NO07G03450.1, NO07G03450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03450.1
Unique NameNO07G03450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1636
Alignment locationchr7:953428..955160 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:953428..955160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03450.1 vs.
Match: EWM27020.1 (udp-n-acetylglucosamine pyrophosphorylase [Nannochloropsis gaditana])

HSP 1 Score: 707.2 bits (1824), Expect = 3.600e-200
Identity = 371/510 (72.75%), Postives = 407/510 (79.80%), Query Frame = 0 
Query:    8 ERLARVRAALKAAGQEHVLHFVDAGHATPHETTTLLDQVEALDLPALNNIFSGLGINKEVKPAAAAAADEYAPLSELASADSTPPTLLREWEQAGLGAIAQGKIAALVLGGGQGTRLGFDGPKGMYKIGLPSGKSIFQLLAERVLRVSTLAAS------SSSCCSNRKG--KHLPFYVMTSPLNHEATQHFFEENSYFGLTPADVFFFPQGTMPCFDLEGKLLLAGPGSLAQAPDGNGGIYPSLARTGALADMRQRGVEAFHVFSVDNVLIKVADPYFVGFCLSRGSDCGNMVVWKEGVEEKVGVVVRKNGRPAVVEYSEMDEGMKSLRHQQEEGGVERGKLVYGAGNICSHFFTVDFVEHVVVPRFGSVYHAARKMIPSLPPS-SSIHPPAAEVKTAGVKLEAFIFDVFPFSERMALWEVRREGMFAGVKDAPGGKGDTPEQARRMMSEEARRWVVKAGGKLVGGGEGGEE-----EVSEISPLVSYRGEGLEGRVKGKEVVLPILFLE 504
            ER+ARVR AL+ A Q+HVL +VDAG ATP ET +LL Q+EALDLP LN IF+GLGI      AAAA  DEYAPLS+LAS D+T P LLREWE+ GL AI +GK+AALVL GGQGTRLGFDGPKGMY IGLPSGKSIFQLLAER+LRVS LAA           C N     KH+PFYVMTSPLNHE TQ FF+EN+YFGL PADVFFF Q TMPCFDL+GKLLL  P SLAQAPDGNGGIYPSLARTGALADMR RG++AFHVFSVDNVLIKVADP F+GFCL+R SDCGNMVVWK+  EEKVGV+VRKNGRPAVVEYSEMD  M +LR   + G  E GKLVYGAGNICSHF T+DFVEHVV+PRFG+VYHAARKMIP+LP S +S  P     K AGVKLEAFIFDV PFSER+ALWEVRRE  FA VKDAPG   DTPE+AR M+S EA RWV +AGGK+VG GEGG E     E SEISPLVSYRGEGL  RV G EV LPI FL+
Sbjct:    9 ERIARVRLALRDACQDHVLSYVDAGLATPEETASLLTQIEALDLPELNRIFNGLGIEPSASVAAAAGNDEYAPLSDLASVDTTSPALLREWEEMGLDAIGRGKVAALVLSGGQGTRLGFDGPKGMYDIGLPSGKSIFQLLAERILRVSALAAERFLRSPEGKDCPNEGSTRKHIPFYVMTSPLNHEKTQDFFKENNYFGLCPADVFFFRQSTMPCFDLKGKLLLESPTSLAQAPDGNGGIYPSLARTGALADMRARGIDAFHVFSVDNVLIKVADPTFLGFCLARKSDCGNMVVWKKAAEEKVGVMVRKNGRPAVVEYSEMDTSMTTLREAGKAG--EEGKLVYGAGNICSHFLTLDFVEHVVLPRFGAVYHAARKMIPALPTSFASTFPVTVTEKVAGVKLEAFIFDVLPFSERVALWEVRREDAFAPVKDAPGSGSDTPERAREMLSAEAVRWVGRAGGKVVGQGEGGGEGGRGGEGSEISPLVSYRGEGLGERVGGMEVALPIRFLD 516
The following BLAST results are available for this feature:
