NO07G03380.1, NO07G03380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03380.1
Unique NameNO07G03380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1005
Alignment locationchr7:928397..929582 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:928397..929582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03380.1 vs.
Match: EWM27040.1 (uracil-dna glycosylase [Nannochloropsis gaditana])

HSP 1 Score: 429.1 bits (1102), Expect = 1.300e-116
Identity = 231/338 (68.34%), Postives = 253/338 (74.85%), Query Frame = 0 
Query:    1 MTQPKLSAFFTSSSSTKSTPDPA--ALSGAGAPKRALDS--SGGGVEGDCGTPAVQAPAAKKVAVEKSTMSTASSFSSFSRSPFSSASSSSASASTPSFLSSSLVPHPVLQSLPIMDDGWRQLVTNEANKPYFKRLLAFLTQEATSKQVVYPPYPLVFTALTLCRWTDVRVVIIGQDPYHGPNQAHGLAFSVVGPTPPPPSLNNMFKEAVMDVVGFIKPSHGNLEAWSRQGVLLLNTVLTVRRGQAHSHKGKGWESFTDAVIKELDAKKTGLVFLLWGKPAQEKCKNINRKKHRVIQCAHPSPLSATKTSTPFIGSKSFSRANLLLKELGKAPIDWRL 335
            MTQ KLSAFF SSS  K+ P       S +   KR LD      G        AV  P  KK A  K    TA+S +      F++   SS + S    L  +L  HPVLQSL  MDDGWR  V ++A KPYF RLLAFL+QE +S+QVVYPPYPLVF+ALTLCRW DVRVVIIGQDPYHGPNQAHGLAFSV+ PT PPPSLNNMFKEA+ DV GF KPSHGNLEAWSRQGVLLLNTVLTVRRGQA+SHKGKGWE+FTDAVIKELD KK GLVF+LWGKPAQEKCK+INR KHRVI+CAHPSPLSATKT+ PFIGSKSFSR N  L ELGK PIDWRL
Sbjct:    1 MTQSKLSAFFRSSSHKKTAPKTGEDCSSESRLEKRVLDDIDDNSGTLEKHDVVAVVQPPEKKTACGKKIEVTAASLA------FAAPLKSSPTPSPSPCLPPALTAHPVLQSLDAMDDGWRHFVVSQAGKPYFSRLLAFLSQEISSRQVVYPPYPLVFSALTLCRWLDVRVVIIGQDPYHGPNQAHGLAFSVLPPTQPPPSLNNMFKEAMEDVSGFTKPSHGNLEAWSRQGVLLLNTVLTVRRGQANSHKGKGWETFTDAVIKELDVKKKGLVFVLWGKPAQEKCKSINRAKHRVIRCAHPSPLSATKTNAPFIGSKSFSRTNAALVELGKEPIDWRL 332
The following BLAST results are available for this feature:
BLAST of NO07G03380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27040.11.300e-11668.34uracil-dna glycosylase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03380NO07G03380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03380.1NO07G03380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03380.1.cds1NO07G03380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03380.1.cds2NO07G03380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03380.1 ID=NO07G03380.1|Name=NO07G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1005bp
ATGACGCAGCCCAAGCTCTCTGCGTTCTTTACCTCGTCGTCAAGCACTAA
