NO07G03460.1, NO07G03460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03460.1
Unique NameNO07G03460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2252
Alignment locationchr7:955259..958039 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:955259..958039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03460.1 vs.
Match: EWM27021.1 (protein phosphatase 1a isoform 2 [Nannochloropsis gaditana])

HSP 1 Score: 497.7 bits (1280), Expect = 2.900e-137
Identity = 243/335 (72.54%), Postives = 286/335 (85.37%), Query Frame = 0 
Query:    1 MGAHLDKPITEKENYESEAHGLKFGAAAMQGWRVEMEDAHTIVETIDPELDGHSFIAVYDGHGGQYSAIYCGEHMVSFLKKTKGFEDYKKTRDVTHLRSAIHAAFLDLDEVLKRQDEFVSKQDTSGCTAICAIITPTHVVVGNAGDSRGVIFSSDGAKQLSRDHKPYLDDERKRIEEAGGMVSMQRVDGDLALSRSIGDFQYKDRHLPPERQKVTAVPEIEIHTRNAGKDEMLLLACDGVWDVCENEEAGQILKEVLNDGETRMALVAEELLDQCLFRYSKDNISAVVVGFEGM-ARHAKEGEGVEGRRRRR-----QQQEEGGGRGGSGGSGDE 330
            MG+HL KPITEKE+YES AHGL FGAAAMQGWRVEMEDAHT++ET+DPEL+GHSFIAVYDGHGGQYSAIY G+HMV F+++T  + +YKKT+DV HL++AIH+AFL+LDE LK QDEFV K DTSGCTAICAIITP+HVVV NAGDSR V++++ G  QLSRDHKPYL+DERKRIE AGGMVSMQRVDGDLALSRS+GDFQ+KDR+LPPERQKVTAVPE+++H R+  KD  LLLACDGVWDVCE+ EAG+I+ ++L DGE RMALVAEELLDQCL RYSKDN+SAVVVGF  +   H KEGEGVEGRRRRR     +++   GG+    G  ++
Sbjct:    1 MGSHLAKPITEKESYESNAHGLNFGAAAMQGWRVEMEDAHTVIETMDPELEGHSFIAVYDGHGGQYSAIYAGKHMVDFVRRTVAYTEYKKTKDVAHLQTAIHSAFLNLDESLKLQDEFVHKHDTSGCTAICAIITPSHVVVANAGDSRAVMYTTKGTHQLSRDHKPYLEDERKRIESAGGMVSMQRVDGDLALSRSLGDFQFKDRNLPPERQKVTAVPEVQVHVRDPEKDLCLLLACDGVWDVCESAEAGRIVFDILGDGEKRMALVAEELLDQCLLRYSKDNMSAVVVGFAKLWEEHGKEGEGVEGRRRRRLPAGEEEESNDGGKASERGKEEK 335
The following BLAST results are available for this feature:
BLAST of NO07G03460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27021.12.900e-13772.54protein phosphatase 1a isoform 2 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03460NO07G03460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03460.1NO07G03460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03460.1.cds1NO07G03460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03460.1.cds2NO07G03460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03460.1.cds3NO07G03460.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03460.1.cds4NO07G03460.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03460.1.cds5NO07G03460.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03460.1 ID=NO07G03460.1|Name=NO07G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2252bp