BLAST of NO07G03450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27020.13.600e-20072.75udp-n-acetylglucosamine pyrophosphorylase [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03450NO07G03450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03450.1NO07G03450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03450.1.cds1NO07G03450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03450.1.cds2NO07G03450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03450.1 ID=NO07G03450.1|Name=NO07G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp
CTACACCTCCTCACAGAGCCATGGCGGAGGATCAAGGCGCTGAGCGGCTG
GCCCGTGTTCGCGCCGCCTTGAAAGCCGCAGGGCAAGAGCACGTCCTCCA
TTTTGTCGACGCGGGCCATGCTACGCCCCATGAGACTACCACCCTTCTTG
ACCAAGTCGAGGCACTGGACCTGCCAGCCCTGAACAATATTTTTTCGGGA
TTGGGAATCAATAAGGAGGTGAAACCAGCGGCGGCAGCTGCAGCGGACGA
GTACGCGCCGCTTTCGGAATTGGCCTCGGCTGATAGTACCCCTCCGACCC
TTCTCCGAGAATGGGAGCAAGCAGGCCTTGGCGCCATTGCCCAAGGCAAG
ATTGCGGCGTTGGTGTTAGGTGGTGGACAGGGAACTCGCCTAGGATTTGA
TGGTCCCAAGGGTATGTATAAAATTGGGTTGCCCTCGGGCAAGTCCATCT
TTCAGCTACTTGCTGAGAGAGTCTTGCGAGTCTCAACCCTCGCCGCGAGC
AGCAGCAGCTGCTGCAGCAACAGAAAGGGGAAGCATTTACCTTTCTATGT
CATGACCAGTCCTTTGAACCATGAGGCGACGCAACACTTTTTTGAGGAGA
ACTCTTACTTTGGATTGACGCCTGCAGATGTCTTTTTCTTCCCCCAGGGC
ACCATGCCGTGCTTTGATTTGGAGGGGAAGCTGTTGTTGGCAGGCCCAGG
GTCCCTTGCGCAGGCGCCCGATGGGAATGGAGGCATCTACCCCTCCCTCG
CCCGCACGGGCGCACTGGCCGATATGCGGCAGCGAGGCGTCGAGGCCTTC
CACGTCTTTAGCGTTGACAACGTATTGATCAAAGTGGCTGATCCATATTT
TGTTGGTTTTTGTCTGAGCCGTGGGAGTGATTGCGGGAACATGGTCGTTT
GGAAGGAGGGGGTCGAGGAGAAAGTAGGGGTGGTGGTGAGGAAGAACGGG
CGGCCGGCAGTGGTAGAATACAGTGAGATGGACGAGGGGATGAAGAGCCT
GAGACATCAGCAAGAGGAAGGTGGGGTAGAGAGAGGAAAATTGGTGTATG
GCGCGGGGAATATCTGCAGTCACTTTTTTACGGTCGATTTTGTTGAGCAC
GTAGTGGTACCTCGCTTCGGAAGCGTCTATCACGCGGCTCGGAAAATGAT
TCCCTCCCTCCCTCCCTCATCCTCCATCCATCCTCCCGCAGCGGAGGTAA
AGACCGCGGGTGTGAAATTAGAGGCTTTTATATTCGACGTGTTTCCTTTC
TCGGAGCGGATGGCTTTATGGGAGGTGCGAAGGGAGGGAATGTTCGCGGG
TGTCAAGGACGCTCCCGGGGGAAAAGGAGACACGCCTGAACAAGCTCGAA
GGATGATGTCGGAGGAGGCAAGGCGGTGGGTGGTCAAGGCGGGAGGGAAG
TTGGTGGGAGGGGGGGAGGGAGGGGAGGAAGAGGTCTCGGAAATCAGTCC
TTTGGTGTCGTACAGAGGGGAGGGATTGGAGGGGCGGGTGAAGGGGAAGG
AGGTGGTGCTACCGATTCTGTTCTTGGAGTGAGGGAAAGAATAGTGGGTG
CAAGGGAAGGAGGGAGGGAGGGGCGAGAGAAACTATGGTGCATGTGTTTT
GAGACGAAATGAGGCGGAAAATGAGGCGGAAAATGG
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protein sequence of NO07G03450.1

