NO07G03370.1, NO07G03370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03370.1
Unique NameNO07G03370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1194
Alignment locationchr7:926084..927517 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:926084..927517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03370.1 vs.
Match: EWM27057.1 (hypothetical protein Naga_100056g7 [Nannochloropsis gaditana])

HSP 1 Score: 439.9 bits (1130), Expect = 8.500e-120
Identity = 220/312 (70.51%), Postives = 257/312 (82.37%), Query Frame = 0 
Query:   90 GLFQRRSHLGTTSLAASAMAALFLFSPSAAYAARIKGAAELDAEAYLVDLLKGNPLTGGAEQSPLPIRPARVLDKDFATFLDMTTLGLISKISGQSLEKVNKEVSAFRQTVEPGFQRRAPFPSDDLTNERCFDCYSYADFRVAAKLIPDLRARAVFVRDLGEAVLNGVIKGSPGI------KSNDAQKDGLDGTIEGMKQILAYMQSKGFLKDSKINIEDYDRASWDDGYNLELLVTVVEPATLGGNIQFTGEGFLFHPDYVAETLLAYLERCGVKEAKSLQYLLDTEYRPNPKDYNPTEVLYQISVEKGRQ 396
            GL  RR+ + + + A    AALFL  PSAA A RIKGAAE+DAEAY  DLLKGNPLTGG EQS + IRPARVLDK+FATFLD TTL L+S+ SG S+E V +EV+AFRQ VEPGFQRRAPFP+ DL+NERCFDCYSYADFRVAAKLIP+LRARA FVR LGE VL  + +G   I      ++ DAQKDGL+  + G+ +ILAYM+ KGFLKD ++N +DYDRASWD+G++LE+LVTV+EPATLGGN+QFTGEGFLFHPDYVAETLLAYL  CGV+ AK+LQYLLDTEYRPNPKDYNPTEVLYQIS+ KG +
Sbjct:   55 GLSSRRTVIDSGATAGKLAAALFLTHPSAAQA-RIKGAAEIDAEAYFQDLLKGNPLTGGIEQSAIEIRPARVLDKEFATFLDKTTLKLLSETSGVSMEGVEREVAAFRQAVEPGFQRRAPFPTGDLSNERCFDCYSYADFRVAAKLIPNLRARATFVRQLGETVLGKIFEGQRAIDAKAVPRTYDAQKDGLEEALTGLSRILAYMKLKGFLKDFRVNADDYDRASWDEGFSLEVLVTVIEPATLGGNVQFTGEGFLFHPDYVAETLLAYLALCGVRNAKALQYLLDTEYRPNPKDYNPTEVLYQISLGKGSE 365
The following BLAST results are available for this feature:
BLAST of NO07G03370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27057.18.500e-12070.51hypothetical protein Naga_100056g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03370NO07G03370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03370.1NO07G03370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03370.1.cds1NO07G03370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03370.1.cds2NO07G03370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03370.1 ID=NO07G03370.1|Name=NO07G03370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp
ATGGCACCTTCATCATGTCGATGGCATCGACTCCTTTTGCTTGCGGTTGC
GGTCACTAGTACTCTGTTTTCCTCTACCCTAGTTCCAACCCAGGCTTTCA
CACTGCTACGTCATCGGAGCTCGATGACGGTCAGCAAGTGGGAGGATTCC
GCTACCCCACTACGCTCACGGACCCCACCTACTCTTAAGAGGATCACCAT
TATGTCAAGTTTTAGTGGCTACAGTGATTCCGCCAACATGCCGCATCCGC
GAGCTGCTCCGACTCGAGGTCTTTTCCAACGACGCAGCCACCTGGGCACC