CGTCGTCGGGCCTTCCCAGACTCCTATGGTCGACCAAAATCACTTCAACC
ACACAACCACAACCACAATCTTTCAAATGATTACAACAGAGCTGTCTGCT
TGTCGATGGGGCATTGCAGGGTGCGAAGCCTGACTTCTGGGGCATAACAT
TGGCCACCGGGCAAGTAACGCGATCGAACTTCTAGTCGAAGTGATTATCT
GCCAGGGTTCACAATAGCTACGCCTAGGCATGGGTAGAGCGATGGCGACA
CACTCAGCTACGAGTAGGAGCATCAGCTCTGCCATCAGACTACGGCGCTG
GATCTGCCGATCGCCTTTTGCGAAAGCACACTCCACATGACGCGGAAAAC
ACGATGGATGCAAGCACCTTTTTCCCCTCTTCCCACACCCGAGGAACCAG
CTCTCATGAGTGCTGTGCACATCTAACAATGCTACGAAATATGGAATGAC
GTCTCTTCCTTCTCTTCACCCCTTCATTCCGCACAGAGAGAGAGAGGGAG
AGAGGCGTCTCTTCCATTAAGTCAAGCATGGGGGCGCACCTGGACAAGCC
CATCACCGAAAAAGAGAATTACGAGAGCGAGGCACATGGGTTAAAATTTG
GTGCAGCGGCCATGCAGGGATGGAGAGTAGAGATGGAGGACGCACACACC
ATCGTCGAGACAATTGACCCCGAGCTGGACGGACATTCCTTTATAGCAGT
CTACGATGGCCATGGGGGTCAATACTCGGCAATTTACTGCGGGGAGCACA
TGGTCTCGTTTTTAAAGAAGACCAAGGGTTTTGAGGACTACAAGAAGACG
AGAGACGTAACGCACCTGCGGTCCGCCATTCACGCCGCTTTCCTCGACCT
GGACGAGGTTCTGAAACGACAAGACGAATTTGTGTCCAAGCAGGACACCA
GCGGCTGCACCGCCATATGCGCCATAATCACACCCACGCATGTAGTGGTC
GGCAATGCCGGGGACTCCCGGGGAGTGATCTTCTCATCCGATGGAGCCAA
GCAGCTGTCAAGGGACCATAAGCCCTACCTGGACGATGAACGGAAGAGGA
TCGAGGAGGCGGGAGGGATGGTAAGCATGCAGAGGGTCGATGGTGATTTG
GCCTTGTCCCGGTCCATCGGGGATTTCCAATACAAAGACAGGCATCTCCC
GCCTGAGCGTCAGAAAGTCACCGCCGTACCCGAAATTGAGATTCACACGC
GGAACGCAGGCAAAGACGAAATGCTCCTCTTGGCCTGTGATGGTGTGTGG
GACGTATGCGAGAATGAGGAAGCAGGGCAGATTTTGAAGGAGGTATTGAA
CGACGGCGAAACGCGCATGGCCTTGGTAGCAGAAGAGCTGCTTGACCAGT
GTTTATTCAGGTATAGCAAGGACAATATTTCGGCGGTTGTGGTGGGGTTT
GAGGGAATGGCACGGCATGCGAAGGAGGGGGAGGGTGTGGAGGGGCGGCG
AAGGAGGAGGCAGCAGCAAGAGGAGGGGGGAGGTAGGGGAGGAAGTGGGG
GCTCCGGAGATGAGGCCGAGAGTTCGTAAGGGGGGGAAAGTGTGGGAGGA
GAGGAGGGAGGAGGGGAGGGAGGGCAGGATTTGAGACATGATGCAGTACT
AAAATATTGCATTGCGAAATGTCGTCAACGTTTGAGAACAACGGTAGCAG
CACCACCAACAGCAACACCAACACCAACACCACCACCAGCAGCAGCAGCA
GCAATAAGCAAGAGGGAAGGTCGACCAGCCAGCTACGACGAAGAAGGAAG
GAGGGAATCAGAGGGGGTAAGGGACGATACTCTCAAAAGCAGCGGCGAAA
AGGACCAACCCGCGAATGTTAAAAAGATAAAACTTCCTAGTAGAGAAAAA
GAGTCAGTCAGCGAACGTGTATGAGAGGACGAGAAAGGAAGATAGTGTGT
GAGTGTGTGATTATGAGCGAGATTGCATGATGGCCGGAAAAGGCGCATTT
TAAAAAAGAATGACAACAAAAGAAATAGAAGACCAACGCTCCATAAAGAA
AAGGATTAAAGGGTCGTCTTGAACCAAATAAATAGAAGACAACGCTCTTA
AAAAAAAGGAACATAGGGTTTAAGGGTTGCCTCAAACCAAATCAATCAAC
GCTCTAGGAAGAAAAGGGTTAGGGTCGCCTAATACCATCACACAGAAGAC
GCAGAAGAAAACCAACTCTTGAAAAAGAGAAGAAGAGAACATTTGCAATC
ACATCCAAGCATCTGTCTGTTTGACGGAGCTTGCCAGTGAGCAACACGAC
CA
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protein sequence of NO07G03460.1