>NO07G03450.1-protein ID=NO07G03450.1-protein|Name=NO07G03450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MAEDQGAERLARVRAALKAAGQEHVLHFVDAGHATPHETTTLLDQVEALD
LPALNNIFSGLGINKEVKPAAAAAADEYAPLSELASADSTPPTLLREWEQ
AGLGAIAQGKIAALVLGGGQGTRLGFDGPKGMYKIGLPSGKSIFQLLAER
VLRVSTLAASSSSCCSNRKGKHLPFYVMTSPLNHEATQHFFEENSYFGLT
PADVFFFPQGTMPCFDLEGKLLLAGPGSLAQAPDGNGGIYPSLARTGALA
DMRQRGVEAFHVFSVDNVLIKVADPYFVGFCLSRGSDCGNMVVWKEGVEE
KVGVVVRKNGRPAVVEYSEMDEGMKSLRHQQEEGGVERGKLVYGAGNICS
HFFTVDFVEHVVVPRFGSVYHAARKMIPSLPPSSSIHPPAAEVKTAGVKL
EAFIFDVFPFSERMALWEVRREGMFAGVKDAPGGKGDTPEQARRMMSEEA
RRWVVKAGGKLVGGGEGGEEEVSEISPLVSYRGEGLEGRVKGKEVVLPIL
FLE*
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mRNA from alignment at chr7:953428..955160-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03450.1 ID=NO07G03450.1|Name=NO07G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1733bp|location=Sequence derived from alignment at chr7:953428..955160- (Nannochloropsis oceanica)
CTACACCTCCTCACAGAGCCATGGCGGAGGATCAAGGCGCTGAGCGGCTG
GCCCGTGTTCGCGCCGCCTTGAAAGCCGCAGGGCAAGAGCACGTCCTCCA
TTTTGTCGACGCGGGCCATGCTACGCCCCATGAGACTACCACCCTTCTTG
ACCAAGTCGAGGCACTGGACCTGCCAGCCCTGAACAATATTTTTTCGGGA
TTGGGAATCAATAAGGAGGTGAAACCAGCGGCGGCAGCTGCAGCGGACGA
GTACGCGCCGCTTTCGGAATTGGCCTCGGCTGATAGTACCCCTCCGACCC
TTCTCCGAGAATGGGAGCAAGCAGGCCTTGGCGCCATTGCCCAAGGCAAG
ATTGCGGCGTTGGTGTTAGGTGGTGGACAGGGAACTCGCCTAGGATTTGA
TGGTCCCAAGGGTATGTATAAAATTGGGTTGCCCTCGGGCAAGTCCATCT
TTCAGCTACTTGCTGAGAGAGTCTTGCGAGTCTCAACCCTCGCCGCGAGC
AGCAGCAGCTGCTGCAGCAACAGAAAGGGGAAGCATTTACCTTTCTATGT
CATGACCAGTCCTTTGAACCATGAGGCGACGCAACACTTTTTTGAGGAGA
ACTCTTACTTTGGATTGACGCCTGCAGATGTCTTTTTCTTCCCCCAGGGC
ACCATGCCGTGCTTTGATTTGGAGGGGAAGCTGTTGTTGGCAGGCCCAGG
GTCCCTTGCGCAGGCGCCCGATGGGAATGGAGGTACGTCTCTTCGAGAGA
TCTCTCACAATGAACGCGTTTGTTGTCACTCACCCCGATGTCGCCTCCTT
TCCCCTCTTCCTCCCTCGTGCCCGCACAGGCATCTACCCCTCCCTCGCCC
GCACGGGCGCACTGGCCGATATGCGGCAGCGAGGCGTCGAGGCCTTCCAC
GTCTTTAGCGTTGACAACGTATTGATCAAAGTGGCTGATCCATATTTTGT
TGGTTTTTGTCTGAGCCGTGGGAGTGATTGCGGGAACATGGTCGTTTGGA
AGGAGGGGGTCGAGGAGAAAGTAGGGGTGGTGGTGAGGAAGAACGGGCGG
CCGGCAGTGGTAGAATACAGTGAGATGGACGAGGGGATGAAGAGCCTGAG
ACATCAGCAAGAGGAAGGTGGGGTAGAGAGAGGAAAATTGGTGTATGGCG
CGGGGAATATCTGCAGTCACTTTTTTACGGTCGATTTTGTTGAGCACGTA
GTGGTACCTCGCTTCGGAAGCGTCTATCACGCGGCTCGGAAAATGATTCC
CTCCCTCCCTCCCTCATCCTCCATCCATCCTCCCGCAGCGGAGGTAAAGA
CCGCGGGTGTGAAATTAGAGGCTTTTATATTCGACGTGTTTCCTTTCTCG
