NO07G03500.1, NO07G03500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03500.1
Unique NameNO07G03500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1167
Alignment locationchr7:968007..969341 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:968007..969341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G03500.1 vs.
Match: EWM27018.1 (hypothetical protein Naga_100444g4 [Nannochloropsis gaditana])

HSP 1 Score: 516.2 bits (1328), Expect = 9.100e-143
Identity = 253/377 (67.11%), Postives = 293/377 (77.72%), Query Frame = 0
Query:   10 QEHYHVPPEQLESFRRDGVVVLPGVFTDHEVEEAKAGLAETLLQHGVDVDNLDETAGNLRSLSTTGGSGGVLDLFYPPWKLHLAQSPRFFSAISQLWAATYAAIPSNRHEEALPPLFSSHTEKSNKTHEIS---DAFFEDKLLYAHPYGAFDPTQGFFYLDRTGFRVPDRISQCHARGKRPLQRSLTPHLDCCPSALYSSDKQVKRWRPIQSFIALSDNRSPDTGGFECVKGWHRKFQAWADCRKPCRKTGKPAPCVGDFTPIRPEEDADVIAQFAPVLYPAGSVVAFDWRIPHANAARHVGEAPRQVSYGSFLPDVPVNRLYAQRQRERFLAGKQPDDQWKEDKDKIEIYENAEGEG-VFLFSELGSRLLGDGYVE 383
            ++ Y VPP+ LE+FRRDGVVVLPGVFT+ E+ EAK GLA TL  H VDV +L++TAGNLR LSTTGGSGGVLD+FY PWKL L+++PRFFSAISQLWAATYA   ++        +     E   +  E     DA  +++ LYAHP+G FDP +G+FYLDR GFRVPDRIS  HA+GKRPLQRSLTPHLDCCP+ALY+SDK V RWRP+QSF+AL+DN  P TGGFECVKGWHR FQ+WAD R  CR+TGK APCVGDFTPIRP EDA+VIA+FAPV Y AGSV+AFDWRIPHANA  HVG  PRQVSY SFLPDVPVNR YA+RQ +RF  G QPDDQWKE+ D  E+Y    G+G VF FS+LG RLLG G  E
Sbjct:    4 EDSYLVPPKLLEAFRRDGVVVLPGVFTEEEILEAKTGLATTLKIHEVDVQDLEKTAGNLRKLSTTGGSGGVLDIFYAPWKLRLSENPRFFSAISQLWAATYAEGRASSKGGVCMDVRRGTMEGQGEEREEERGIDATDDEQPLYAHPHGPFDPRRGYFYLDRCGFRVPDRISAQHAKGKRPLQRSLTPHLDCCPAALYTSDKAVPRWRPVQSFVALTDNLGPQTGGFECVKGWHRTFQSWADHRPTCRQTGKAAPCVGDFTPIRPVEDAEVIARFAPVYYQAGSVIAFDWRIPHANATHHVGPEPRQVSYASFLPDVPVNREYARRQAQRFYNGLQPDDQWKENSDSREVY----GDGSVFEFSDLGRRLLGFGAEE 376          
The following BLAST results are available for this feature:
BLAST of NO07G03500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27018.19.100e-14367.11hypothetical protein Naga_100444g4 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03500NO07G03500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03500.1NO07G03500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03500.1.cds1NO07G03500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03500.1.cds2NO07G03500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03500.1 ID=NO07G03500.1|Name=NO07G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp
ATGCCGGATGCCTATGAAGCCGCCGTACAAGAGCACTACCACGTCCCTCC
AGAACAACTTGAATCATTCCGTCGGGATGGCGTTGTTGTTCTTCCCGGAG
TCTTTACAGATCACGAGGTAGAAGAAGCCAAAGCCGGCCTTGCCGAGACA
CTGCTGCAGCATGGTGTGGATGTGGATAATCTCGACGAGACAGCTGGAAA
TTTGCGCAGTCTCTCCACCACAGGTGGTTCAGGAGGCGTGTTGGATCTCT
TTTACCCGCCATGGAAGCTACACCTCGCCCAGAGCCCTCGCTTCTTCAGC
GCCATTTCACAGCTCTGGGCCGCTACCTACGCTGCTATACCATCAAATCG
TCACGAGGAGGCACTTCCACCGCTCTTCTCTTCCCACACCGAAAAATCCA
ATAAAACACATGAAATCAGTGACGCCTTCTTCGAAGACAAGCTTCTATAT
GCCCACCCGTACGGGGCTTTTGACCCTACTCAAGGCTTCTTCTACCTGGA
CCGCACGGGGTTCCGCGTGCCCGACCGCATCAGTCAGTGCCATGCCAGGG
GTAAGCGCCCTCTACAACGCTCTCTCACCCCTCATCTAGATTGCTGCCCC
TCAGCTCTCTACTCGTCCGACAAACAAGTGAAACGATGGCGGCCCATCCA
AAGCTTCATAGCACTCAGTGACAACCGCTCCCCAGACACGGGTGGGTTCG
AGTGCGTCAAGGGTTGGCATCGCAAATTTCAGGCATGGGCAGATTGTCGA
AAGCCATGTAGGAAGACAGGGAAGCCCGCGCCGTGCGTCGGTGACTTTAC
TCCCATTCGTCCAGAGGAAGATGCGGACGTCATTGCTCAGTTCGCTCCCG
TGTTGTACCCTGCGGGAAGTGTAGTGGCTTTTGATTGGCGTATTCCTCAT
GCGAATGCTGCGAGGCATGTGGGCGAGGCACCTCGACAGGTGAGCTATGG
TAGTTTTTTGCCCGACGTTCCAGTCAATCGACTGTATGCGCAGCGGCAAC
GCGAACGATTCCTGGCAGGCAAGCAGCCGGACGATCAATGGAAAGAGGAC
AAGGACAAAATTGAGATCTACGAGAATGCGGAGGGAGAGGGTGTCTTTCT
ATTTTCTGAATTAGGGTCACGACTACTGGGGGATGGATATGTCGAAGACG
CTATAGTCAAAGCATAA
back to top