>NO07G03460.1-protein ID=NO07G03460.1-protein|Name=NO07G03460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MGAHLDKPITEKENYESEAHGLKFGAAAMQGWRVEMEDAHTIVETIDPEL
DGHSFIAVYDGHGGQYSAIYCGEHMVSFLKKTKGFEDYKKTRDVTHLRSA
IHAAFLDLDEVLKRQDEFVSKQDTSGCTAICAIITPTHVVVGNAGDSRGV
IFSSDGAKQLSRDHKPYLDDERKRIEEAGGMVSMQRVDGDLALSRSIGDF
QYKDRHLPPERQKVTAVPEIEIHTRNAGKDEMLLLACDGVWDVCENEEAG
QILKEVLNDGETRMALVAEELLDQCLFRYSKDNISAVVVGFEGMARHAKE
GEGVEGRRRRRQQQEEGGGRGGSGGSGDEAESS*
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mRNA from alignment at chr7:955259..958039+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03460.1 ID=NO07G03460.1|Name=NO07G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2781bp|location=Sequence derived from alignment at chr7:955259..958039+ (Nannochloropsis oceanica)
CGTCGTCGGGCCTTCCCAGACTCCTATGGTCGACCAAAATCACTTCAACC
ACACAACCACAACCACAATCTTTCAAATGATTACAACAGAGCTGTCTGCT
TGTCGATGGGGCATTGCAGGGTGCGAAGCCTGACTTCTGGGGCATAACAT
TGGCCACCGGGCAAGTAACGCGATCGAACTTCTAGTCGAAGTGATTATCT
GCCAGGGTTCACAATAGCTACGCCTAGGCATGGGTAGAGCGATGGCGACA
CACTCAGCTACGAGTAGGAGCATCAGCTCTGCCATCAGACTACGGCGCTG
GATCTGCCGATCGCCTTTTGCGAAAGCACACTCCACATGACGCGGAAAAC
ACGATGGATGCAAGCACCTTTTTCCCCTCTTCCCACACCCGAGGAACCAG
CTCTCATGAGTGCTGTGCACATCTAACAATGCTACGAAATATGGAATGAC
GTCTCTTCCTTCTCTTCACCCCTTCATTCCGCACAGAGAGAGAGAGGGAG
AGAGGCGTCTCTTCCATTAAGTCAAGCATGGGGGCGCACCTGGACAAGCC
CATCACCGAAAAAGAGAATTACGAGAGCGAGGCACATGGGTTAAAATTTG
GTGCAGCGGCCATGCAGGTAGGCCTGTCTGATACATGCGATCCTGACTTA
AAAGACTGATTTGTGAGGTCCACCTCACCACAGCCAAACTTACCCCACAC
ACAATTCGAAACTCATGAACGAACAGGGATGGAGAGTAGAGATGGAGGAC
GCACACACCATCGTCGAGACAATTGGTAAGAAGACTTGAGAGGCGAGGGA
GGAGGGAAGTAACTCTCAGATGATAGAAAAATCTTCTACATGCCCACCAC
CATCCTAACTCTAACCTTAAGACACGAAGGAACCACAACCCTAATCCACA
CATTCTTCTTCTTTCTTCTCTCCCTTCTTCCCTCCTTGCATCAGACCCCG
AGCTGGACGGACATTCCTTTATAGCAGTCTACGATGGCCATGGGGGTCAA
TACTCGGCAATTTACTGCGGGGAGCACATGGTCTCGTTTTTAAAGAAGAC
CAAGGGTTTTGAGGACTACAAGAAGACGAGAGACGTAACGCACCTGCGGG
TGAGCCTCCCCTTCCTCCCTCCCTGCACTCCTTTCCATTCCTCCCTCCCT
CCCTCTTTTTTAGATTAGGTCTATCGTTTCCACCCACCCCTCCCAATCCC
CAACCACCAGTCCGCCATTCACGCCGCTTTCCTCGACCTGGACGAGGTTC
TGAAACGACAAGACGAATTTGTGTCCAAGCAGGACACCAGCGGCTGCACC
GCCATATGCGCCATAATCACACCCACGCATGTAGTGGTCGGCAATGCCGG
GGACTCCCGGGGAGTGATCTTCTCATCCGATGGAGCCAAGCAGCTGTCAA
GGGACCATAAGCCCTACCTGGACGATGAACGGAAGAGGATCGAGGAGGCG
GGAGGGATGGTAAGCATGCAGAGGGTCGATGGTGATTTGGCCTTGTCCCG
GTCCATCGGGGATTTCCAATACAAAGACAGGTAAGTCTCCCATCCCTCCT
TCCCCTCCCTCCTTCGCTCCCTCCTCCACAGTGTCCCCCAAAGGTCTCTT
CCTTATTTTCCCCTCTTCCCTCCCCCCCTCTCTCGCTCCCTCCCTCCTTC
CTCTCTTCCTCCACGCCCAGGCATCTCCCGCCTGAGCGTCAGAAAGTCAC
