NO07G03390.1, NO07G03390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03390.1
Unique NameNO07G03390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1984
Alignment locationchr7:930323..932306 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:930323..932306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03390.1 vs.
Match: EWM27064.1 (hypothetical protein Naga_100056g5 [Nannochloropsis gaditana])

HSP 1 Score: 287.0 bits (733), Expect = 9.600e-74
Identity = 156/280 (55.71%), Postives = 197/280 (70.36%), Query Frame = 0 
Query:   66 QFLSPCSPSLASPHTRQAHLTTKCVLLTVGIIASLAWAVGLAAVLLPEWTVEDANVDSTLNAHIGLFETIYHVGEVRESSTLRFCNGLGPIYSTEKCVMWRVAQISALVGLGMGYTGLLFLYSAVGKSWIRPRRMPEVVAWVWTFFLLAGVCALASATAWKFLVLAFMRDHGKLGDGYSVKMGVSMLLMAGVGVIFLTLPFWRIVTQYWLVGSGSIAGFYRGRKSSLPSSSEASAVAETAGNSSSSSSRSNSSCGSSSGGGNKSRVQRPPHRHSFNKEGI 346
            Q LS CSPS  SP++R   +T K V L   IIA+LAW +GLAAVLLPEWTVEDANV STL+AHIGLFETIYHVGEVRESST RFCNGLGP+YSTEKCV WR++QI+AL+ LGMGYTG+L L+  +G SWIRP+ +  + AWVW  FL AGVC + SA AW  LVLAF+RDH +L DGYSV MG+SM +MA +G +F++LP WR+V +  ++   S +G   GR   +   +  +A  E+AG   SS  +S +  G  SG G+ S   R  +     +EG+
Sbjct:    6 QHLSTCSPSWLSPNSRLKQITAKRVFLATFIIATLAWGLGLAAVLLPEWTVEDANVQSTLDAHIGLFETIYHVGEVRESSTPRFCNGLGPMYSTEKCVWWRISQITALLSLGMGYTGVLLLFLVIGSSWIRPQHVYSLAAWVWNIFLFAGVCGIGSAAAWNLLVLAFLRDHRELQDGYSVHMGLSMFVMAAMGAVFISLPLWRMVFERCILTWSSSSGTLAGR---MWPFATRNASLESAG---SSKIQSGNFPGHKSGQGSGSGCARTGNALVNEEEGV 279
The following BLAST results are available for this feature:
BLAST of NO07G03390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27064.19.600e-7455.71hypothetical protein Naga_100056g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03390NO07G03390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03390.1NO07G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03390.1.cds1NO07G03390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03390.1 ID=NO07G03390.1|Name=NO07G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp
CCAGGAATGCTTCTTTCTTGCTCTTCCTCCACCTTCTTCAAAGATCATCA
AGCCCACAAAATGCTCACTTCCTTGTCATATCACCCCAAGCGCAGACGGC
TGAGTCCAGTCCACGTGCCAATCCCCCTCGGTATGGCCCCTTTTCCATCC