AAGCACGCCGGATCCCGCAGCACTATCTGGGGCTGGAGCACCGAAGCGTG
CCCTTGACAGCAGCGGAGGCGGGGTCGAAGGCGACTGTGGGACACCGGCT
GTGCAGGCGCCAGCAGCCAAAAAGGTGGCGGTCGAAAAGAGTACCATGAG
CACTGCCTCTTCATTTTCCTCCTTTTCTCGATCCCCCTTTTCCTCGGCGT
CTTCCTCGTCCGCCTCCGCCTCCACCCCCTCCTTCCTCTCCTCTAGCCTC
GTACCCCACCCTGTTCTCCAGTCCCTCCCCATCATGGACGACGGCTGGCG
GCAATTGGTGACAAACGAAGCCAACAAACCCTACTTCAAACGTCTACTTG
CCTTTCTTACTCAAGAAGCCACGAGCAAGCAAGTCGTCTACCCGCCCTAC
CCATTGGTATTTACCGCCCTCACCCTCTGTAGGTGGACAGACGTCCGCGT
CGTTATCATCGGCCAAGACCCTTACCATGGGCCCAATCAAGCCCATGGAC
TCGCCTTCTCCGTTGTAGGCCCCACCCCTCCCCCTCCCAGTCTTAACAAT
ATGTTTAAAGAAGCAGTTATGGACGTGGTTGGATTCATTAAGCCCTCTCA
TGGCAACTTGGAGGCGTGGAGCCGCCAGGGTGTTTTACTGCTGAACACTG
TTTTGACTGTACGAAGGGGACAGGCACATTCGCATAAAGGCAAGGGATGG
GAGAGCTTCACGGACGCGGTGATCAAGGAACTGGATGCGAAGAAGACAGG
TTTGGTGTTCTTGTTGTGGGGTAAGCCAGCGCAGGAGAAATGCAAAAACA
TCAACCGGAAGAAGCATCGCGTTATCCAGTGCGCCCATCCATCTCCTCTC
TCGGCCACCAAGACTAGCACGCCTTTTATTGGTTCCAAAAGTTTTTCGCG
AGCAAATTTGCTGTTGAAAGAGCTGGGGAAGGCGCCGATTGACTGGCGAT
TGTAG
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protein sequence of NO07G03380.1

>NO07G03380.1-protein ID=NO07G03380.1-protein|Name=NO07G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MTQPKLSAFFTSSSSTKSTPDPAALSGAGAPKRALDSSGGGVEGDCGTPA
VQAPAAKKVAVEKSTMSTASSFSSFSRSPFSSASSSSASASTPSFLSSSL
VPHPVLQSLPIMDDGWRQLVTNEANKPYFKRLLAFLTQEATSKQVVYPPY
PLVFTALTLCRWTDVRVVIIGQDPYHGPNQAHGLAFSVVGPTPPPPSLNN
MFKEAVMDVVGFIKPSHGNLEAWSRQGVLLLNTVLTVRRGQAHSHKGKGW
ESFTDAVIKELDAKKTGLVFLLWGKPAQEKCKNINRKKHRVIQCAHPSPL
SATKTSTPFIGSKSFSRANLLLKELGKAPIDWRL*
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mRNA from alignment at chr7:928397..929582+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03380.1 ID=NO07G03380.1|Name=NO07G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1186bp|location=Sequence derived from alignment at chr7:928397..929582+ (Nannochloropsis oceanica)
ATGACGCAGCCCAAGCTCTCTGCGTTCTTTACCTCGTCGTCAAGCACTAA
AAGCACGCCGGATCCCGCAGCACTATCTGGGGCTGGAGCACCGAAGCGTG
CCCTTGACAGCAGCGGAGGCGGGGTCGAAGGCGACTGTGGGACACCGGCT
GTGCAGGCGCCAGCAGCCAAAAAGGTGGCGGTCGAAAAGAGTACCATGAG
CACTGCCTCTTCATTTTCCTCCTTTTCTCGATCCCCCTTTTCCTCGGCGT
CTTCCTCGTCCGCCTCCGCCTCCACCCCCTCCTTCCTCTCCTCTAGCCTC
GTACCCCACCCTGTTCTCCAGTCCCTCCCCATCATGGACGACGGCTGGCG