CGCCGTACCCGAAATTGAGATTCACACGCGGAACGCAGGCAAAGACGAAA
TGCTCCTCTTGGCCTGTGATGGTGTGTGGGACGTATGCGAGAATGAGGAA
GCAGGGCAGATTTTGAAGGAGGTATTGAACGACGGCGAAACGCGCATGGC
CTTGGTAGCAGAAGAGCTGCTTGACCAGTGTTTATTCAGGTATAGCAAGG
ACAATATTTCGGCGGTTGTGGTGGGGTTTGAGGGAATGGCACGGCATGCG
AAGGAGGGGGAGGGTGTGGAGGGGCGGCGAAGGAGGAGGCAGCAGCAAGA
GGAGGGGGGAGGTAGGGGAGGAAGTGGGGGCTCCGGAGATGAGGCCGAGA
GTTCGTAAGGGGGGGAAAGTGTGGGAGGAGAGGAGGGAGGAGGGGAGGGA
GGGCAGGATTTGAGACATGATGCAGTACTAAAATATTGCATTGCGAAATG
TCGTCAACGTTTGAGAACAACGGTAGCAGCACCACCAACAGCAACACCAA
CACCAACACCACCACCAGCAGCAGCAGCAGCAATAAGCAAGAGGGAAGGT
CGACCAGCCAGCTACGACGAAGAAGGAAGGAGGGAATCAGAGGGGGTAAG
GGACGATACTCTCAAAAGCAGCGGCGAAAAGGACCAACCCGCGAATGTTA
AAAAGATAAAACTTCCTAGTAGAGAAAAAGAGTCAGTCAGCGAACGTGTA
TGAGAGGACGAGAAAGGAAGATAGTGTGTGAGTGTGTGATTATGAGCGAG
ATTGCATGATGGCCGGAAAAGGCGCATTTTAAAAAAGAATGACAACAAAA
GAAATAGAAGACCAACGCTCCATAAAGAAAAGGATTAAAGGGTCGTCTTG
AACCAAATAAATAGAAGACAACGCTCTTAAAAAAAAGGAACATAGGGTTT
AAGGGTTGCCTCAAACCAAATCAATCAACGCTCTAGGAAGAAAAGGGTTA
GGGTCGCCTAATACCATCACACAGAAGACGCAGAAGAAAACCAACTCTTG
AAAAAGAGAAGAAGAGAACATTTGCAATCACATCCAAGCATCTGTCTGTT
TGACGGAGCTTGCCAGTGAGCAACACGACCA
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Coding sequence (CDS) from alignment at chr7:955259..958039+

>NO07G03460.1 ID=NO07G03460.1|Name=NO07G03460.1|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at chr7:955259..958039+ (Nannochloropsis oceanica)
ATGGGGGCGCACCTGGACAAGCCCATCACCGAAAAAGAGAATTACGAGAG
CGAGGCACATGGGTTAAAATTTGGTGCAGCGGCCATGCAGGGATGGAGAG
TAGAGATGGAGGACGCACACACCATCGTCGAGACAATTGACCCCGAGCTG
GACGGACATTCCTTTATAGCAGTCTACGATGGCCATGGGGGTCAATACTC
GGCAATTTACTGCGGGGAGCACATGGTCTCGTTTTTAAAGAAGACCAAGG
GTTTTGAGGACTACAAGAAGACGAGAGACGTAACGCACCTGCGGTCCGCC
ATTCACGCCGCTTTCCTCGACCTGGACGAGGTTCTGAAACGACAAGACGA
ATTTGTGTCCAAGCAGGACACCAGCGGCTGCACCGCCATATGCGCCATAA
TCACACCCACGCATGTAGTGGTCGGCAATGCCGGGGACTCCCGGGGAGTG
ATCTTCTCATCCGATGGAGCCAAGCAGCTGTCAAGGGACCATAAGCCCTA
CCTGGACGATGAACGGAAGAGGATCGAGGAGGCGGGAGGGATGGTAAGCA
TGCAGAGGGTCGATGGTGATTTGGCCTTGTCCCGGTCCATCGGGGATTTC
CAATACAAAGACAGGCATCTCCCGCCTGAGCGTCAGAAAGTCACCGCCGT
ACCCGAAATTGAGATTCACACGCGGAACGCAGGCAAAGACGAAATGCTCC
TCTTGGCCTGTGATGGTGTGTGGGACGTATGCGAGAATGAGGAAGCAGGG
CAGATTTTGAAGGAGGTATTGAACGACGGCGAAACGCGCATGGCCTTGGT
AGCAGAAGAGCTGCTTGACCAGTGTTTATTCAGGTATAGCAAGGACAATA
TTTCGGCGGTTGTGGTGGGGTTTGAGGGAATGGCACGGCATGCGAAGGAG
GGGGAGGGTGTGGAGGGGCGGCGAAGGAGGAGGCAGCAGCAAGAGGAGGG
GGGAGGTAGGGGAGGAAGTGGGGGCTCCGGAGATGAGGCCGAGAGTTCGT
AA
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Synonyms
Publications