AAACCACACCAATCAGCGATGGGACTTTGCCCCCTGCAAGCTACGGAACT
CCAGTTCCTATCGCCCTGTTCCCCCTCTCTGGCATCGCCCCACACCCGTC
AGGCCCATCTCACTACGAAATGTGTCCTCTTGACCGTAGGCATCATTGCC
AGCTTGGCCTGGGCCGTGGGGTTGGCCGCCGTCTTGCTTCCAGAGTGGAC
TGTCGAGGACGCCAATGTCGACAGCACTCTCAATGCCCACATCGGGCTCT
TCGAGACCATCTACCACGTCGGAGAAGTCCGGGAGTCCTCCACCCTTCGA
TTCTGCAATGGTTTGGGTCCAATTTATTCGACGGAAAAATGCGTCATGTG
GCGCGTGGCACAAATTAGCGCGTTGGTTGGACTAGGCATGGGATACACGG
GCCTTCTCTTCTTATACAGTGCGGTGGGGAAGAGTTGGATCCGTCCTCGG
AGAATGCCAGAGGTGGTCGCGTGGGTGTGGACATTCTTTCTACTGGCAGG
TGTGTGTGCATTAGCAAGCGCGACTGCGTGGAAGTTTTTGGTGTTGGCTT
TCATGCGGGACCATGGCAAGTTGGGTGATGGGTACTCGGTAAAAATGGGC
GTATCGATGCTGCTTATGGCGGGGGTAGGTGTGATCTTTCTGACTTTGCC
ATTCTGGAGAATAGTGACGCAGTATTGGTTGGTGGGTAGTGGTAGTATAG
CTGGATTTTATAGGGGGAGGAAGAGTTCGTTGCCGTCGTCGTCAGAGGCA
TCAGCTGTAGCAGAGACAGCGGGGAACAGCAGCAGCAGTAGCAGCCGCAG
CAACAGCAGCTGCGGCAGTAGCAGCGGCGGTGGCAACAAGTCTCGTGTTC
AGAGACCACCTCATCGTCATAGCTTCAACAAGGAGGGGATCTCACGCTGG
CGAAAACGGGCGGCGGACATCCTGCAATTGCCCAGGGTGGATAGCATGAA
GGAGAAAGAGGGAGGGTTGGAGGAAGGGGAAGAGGGGAGGGACGCAGATG
AGGAGGAAGGCGAGGGGAGCATGAGGAATCAGAAGGAAAGAATTGAATTG
GCGAAACCTCCCATTGCCATTGGTTGTCAGAGTACAGAGCTTAAGTAGTA
GACAAGAAATGGATAGCACGACATTTAGATTGACTAGGAAGCGCCAAATA
AAACAAATCACACAACACTAAATATACAAATACTGCCATTGTATATTTGG
TTGAACAGACAGCCGTTTCCGATTTGGTTCTCTTTCTTGTCAAACTAACT
TATTTTTGAATCAGAAGAACCACTTTTGTATCTGTCGGCCCTCGCCTACT
TGCAACCGATGCATTTCGCCCTTGGTCAAAGTCATCACATTTGTCCTCCT
GCAACCAACACGTTCCCTCCTCTCCGTCGTAGGTGTTACTTCCTGATCCT
ACTTGCTTCCTACATCCTTATCGCCCGCTTTCCCATTCTCTCGGACTTCT
CCCCTGGTGCACGTTTTTATTTTTTTCGAAAAAAAAATACATAGAACATA
GAACATTAAACATAGAAAATCAAAATCAAAATTTCAAGAGGCGTCAAATA
TGCGCGACTCGACCTACACTTGCAGTACGTACTCCGGCTCTTCTTGTGCC
ATGGCTCTTTTTGGGGACAAAACAGACAAAATTTAACATAGAAAATCAAA
ATAATGGCACGCACATCTCCCGGTGATTCCCTTGGTCTCGCACGGGCTGA
AGGACATTCATTGGTGCCACTGATGGGCAGGATTCACCAGTTAGTGTTAT
GACACATCTAGAGAGGCAAAAGATACATCAAAATTATTGCTCCATAAATG
CGGGCAAGAAATAGGACCGAGCTTCATTTGGTAG
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protein sequence of NO07G03390.1

>NO07G03390.1-protein ID=NO07G03390.1-protein|Name=NO07G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MLLSCSSSTFFKDHQAHKMLTSLSYHPKRRRLSPVHVPIPLGMAPFPSKP
HQSAMGLCPLQATELQFLSPCSPSLASPHTRQAHLTTKCVLLTVGIIASL