ACGTCCCTCGCTGCATCCGCGATGGCGGCCCTATTCCTTTTTTCCCCTTC
CGCCGCATACGCTGCTCGCATCAAGGGTGCGGCCGAGCTCGATGCCGAGG
CATATCTCGTCGATTTGTTGAAAGGAAATCCTCTCACTGGTGGAGCGGAG
CAGTCCCCCCTCCCTATCCGCCCTGCCCGAGTGCTAGACAAAGACTTTGC
CACCTTTCTGGACATGACTACCCTCGGATTGATAAGCAAGATCTCGGGGC
AATCTTTAGAAAAGGTGAACAAGGAAGTGAGTGCATTCCGACAGACTGTC
GAACCGGGTTTCCAACGACGGGCACCTTTCCCCTCAGACGACTTAACGAA
TGAACGGTGCTTCGATTGCTATTCTTACGCCGATTTCCGCGTGGCCGCCA
AGCTTATTCCTGATCTCCGGGCCCGAGCGGTTTTTGTCCGAGACCTAGGC
GAAGCAGTTTTGAATGGAGTCATAAAGGGATCACCAGGTATCAAGAGCAA
CGACGCTCAAAAAGATGGATTGGACGGAACTATAGAAGGAATGAAGCAAA
TTTTGGCCTACATGCAGAGCAAAGGCTTTCTCAAGGATTCTAAAATAAAT
ATCGAGGATTACGACAGGGCTTCTTGGGACGACGGGTATAATCTAGAGCT
GCTAGTGACGGTGGTGGAGCCAGCGACGTTGGGCGGTAATATTCAATTTA
CAGGGGAAGGGTTTTTGTTTCACCCGGACTATGTCGCCGAGACGCTGTTG
GCATACTTGGAGCGCTGTGGCGTGAAGGAAGCTAAGTCATTGCAGTATCT
GCTTGACACGGAGTATCGGCCCAACCCTAAGGACTACAACCCTACTGAGG
TACTCTACCAGATAAGCGTGGAAAAGGGACGGCAGCCCCTATAA
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protein sequence of NO07G03370.1

>NO07G03370.1-protein ID=NO07G03370.1-protein|Name=NO07G03370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MAPSSCRWHRLLLLAVAVTSTLFSSTLVPTQAFTLLRHRSSMTVSKWEDS
ATPLRSRTPPTLKRITIMSSFSGYSDSANMPHPRAAPTRGLFQRRSHLGT
TSLAASAMAALFLFSPSAAYAARIKGAAELDAEAYLVDLLKGNPLTGGAE
QSPLPIRPARVLDKDFATFLDMTTLGLISKISGQSLEKVNKEVSAFRQTV
EPGFQRRAPFPSDDLTNERCFDCYSYADFRVAAKLIPDLRARAVFVRDLG
EAVLNGVIKGSPGIKSNDAQKDGLDGTIEGMKQILAYMQSKGFLKDSKIN
IEDYDRASWDDGYNLELLVTVVEPATLGGNIQFTGEGFLFHPDYVAETLL
AYLERCGVKEAKSLQYLLDTEYRPNPKDYNPTEVLYQISVEKGRQPL*
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mRNA from alignment at chr7:926084..927517+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03370.1 ID=NO07G03370.1|Name=NO07G03370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp|location=Sequence derived from alignment at chr7:926084..927517+ (Nannochloropsis oceanica)
ATGGCACCTTCATCATGTCGATGGCATCGACTCCTTTTGCTTGCGGTTGC
GGTCACTAGTACTCTGTTTTCCTCTACCCTAGTTCCAACCCAGGCTTTCA
CACTGCTACGTCATCGGAGCTCGATGACGGTCAGCAAGTGGGAGGATTCC
GCTACCCCACTACGCTCACGGACCCCACCTACTCTTAAGAGGATCACCAT
TATGTCAAGTTTTAGTGGCTACAGTGATTCCGCCAACATGCCGCATCCGC
GAGCTGCTCCGACTCGAGGTCTTTTCCAACGACGCAGCCACCTGGGCACC
ACGTCCCTCGCTGCATCCGCGATGGCGGCCCTATTCCTTTTTTCCCCTTC
CGCCGCATACGCTGCTCGCATCAAGGGTGCGGCCGAGCTCGATGCCGAGG
CATATCTCGTCGATTTGTTGAAAGGAAATCCTCTCACTGGTGGAGCGGAG
CAGTCCCCCCTCCCTATCCGCCCTGCCCGAGTGCTAGACAAAGACTTTGC
CACCTTTCTGGACATGACTACCCTCGGATTGATAAGCAAGATCTCGGGGC