GCAATTGGTGACAAACGAAGCCAACAAACCCTACTTCAAACGTCTACTTG
CCTTTCTTACTCAAGAAGCCACGAGCAAGCAAGTCGTCTACCCGCCCTAC
CCATTGGTATTTACCGCCCTCACCCTCTGTAGGTGGACAGACGTCCGCGT
CGTTATCATCGGCCAAGACCCTTACCATGGGCCCAATCAAGCCCATGGAC
TCGCCTTCTCCGTTGTAGGCCCCACCCCTCCCCCTCCCAGTCTTAACAAT
ATGTTTAAAGAAGCAGTTATGGACGTGGTTGGATTCATTAAGCCCTCTCA
TGGCAACTTGGAGGCGTGGAGCCGCCAGGGTGTTTTACTGCTGAACACTG
TTTTGACTGTACGAAGGGGACAGGCACATTCGCATAAAGGCAAGGGATGG
GAGAGCTTCACGGACGCGGTGATCAAGGAACTGGATGCGAAGAAGACAGG
TTTGGTGTTCTTGTTGTGGGGTAAGCCAGCGCAGGTATGTTTTGGGGTGT
AAGGGCTAGAGCTTGGGTATTGTAGGAGGATTTAATGTGCTGTACGCTTC
CAAGGCTGTTGGGTTTGAAACGACGATGGTTTGTGTTTTCTTCATTTTCT
GGGGTGTATCGCCATGATTCAAATCTTTTCATTTTCTCTCTTTCTCCCCT
CCCTCCCTTCTGCAGGAGAAATGCAAAAACATCAACCGGAAGAAGCATCG
CGTTATCCAGTGCGCCCATCCATCTCCTCTCTCGGCCACCAAGACTAGCA
CGCCTTTTATTGGTTCCAAAAGTTTTTCGCGAGCAAATTTGCTGTTGAAA
GAGCTGGGGAAGGCGCCGATTGACTGGCGATTGTAG
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Coding sequence (CDS) from alignment at chr7:928397..929582+

>NO07G03380.1 ID=NO07G03380.1|Name=NO07G03380.1|organism=Nannochloropsis oceanica|type=CDS|length=1005bp|location=Sequence derived from alignment at chr7:928397..929582+ (Nannochloropsis oceanica)
ATGACGCAGCCCAAGCTCTCTGCGTTCTTTACCTCGTCGTCAAGCACTAA
AAGCACGCCGGATCCCGCAGCACTATCTGGGGCTGGAGCACCGAAGCGTG
CCCTTGACAGCAGCGGAGGCGGGGTCGAAGGCGACTGTGGGACACCGGCT
GTGCAGGCGCCAGCAGCCAAAAAGGTGGCGGTCGAAAAGAGTACCATGAG
CACTGCCTCTTCATTTTCCTCCTTTTCTCGATCCCCCTTTTCCTCGGCGT
CTTCCTCGTCCGCCTCCGCCTCCACCCCCTCCTTCCTCTCCTCTAGCCTC
GTACCCCACCCTGTTCTCCAGTCCCTCCCCATCATGGACGACGGCTGGCG
GCAATTGGTGACAAACGAAGCCAACAAACCCTACTTCAAACGTCTACTTG
CCTTTCTTACTCAAGAAGCCACGAGCAAGCAAGTCGTCTACCCGCCCTAC
CCATTGGTATTTACCGCCCTCACCCTCTGTAGGTGGACAGACGTCCGCGT
CGTTATCATCGGCCAAGACCCTTACCATGGGCCCAATCAAGCCCATGGAC
TCGCCTTCTCCGTTGTAGGCCCCACCCCTCCCCCTCCCAGTCTTAACAAT
ATGTTTAAAGAAGCAGTTATGGACGTGGTTGGATTCATTAAGCCCTCTCA
TGGCAACTTGGAGGCGTGGAGCCGCCAGGGTGTTTTACTGCTGAACACTG
TTTTGACTGTACGAAGGGGACAGGCACATTCGCATAAAGGCAAGGGATGG
GAGAGCTTCACGGACGCGGTGATCAAGGAACTGGATGCGAAGAAGACAGG
TTTGGTGTTCTTGTTGTGGGGTAAGCCAGCGCAGGAGAAATGCAAAAACA
TCAACCGGAAGAAGCATCGCGTTATCCAGTGCGCCCATCCATCTCCTCTC
TCGGCCACCAAGACTAGCACGCCTTTTATTGGTTCCAAAAGTTTTTCGCG
AGCAAATTTGCTGTTGAAAGAGCTGGGGAAGGCGCCGATTGACTGGCGAT
TGTAG
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Synonyms
Publications