AWAVGLAAVLLPEWTVEDANVDSTLNAHIGLFETIYHVGEVRESSTLRFC
NGLGPIYSTEKCVMWRVAQISALVGLGMGYTGLLFLYSAVGKSWIRPRRM
PEVVAWVWTFFLLAGVCALASATAWKFLVLAFMRDHGKLGDGYSVKMGVS
MLLMAGVGVIFLTLPFWRIVTQYWLVGSGSIAGFYRGRKSSLPSSSEASA
VAETAGNSSSSSSRSNSSCGSSSGGGNKSRVQRPPHRHSFNKEGISRWRK
RAADILQLPRVDSMKEKEGGLEEGEEGRDADEEEGEGSMRNQKERIELAK
PPIAIGCQSTELK*
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mRNA from alignment at chr7:930323..932306-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03390.1 ID=NO07G03390.1|Name=NO07G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp|location=Sequence derived from alignment at chr7:930323..932306- (Nannochloropsis oceanica)
CCAGGAATGCTTCTTTCTTGCTCTTCCTCCACCTTCTTCAAAGATCATCA
AGCCCACAAAATGCTCACTTCCTTGTCATATCACCCCAAGCGCAGACGGC
TGAGTCCAGTCCACGTGCCAATCCCCCTCGGTATGGCCCCTTTTCCATCC
AAACCACACCAATCAGCGATGGGACTTTGCCCCCTGCAAGCTACGGAACT
CCAGTTCCTATCGCCCTGTTCCCCCTCTCTGGCATCGCCCCACACCCGTC
AGGCCCATCTCACTACGAAATGTGTCCTCTTGACCGTAGGCATCATTGCC
AGCTTGGCCTGGGCCGTGGGGTTGGCCGCCGTCTTGCTTCCAGAGTGGAC
TGTCGAGGACGCCAATGTCGACAGCACTCTCAATGCCCACATCGGGCTCT
TCGAGACCATCTACCACGTCGGAGAAGTCCGGGAGTCCTCCACCCTTCGA
TTCTGCAATGGTTTGGGTCCAATTTATTCGACGGAAAAATGCGTCATGTG
GCGCGTGGCACAAATTAGCGCGTTGGTTGGACTAGGCATGGGATACACGG
GCCTTCTCTTCTTATACAGTGCGGTGGGGAAGAGTTGGATCCGTCCTCGG
AGAATGCCAGAGGTGGTCGCGTGGGTGTGGACATTCTTTCTACTGGCAGG
TGTGTGTGCATTAGCAAGCGCGACTGCGTGGAAGTTTTTGGTGTTGGCTT
TCATGCGGGACCATGGCAAGTTGGGTGATGGGTACTCGGTAAAAATGGGC
GTATCGATGCTGCTTATGGCGGGGGTAGGTGTGATCTTTCTGACTTTGCC
ATTCTGGAGAATAGTGACGCAGTATTGGTTGGTGGGTAGTGGTAGTATAG
CTGGATTTTATAGGGGGAGGAAGAGTTCGTTGCCGTCGTCGTCAGAGGCA
TCAGCTGTAGCAGAGACAGCGGGGAACAGCAGCAGCAGTAGCAGCCGCAG
CAACAGCAGCTGCGGCAGTAGCAGCGGCGGTGGCAACAAGTCTCGTGTTC
AGAGACCACCTCATCGTCATAGCTTCAACAAGGAGGGGATCTCACGCTGG
CGAAAACGGGCGGCGGACATCCTGCAATTGCCCAGGGTGGATAGCATGAA
GGAGAAAGAGGGAGGGTTGGAGGAAGGGGAAGAGGGGAGGGACGCAGATG
AGGAGGAAGGCGAGGGGAGCATGAGGAATCAGAAGGAAAGAATTGAATTG
GCGAAACCTCCCATTGCCATTGGTTGTCAGAGTACAGAGCTTAAGTAGTA
GACAAGAAATGGATAGCACGACATTTAGATTGACTAGGAAGCGCCAAATA
AAACAAATCACACAACACTAAATATACAAATACTGCCATTGTATATTTGG
TTGAACAGACAGCCGTTTCCGATTTGGTTCTCTTTCTTGTCAAACTAACT
TATTTTTGAATCAGAAGAACCACTTTTGTATCTGTCGGCCCTCGCCTACT