AATCTTTAGAAAAGGTGAACAAGGAAGTGAGTGCATTCCGACAGACTGTC
GAACCGGGTTTCCAACGACGGGCACCTTTCCCCTCAGACGACTTAACGAA
TGAACGGTGCTTCGATTGCTATTCTTACGCCGATTTCCGCGTGGCCGCCA
AGCTTATTCCTGATCTCCGGGCCCGAGCGGTTTTTGTCCGAGACCTAGGC
GAAGCAGTTTTGAATGGAGTCATAAAGGGATCACCAGGTATCAAGAGCAA
CGACGCTCAAAAAGATGGATTGGACGGAACTATAGAAGGAATGAAGCAAA
TTTTGGCCTACATGCAGAGCAAAGGCTTTCTCAAGGATTCTAAAATAAAT
ATCGAGGATTACGACAGGGCTTCTTGGGACGACGGGTATAATCTAGAGCT
GCTAGTGACGGTGGTGGAGCCAGCGACGTTGGGCGGTAATATTCAATTTA
CAGGGGAAGGGTTTTTGTTTCACCCGGACTATGTCGCCGAGACGCTGTTG
GCATACTTGGAGCGCTGTGGCGTGAAGGAAGCTAAGTCATTGCAGGTATG
GAAGGCAAAAAGGATTGGGGCGGGGGGGGGGAGAGGAGAAGATTGGAATT
TGTGGAAAGTGGGGAATTGATTGTTGGCAGCATTGGACTGGAGAGATGCA
TGACCCTTCCTCATGACCTCCCTCAACGGCTTTCCCCATCGATTGAGGTG
GACGAACTAAATAGGGTTAGACCTCTTAGTTACTTTATAAGACTCATTCA
AATCCCACTTAACACTCTCACTCTTTCACGAAAAGTATCTGCTTGACACG
GAGTATCGGCCCAACCCTAAGGACTACAACCCTACTGAGGTACTCTACCA
GATAAGCGTGGAAAAGGGACGGCAGCCCCTATAA
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Coding sequence (CDS) from alignment at chr7:926084..927517+

>NO07G03370.1 ID=NO07G03370.1|Name=NO07G03370.1|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr7:926084..927517+ (Nannochloropsis oceanica)
ATGGCACCTTCATCATGTCGATGGCATCGACTCCTTTTGCTTGCGGTTGC
GGTCACTAGTACTCTGTTTTCCTCTACCCTAGTTCCAACCCAGGCTTTCA
CACTGCTACGTCATCGGAGCTCGATGACGGTCAGCAAGTGGGAGGATTCC
GCTACCCCACTACGCTCACGGACCCCACCTACTCTTAAGAGGATCACCAT
TATGTCAAGTTTTAGTGGCTACAGTGATTCCGCCAACATGCCGCATCCGC
GAGCTGCTCCGACTCGAGGTCTTTTCCAACGACGCAGCCACCTGGGCACC
ACGTCCCTCGCTGCATCCGCGATGGCGGCCCTATTCCTTTTTTCCCCTTC
CGCCGCATACGCTGCTCGCATCAAGGGTGCGGCCGAGCTCGATGCCGAGG
CATATCTCGTCGATTTGTTGAAAGGAAATCCTCTCACTGGTGGAGCGGAG
CAGTCCCCCCTCCCTATCCGCCCTGCCCGAGTGCTAGACAAAGACTTTGC
CACCTTTCTGGACATGACTACCCTCGGATTGATAAGCAAGATCTCGGGGC
AATCTTTAGAAAAGGTGAACAAGGAAGTGAGTGCATTCCGACAGACTGTC
GAACCGGGTTTCCAACGACGGGCACCTTTCCCCTCAGACGACTTAACGAA
TGAACGGTGCTTCGATTGCTATTCTTACGCCGATTTCCGCGTGGCCGCCA
AGCTTATTCCTGATCTCCGGGCCCGAGCGGTTTTTGTCCGAGACCTAGGC
GAAGCAGTTTTGAATGGAGTCATAAAGGGATCACCAGGTATCAAGAGCAA
CGACGCTCAAAAAGATGGATTGGACGGAACTATAGAAGGAATGAAGCAAA
TTTTGGCCTACATGCAGAGCAAAGGCTTTCTCAAGGATTCTAAAATAAAT
ATCGAGGATTACGACAGGGCTTCTTGGGACGACGGGTATAATCTAGAGCT
GCTAGTGACGGTGGTGGAGCCAGCGACGTTGGGCGGTAATATTCAATTTA
CAGGGGAAGGGTTTTTGTTTCACCCGGACTATGTCGCCGAGACGCTGTTG
GCATACTTGGAGCGCTGTGGCGTGAAGGAAGCTAAGTCATTGCAGTATCT
GCTTGACACGGAGTATCGGCCCAACCCTAAGGACTACAACCCTACTGAGG
TACTCTACCAGATAAGCGTGGAAAAGGGACGGCAGCCCCTATAA
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Synonyms
Publications