NO07G03350.1, NO07G03350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03350.1
Unique NameNO07G03350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1760
Alignment locationchr7:922651..924410 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:922651..924410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G03350.1 vs.
Match: XP_005854078.1 (hypothetical protein NGA_0219602 [Nannochloropsis gaditana CCMP526]; XP_005854487.1 hypothetical protein NGA_0219601 [Nannochloropsis gaditana CCMP526]; EKU21875.1 hypothetical protein NGA_0219601 [Nannochloropsis gaditana CCMP526]; EKU22282.1 hypothetical protein NGA_0219602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 81.6 bits (200), Expect = 4.000e-12
Identity = 80/168 (47.62%), Postives = 96/168 (57.14%), Query Frame = 0
Query:    1 MTSLASSHTS-----DKDDESQ----------GSFSGSDDGSRNDLMPMSGGKGAGGGGGGGRGGRAGSAKKGGGGGDDKRKKKLELNRIASRESRKRKKRRLEELQRSVLYLTHENHQLREQNELLRQMLVGRMP----------GGAGPGGGSAPAGGPQQLPQQQ 144
            M+ LAS+ +S     D DDE +           SF  S  G+ N     +  K +      G   R  S     G  DDKR+KKLELNR+ASRESRKRKKRRLEELQRSVLYLTHENHQLREQNELLRQML+GR+P          GG G   G     GP ++ +++
Sbjct:   29 MSELASAVSSVRGNEDDDDEREENGTYVNSYGSSFPASASGTSNLTATSAASKSSTTVASSG-ATRKRSTANAHGSSDDKRQKKLELNRLASRESRKRKKRRLEELQRSVLYLTHENHQLREQNELLRQMLIGRLPTGTVAAALGNGGEGNEKGLLAMRGPGEMEKEE 195          
The following BLAST results are available for this feature:
BLAST of NO07G03350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854078.14.000e-1247.62hypothetical protein NGA_0219602 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03350NO07G03350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03350.1NO07G03350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03350.1.cds1NO07G03350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03350.1 ID=NO07G03350.1|Name=NO07G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1760bp
GGGAGAGGCAGCGAGGCGCCTTCCACACCACTTTCCCCAACAGCCAGATC
GCGAGTCTCTCAAATGCTCTACAACCACAATACCGTACCACTCCCTGACC
ACCCACGCCACCCTGTACCTTGAGATTTAGCATACTACGATCATGAGGTA
ACACGCGGGGCCGGTATCTGCGTTGTTTTGTGCGTGCTGTCGCACTTTTC
TAGCTGGCGTCATGCCTCAAGCTATGGCATTCCGAAAGCATAGATTTGAC
GTTGCCTGCCCTGCAAGTTTATCCTGGCACCCTTCTCAACGACACCACCA
CACTTGACAGGGGAGAAGATTGTTCCTGGCTCAAATTTTGGGTAGCGCCT
GAGCGCGGCACGGTGGAGGACAACAGGACCAGGTATAAGTAAGCTGACGA
CAGCGGAATCGAGGAGACCGGCCGGGAACATCTAAGCAAGAAGGGCGTGT
TATCTAGCACCAAGCACTGGCACCACTAGCAGCACCAGCAGCACCAGCGA
CAGTCCTAGCTGAAGGAGTAATAGCAACAGCTCGAGGAGATGACGTCCCT
TGCTTCGTCTCACACCTCGGACAAGGACGACGAAAGCCAGGGCTCCTTTT
CCGGCTCTGATGATGGGTCACGAAATGATCTTATGCCAATGTCAGGAGGC
AAGGGGGCCGGCGGTGGTGGTGGTGGAGGGCGAGGGGGAAGGGCGGGCAG
TGCCAAAAAAGGTGGTGGTGGTGGGGATGATAAACGGAAGAAGAAGTTGG
AACTCAATCGCATCGCATCGCGTGAAAGCCGTAAGAGGAAAAAGCGGCGC