TGCAACCGATGCATTTCGCCCTTGGTCAAAGTCATCACATTTGTCCTCCT
GCAACCAACACGTTCCCTCCTCTCCGTCGTAGGTGTTACTTCCTGATCCT
ACTTGCTTCCTACATCCTTATCGCCCGCTTTCCCATTCTCTCGGACTTCT
CCCCTGGTGCACGTTTTTATTTTTTTCGAAAAAAAAATACATAGAACATA
GAACATTAAACATAGAAAATCAAAATCAAAATTTCAAGAGGCGTCAAATA
TGCGCGACTCGACCTACACTTGCAGTACGTACTCCGGCTCTTCTTGTGCC
ATGGCTCTTTTTGGGGACAAAACAGACAAAATTTAACATAGAAAATCAAA
ATAATGGCACGCACATCTCCCGGTGATTCCCTTGGTCTCGCACGGGCTGA
AGGACATTCATTGGTGCCACTGATGGGCAGGATTCACCAGTTAGTGTTAT
GACACATCTAGAGAGGCAAAAGATACATCAAAATTATTGCTCCATAAATG
CGGGCAAGAAATAGGACCGAGCTTCATTTGGTAG
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Coding sequence (CDS) from alignment at chr7:930323..932306-

>NO07G03390.1 ID=NO07G03390.1|Name=NO07G03390.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr7:930323..932306- (Nannochloropsis oceanica)
ATGCTTCTTTCTTGCTCTTCCTCCACCTTCTTCAAAGATCATCAAGCCCA
CAAAATGCTCACTTCCTTGTCATATCACCCCAAGCGCAGACGGCTGAGTC
CAGTCCACGTGCCAATCCCCCTCGGTATGGCCCCTTTTCCATCCAAACCA
CACCAATCAGCGATGGGACTTTGCCCCCTGCAAGCTACGGAACTCCAGTT
CCTATCGCCCTGTTCCCCCTCTCTGGCATCGCCCCACACCCGTCAGGCCC
ATCTCACTACGAAATGTGTCCTCTTGACCGTAGGCATCATTGCCAGCTTG
GCCTGGGCCGTGGGGTTGGCCGCCGTCTTGCTTCCAGAGTGGACTGTCGA
GGACGCCAATGTCGACAGCACTCTCAATGCCCACATCGGGCTCTTCGAGA
CCATCTACCACGTCGGAGAAGTCCGGGAGTCCTCCACCCTTCGATTCTGC
AATGGTTTGGGTCCAATTTATTCGACGGAAAAATGCGTCATGTGGCGCGT
GGCACAAATTAGCGCGTTGGTTGGACTAGGCATGGGATACACGGGCCTTC
TCTTCTTATACAGTGCGGTGGGGAAGAGTTGGATCCGTCCTCGGAGAATG
CCAGAGGTGGTCGCGTGGGTGTGGACATTCTTTCTACTGGCAGGTGTGTG
TGCATTAGCAAGCGCGACTGCGTGGAAGTTTTTGGTGTTGGCTTTCATGC
GGGACCATGGCAAGTTGGGTGATGGGTACTCGGTAAAAATGGGCGTATCG
ATGCTGCTTATGGCGGGGGTAGGTGTGATCTTTCTGACTTTGCCATTCTG
GAGAATAGTGACGCAGTATTGGTTGGTGGGTAGTGGTAGTATAGCTGGAT
TTTATAGGGGGAGGAAGAGTTCGTTGCCGTCGTCGTCAGAGGCATCAGCT
GTAGCAGAGACAGCGGGGAACAGCAGCAGCAGTAGCAGCCGCAGCAACAG
CAGCTGCGGCAGTAGCAGCGGCGGTGGCAACAAGTCTCGTGTTCAGAGAC
CACCTCATCGTCATAGCTTCAACAAGGAGGGGATCTCACGCTGGCGAAAA
CGGGCGGCGGACATCCTGCAATTGCCCAGGGTGGATAGCATGAAGGAGAA
AGAGGGAGGGTTGGAGGAAGGGGAAGAGGGGAGGGACGCAGATGAGGAGG
AAGGCGAGGGGAGCATGAGGAATCAGAAGGAAAGAATTGAATTGGCGAAA
CCTCCCATTGCCATTGGTTGTCAGAGTACAGAGCTTAAGTAG
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Synonyms
Publications