAGACTGCGGCTGTTGATGTGTTTGGATGCATGCGCACTGCA
GTAGTTTTGCCGCTGTTAGAAAAAACGTTGATGATATGGGTGTTTGGATG
TCTCTGTCCTCCTCTTCTTCCACCTCTCCATCCTTCTTCTACTCCATCTG
CTCCACCTTCCGTGCGAACGACGGACACCCTATTGGTCAGACAGGCAATG
AACATACTACAGCGGGTGCGGAACGCCGAAATAAAACAAGCCTGTCTTGC
AAGGCTAGCGACATCTTTAAGGGGGGGGGGGGGGGCAGCAACAGCATCCA
TTCCCACCAAGCACGGGTTCTGA

Synonyms

Publications