GAGCGGATGGCTTTATGGGAGGTGCGAAGGGAGGGAATGTTCGCGGGTGT
CAAGGACGCTCCCGGGGGAAAAGGAGACACGCCTGAACAAGCTCGAAGGA
TGATGTCGGAGGAGGCAAGGCGGTGGGTGGTCAAGGCGGGAGGGAAGTTG
GTGGGAGGGGGGGAGGGAGGGGAGGAAGAGGTCTCGGAAATCAGTCCTTT
GGTGTCGTACAGAGGGGAGGGATTGGAGGGGCGGGTGAAGGGGAAGGAGG
TGGTGCTACCGATTCTGTTCTTGGAGTGAGGGAAAGAATAGTGGGTGCAA
GGGAAGGAGGGAGGGAGGGGCGAGAGAAACTATGGTGCATGTGTTTTGAG
ACGAAATGAGGCGGAAAATGAGGCGGAAAATGG
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Coding sequence (CDS) from alignment at chr7:953428..955160-

>NO07G03450.1 ID=NO07G03450.1|Name=NO07G03450.1|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at chr7:953428..955160- (Nannochloropsis oceanica)
ATGGCGGAGGATCAAGGCGCTGAGCGGCTGGCCCGTGTTCGCGCCGCCTT
GAAAGCCGCAGGGCAAGAGCACGTCCTCCATTTTGTCGACGCGGGCCATG
CTACGCCCCATGAGACTACCACCCTTCTTGACCAAGTCGAGGCACTGGAC
CTGCCAGCCCTGAACAATATTTTTTCGGGATTGGGAATCAATAAGGAGGT
GAAACCAGCGGCGGCAGCTGCAGCGGACGAGTACGCGCCGCTTTCGGAAT
TGGCCTCGGCTGATAGTACCCCTCCGACCCTTCTCCGAGAATGGGAGCAA
GCAGGCCTTGGCGCCATTGCCCAAGGCAAGATTGCGGCGTTGGTGTTAGG
TGGTGGACAGGGAACTCGCCTAGGATTTGATGGTCCCAAGGGTATGTATA
AAATTGGGTTGCCCTCGGGCAAGTCCATCTTTCAGCTACTTGCTGAGAGA
GTCTTGCGAGTCTCAACCCTCGCCGCGAGCAGCAGCAGCTGCTGCAGCAA
CAGAAAGGGGAAGCATTTACCTTTCTATGTCATGACCAGTCCTTTGAACC
ATGAGGCGACGCAACACTTTTTTGAGGAGAACTCTTACTTTGGATTGACG
CCTGCAGATGTCTTTTTCTTCCCCCAGGGCACCATGCCGTGCTTTGATTT
GGAGGGGAAGCTGTTGTTGGCAGGCCCAGGGTCCCTTGCGCAGGCGCCCG
ATGGGAATGGAGGCATCTACCCCTCCCTCGCCCGCACGGGCGCACTGGCC
GATATGCGGCAGCGAGGCGTCGAGGCCTTCCACGTCTTTAGCGTTGACAA
CGTATTGATCAAAGTGGCTGATCCATATTTTGTTGGTTTTTGTCTGAGCC
GTGGGAGTGATTGCGGGAACATGGTCGTTTGGAAGGAGGGGGTCGAGGAG
AAAGTAGGGGTGGTGGTGAGGAAGAACGGGCGGCCGGCAGTGGTAGAATA
CAGTGAGATGGACGAGGGGATGAAGAGCCTGAGACATCAGCAAGAGGAAG
GTGGGGTAGAGAGAGGAAAATTGGTGTATGGCGCGGGGAATATCTGCAGT
CACTTTTTTACGGTCGATTTTGTTGAGCACGTAGTGGTACCTCGCTTCGG
AAGCGTCTATCACGCGGCTCGGAAAATGATTCCCTCCCTCCCTCCCTCAT
CCTCCATCCATCCTCCCGCAGCGGAGGTAAAGACCGCGGGTGTGAAATTA
GAGGCTTTTATATTCGACGTGTTTCCTTTCTCGGAGCGGATGGCTTTATG
GGAGGTGCGAAGGGAGGGAATGTTCGCGGGTGTCAAGGACGCTCCCGGGG
GAAAAGGAGACACGCCTGAACAAGCTCGAAGGATGATGTCGGAGGAGGCA
AGGCGGTGGGTGGTCAAGGCGGGAGGGAAGTTGGTGGGAGGGGGGGAGGG
AGGGGAGGAAGAGGTCTCGGAAATCAGTCCTTTGGTGTCGTACAGAGGGG
AGGGATTGGAGGGGCGGGTGAAGGGGAAGGAGGTGGTGCTACCGATTCTG
TTCTTGGAGTGA
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Synonyms
Publications