protein sequence of NO07G03500.1

>NO07G03500.1-protein ID=NO07G03500.1-protein|Name=NO07G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MPDAYEAAVQEHYHVPPEQLESFRRDGVVVLPGVFTDHEVEEAKAGLAET
LLQHGVDVDNLDETAGNLRSLSTTGGSGGVLDLFYPPWKLHLAQSPRFFS
AISQLWAATYAAIPSNRHEEALPPLFSSHTEKSNKTHEISDAFFEDKLLY
AHPYGAFDPTQGFFYLDRTGFRVPDRISQCHARGKRPLQRSLTPHLDCCP
SALYSSDKQVKRWRPIQSFIALSDNRSPDTGGFECVKGWHRKFQAWADCR
KPCRKTGKPAPCVGDFTPIRPEEDADVIAQFAPVLYPAGSVVAFDWRIPH
ANAARHVGEAPRQVSYGSFLPDVPVNRLYAQRQRERFLAGKQPDDQWKED
KDKIEIYENAEGEGVFLFSELGSRLLGDGYVEDAIVKA*
back to top

mRNA from alignment at chr7:968007..969341+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03500.1 ID=NO07G03500.1|Name=NO07G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp|location=Sequence derived from alignment at chr7:968007..969341+ (Nannochloropsis oceanica)
ATGCCGGATGCCTATGAAGCCGCCGTACAAGAGCACTACCACGTCCCTCC AGAACAACTTGAATCATTCCGTCGGGATGGCGTTGTTGTTCTTCCCGGAG TCTTTACAGATCACGAGGTAGAAGAAGCCAAAGCCGGCCTTGCCGAGACA CTGCTGCAGCATGGTGTGGTAAGTACCTGGTTGTGCGACGAGCACTTCCT CCTGGGCTGGAGCATTTAGAAAAGTGATACAGTCTATGTTATGTGGAGAG CTCTATATTGCGGGTCTCTGTTGCCCACATGAGAAGGGTCCTTATCTTGA TCCTCCACTCAGCGCCCCCTACCTCCGTAACTACAGGATGTGGATAATCT CGACGAGACAGCTGGAAATTTGCGCAGTCTCTCCACCACAGGTGGTTCAG GAGGCGTGTTGGATCTCTTTTACCCGCCATGGAAGCTACACCTCGCCCAG AGCCCTCGCTTCTTCAGCGCCATTTCACAGCTCTGGGCCGCTACCTACGC TGCTATACCATCAAATCGTCACGAGGAGGCACTTCCACCGCTCTTCTCTT CCCACACCGAAAAATCCAATAAAACACATGAAATCAGTGACGCCTTCTTC GAAGACAAGCTTCTATATGCCCACCCGTACGGGGCTTTTGACCCTACTCA AGGCTTCTTCTACCTGGACCGCACGGGGTTCCGCGTGCCCGACCGCATCA GTCAGTGCCATGCCAGGGGTAAGCGCCCTCTACAACGCTCTCTCACCCCT CATCTAGATTGCTGCCCCTCAGCTCTCTACTCGTCCGACAAACAAGTGAA ACGATGGCGGCCCATCCAAAGCTTCATAGCACTCAGTGACAACCGCTCCC CAGACACGGGTGGGTTCGAGTGCGTCAAGGGTTGGCATCGCAAATTTCAG GCATGGGCAGATTGTCGAAAGCCATGTAGGAAGACAGGGAAGCCCGCGCC GTGCGTCGGTGACTTTACTCCCATTCGTCCAGAGGAAGATGCGGACGTCA TTGCTCAGTTCGCTCCCGTGTTGTACCCTGCGGGAAGTGTAGTGGCTTTT GATTGGCGTATTCCTCATGCGAATGCTGCGAGGCATGTGGGCGAGGCACC TCGACAGGTGAGCTATGGTAGTTTTTTGCCCGACGTTCCAGTCAATCGAC TGTATGCGCAGCGGCAACGCGAACGATTCCTGGCAGGCAAGCAGCCGGAC GATCAATGGAAAGAGGACAAGGACAAAATTGAGATCTACGAGAATGCGGA GGGAGAGGGTGTCTTTCTATTTTCTGAATTAGGGTCACGACTACTGGGGG ATGGATATGTCGAAGACGCTATAGTCAAAGCATAA
back to top

