NO07G03430.1, NO07G03430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03430.1
Unique NameNO07G03430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length396
Alignment locationchr7:948615..949449 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:948615..949449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03430.1 vs.
Match: EWM27023.1 (hypothetical protein Naga_100309g7 [Nannochloropsis gaditana])

HSP 1 Score: 189.1 bits (479), Expect = 8.700e-45
Identity = 93/129 (72.09%), Postives = 102/129 (79.07%), Query Frame = 0 
Query:    1 MSNKVLLLYSSLTSDAVQEQGQRRAHALLTAKGIEFTEIDGADPRNIEKRNELFRLGRKARYPQIYIERSDGKINYVGGWEEVEAMNECCDMPKEILRANPHIQTFDQVFIHVKRTKRNSLGLPPAASS 130
            M NKVLLL SSLTSDAVQE+ QRRA +LL AKG  F EIDGADP   EKRN+LF LG  ARYPQ +IER DGK+ YVGGWEEVEAMNEC DMP E+LRANP IQTFD VF HV+R KR+S+   P ASS
Sbjct:    1 MHNKVLLLVSSLTSDAVQEKEQRRARSLLEAKGTVFEEIDGADPLMTEKRNQLFGLGHTARYPQFFIEREDGKVTYVGGWEEVEAMNECSDMPVEVLRANPQIQTFDMVFAHVQRRKRSSVAAVPVASS 129
The following BLAST results are available for this feature:
BLAST of NO07G03430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27023.18.700e-4572.09hypothetical protein Naga_100309g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03430NO07G03430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03430.1NO07G03430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03430.1.cds1NO07G03430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03430.1.cds2NO07G03430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03430.1 ID=NO07G03430.1|Name=NO07G03430.1|organism=Nannochloropsis oceanica|type=mRNA|length=396bp
ATGTCCAATAAGGTGCTCCTCCTATATTCGAGTCTGACATCGGATGCGGT
GCAAGAGCAAGGCCAACGGCGGGCGCACGCCCTCCTGACAGCCAAAGGCA
TCGAGTTTACAGAGATCGATGGAGCGGATCCGAGGAATATAGAGAAACGG
AACGAGCTGTTCCGATTGGGGCGGAAGGCGCGATACCCTCAGATTTACAT
CGAGAGGAGTGATGGAAAGATAAATTACGTGGGGGGATGGGAGGAGGTAG
AGGCCATGAACGAGTGTTGTGACATGCCCAAGGAGATTTTGAGGGCGAAT
CCGCATATTCAGACATTCGATCAGGTGTTTATCCATGTGAAGAGGACAAA
GAGAAATAGCCTCGGCTTGCCGCCGGCGGCGTCTTCGTATTCATAG
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protein sequence of NO07G03430.1

>NO07G03430.1-protein ID=NO07G03430.1-protein|Name=NO07G03430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MSNKVLLLYSSLTSDAVQEQGQRRAHALLTAKGIEFTEIDGADPRNIEKR
NELFRLGRKARYPQIYIERSDGKINYVGGWEEVEAMNECCDMPKEILRAN
PHIQTFDQVFIHVKRTKRNSLGLPPAASSYS*
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mRNA from alignment at chr7:948615..949449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03430.1 ID=NO07G03430.1|Name=NO07G03430.1|organism=Nannochloropsis oceanica|type=mRNA|length=835bp|location=Sequence derived from alignment at chr7:948615..949449- (Nannochloropsis oceanica)
ATGTCCAATAAGGTAAGGAGGAATAGCAAGAGAACGAGAAACTGCAGGAG
CAGCGGCAGCCGCAGCAGTTCGAGAAGGAGTATGAAGGGGTTGGGTGAGT
GGAGTGGAGCAGGCCATTGTTTTAGGAAGCGGGCTTTCCAAATCAACCGG
GCTCCTCCGCATTGCAGCCCCTTCCTCCTGTGGTGTCCGTTCCTTTTCCC
CATCCTACCATTTCTGTGAATCTTGTCATAGATGTCGCTGTATTTTGCGC
TTGATGTCCCCGAACCTTCCGTATGCCTTACCTCCCCCTTATGACCCCTC
CTTCCCCCGCTCGACCACCTCCCCACCCCTCCATCCCGCTGCATCACCAC
GAGATCACCGCAAGAAGCCCGTATTGATGTAGTCAGAAGATCTAGTTGAT
CACCTTTTCCCTAGGTCCATCTCTCCCCTCCCTTCCCCTCTCCCCCTGCA
GGTGCTCCTCCTATATTCGAGTCTGACATCGGATGCGGTGCAAGAGCAAG
GCCAACGGCGGGCGCACGCCCTCCTGACAGCCAAAGGCATCGAGTTTACA
GAGATCGATGGAGCGGATCCGAGGAATATAGAGAAACGGAACGAGCTGTT
CCGATTGGGGCGGAAGGCGCGATACCCTCAGATTTACATCGAGAGGAGTG
ATGGAAAGATAAATTACGTGGGGGGATGGGAGGAGGTAGAGGCCATGAAC
GAGTGTTGTGACATGCCCAAGGAGATTTTGAGGGCGAATCCGCATATTCA
GACATTCGATCAGGTGTTTATCCATGTGAAGAGGACAAAGAGAAATAGCC
TCGGCTTGCCGCCGGCGGCGTCTTCGTATTCATAG
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Coding sequence (CDS) from alignment at chr7:948615..949449-

>NO07G03430.1 ID=NO07G03430.1|Name=NO07G03430.1|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at chr7:948615..949449- (Nannochloropsis oceanica)
ATGTCCAATAAGGTGCTCCTCCTATATTCGAGTCTGACATCGGATGCGGT
GCAAGAGCAAGGCCAACGGCGGGCGCACGCCCTCCTGACAGCCAAAGGCA
TCGAGTTTACAGAGATCGATGGAGCGGATCCGAGGAATATAGAGAAACGG
AACGAGCTGTTCCGATTGGGGCGGAAGGCGCGATACCCTCAGATTTACAT
CGAGAGGAGTGATGGAAAGATAAATTACGTGGGGGGATGGGAGGAGGTAG
AGGCCATGAACGAGTGTTGTGACATGCCCAAGGAGATTTTGAGGGCGAAT
CCGCATATTCAGACATTCGATCAGGTGTTTATCCATGTGAAGAGGACAAA
GAGAAATAGCCTCGGCTTGCCGCCGGCGGCGTCTTCGTATTCATAG
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Synonyms
Publications