Coding sequence (CDS) from alignment at chr7:968007..969341+

>NO07G03500.1 ID=NO07G03500.1|Name=NO07G03500.1|organism=Nannochloropsis oceanica|type=CDS|length=1167bp|location=Sequence derived from alignment at chr7:968007..969341+ (Nannochloropsis oceanica)
ATGCCGGATGCCTATGAAGCCGCCGTACAAGAGCACTACCACGTCCCTCC
AGAACAACTTGAATCATTCCGTCGGGATGGCGTTGTTGTTCTTCCCGGAG
TCTTTACAGATCACGAGGTAGAAGAAGCCAAAGCCGGCCTTGCCGAGACA
CTGCTGCAGCATGGTGTGGATGTGGATAATCTCGACGAGACAGCTGGAAA
TTTGCGCAGTCTCTCCACCACAGGTGGTTCAGGAGGCGTGTTGGATCTCT
TTTACCCGCCATGGAAGCTACACCTCGCCCAGAGCCCTCGCTTCTTCAGC
GCCATTTCACAGCTCTGGGCCGCTACCTACGCTGCTATACCATCAAATCG
TCACGAGGAGGCACTTCCACCGCTCTTCTCTTCCCACACCGAAAAATCCA
ATAAAACACATGAAATCAGTGACGCCTTCTTCGAAGACAAGCTTCTATAT
GCCCACCCGTACGGGGCTTTTGACCCTACTCAAGGCTTCTTCTACCTGGA
CCGCACGGGGTTCCGCGTGCCCGACCGCATCAGTCAGTGCCATGCCAGGG
GTAAGCGCCCTCTACAACGCTCTCTCACCCCTCATCTAGATTGCTGCCCC
TCAGCTCTCTACTCGTCCGACAAACAAGTGAAACGATGGCGGCCCATCCA
AAGCTTCATAGCACTCAGTGACAACCGCTCCCCAGACACGGGTGGGTTCG
AGTGCGTCAAGGGTTGGCATCGCAAATTTCAGGCATGGGCAGATTGTCGA
AAGCCATGTAGGAAGACAGGGAAGCCCGCGCCGTGCGTCGGTGACTTTAC
TCCCATTCGTCCAGAGGAAGATGCGGACGTCATTGCTCAGTTCGCTCCCG
TGTTGTACCCTGCGGGAAGTGTAGTGGCTTTTGATTGGCGTATTCCTCAT
GCGAATGCTGCGAGGCATGTGGGCGAGGCACCTCGACAGGTGAGCTATGG
TAGTTTTTTGCCCGACGTTCCAGTCAATCGACTGTATGCGCAGCGGCAAC
GCGAACGATTCCTGGCAGGCAAGCAGCCGGACGATCAATGGAAAGAGGAC
AAGGACAAAATTGAGATCTACGAGAATGCGGAGGGAGAGGGTGTCTTTCT
ATTTTCTGAATTAGGGTCACGACTACTGGGGGATGGATATGTCGAAGACG
CTATAGTCAAAGCATAA
back to top
Synonyms
Publications