TTGGAGGAATTGCAGAGATCTGTCTTGTATCTAACGCACGAGAATCATCA
GCTTCGTGAACAGAACGAACTCTTGAGACAGATGTTGGTCGGGCGTATGC
CAGGAGGAGCAGGGCCAGGAGGGGGTTCAGCTCCAGCAGGAGGACCTCAA
CAGCTACCGCAACAGCAGCCGCCTCAGCAACAGCTTCATCAGCCGTCACA
ATCGATTTCAGGACAGCTGCAGCAGCACATACCGCACCACCACCAGCAGT
TGCAGCCGCAGCAGGGAGGAGGTGGACCTGGAGGGGGGTTCATGATGCAG
GTGGCAGCAGCAGCGGCGCAGCCGCAGCATCAGCAGCACCACATGATGGG
AGGAGGGGGAGCCATGTCTCGAGCTGGAGCTGGGGCGATGGGAGCAGCGG
CGCAGCTCCAGCAACAGCAACAGCAACAGCAGTACGGGGGGGTACTTGGA
GGTGGAGAGGGAAGAGGCGGAGGTGTGAATGGGTATCGTGGTGGGAAGGA
CGAGGGATTGGACGAAGAAGAGGATGAGGACGAGGACGAGCTGGATGAGG
ATGAATCATAGATATACAGGATAAGGGGAGGGAGGAGAGGAAGGCATAAC
GCGAGACAGGGACTGACGGGTAGAGGTATAAAACTCACATGAAGCAGGAG
GTTCCACCTCCTACCATTGCTGGCTTTTCGGCTGCTGCAGTGGTGGATGG
TGATGGAGGAGTCCCCAAAACCTTAAAGCAATGCAAATCGAAATGATATC
CAAGCGAGAGAGACCAAGTGAAAAACAAGGGTCGGTAAAGAAAGAGGCTG
TATGCACGCACATACACGCGCGTGTGGTCGTGTGGGCTACCCACAAAATA
TGGGATGGAGGAGAAGAAGAGAGTGACGAAGGGGGGACAAACAGGAGGGA
ATCAATCAAATTATTTTTGGATATTTGTATAGAGGGAGGTGACAGGGAGG
GAACAAGGGA
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protein sequence of NO07G03350.1

>NO07G03350.1-protein ID=NO07G03350.1-protein|Name=NO07G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MTSLASSHTSDKDDESQGSFSGSDDGSRNDLMPMSGGKGAGGGGGGGRGG
RAGSAKKGGGGGDDKRKKKLELNRIASRESRKRKKRRLEELQRSVLYLTH
ENHQLREQNELLRQMLVGRMPGGAGPGGGSAPAGGPQQLPQQQPPQQQLH
QPSQSISGQLQQHIPHHHQQLQPQQGGGGPGGGFMMQVAAAAAQPQHQQH
HMMGGGGAMSRAGAGAMGAAAQLQQQQQQQQYGGVLGGGEGRGGGVNGYR
GGKDEGLDEEEDEDEDELDEDES*
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mRNA from alignment at chr7:922651..924410+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03350.1 ID=NO07G03350.1|Name=NO07G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1760bp|location=Sequence derived from alignment at chr7:922651..924410+ (Nannochloropsis oceanica)
GGGAGAGGCAGCGAGGCGCCTTCCACACCACTTTCCCCAACAGCCAGATC GCGAGTCTCTCAAATGCTCTACAACCACAATACCGTACCACTCCCTGACC ACCCACGCCACCCTGTACCTTGAGATTTAGCATACTACGATCATGAGGTA ACACGCGGGGCCGGTATCTGCGTTGTTTTGTGCGTGCTGTCGCACTTTTC TAGCTGGCGTCATGCCTCAAGCTATGGCATTCCGAAAGCATAGATTTGAC GTTGCCTGCCCTGCAAGTTTATCCTGGCACCCTTCTCAACGACACCACCA CACTTGACAGGGGAGAAGATTGTTCCTGGCTCAAATTTTGGGTAGCGCCT GAGCGCGGCACGGTGGAGGACAACAGGACCAGGTATAAGTAAGCTGACGA CAGCGGAATCGAGGAGACCGGCCGGGAACATCTAAGCAAGAAGGGCGTGT TATCTAGCACCAAGCACTGGCACCACTAGCAGCACCAGCAGCACCAGCGA CAGTCCTAGCTGAAGGAGTAATAGCAACAGCTCGAGGAGATGACGTCCCT TGCTTCGTCTCACACCTCGGACAAGGACGACGAAAGCCAGGGCTCCTTTT CCGGCTCTGATGATGGGTCACGAAATGATCTTATGCCAATGTCAGGAGGC AAGGGGGCCGGCGGTGGTGGTGGTGGAGGGCGAGGGGGAAGGGCGGGCAG TGCCAAAAAAGGTGGTGGTGGTGGGGATGATAAACGGAAGAAGAAGTTGG AACTCAATCGCATCGCATCGCGTGAAAGCCGTAAGAGGAAAAAGCGGCGC TTGGAGGAATTGCAGAGATCTGTCTTGTATCTAACGCACGAGAATCATCA GCTTCGTGAACAGAACGAACTCTTGAGACAGATGTTGGTCGGGCGTATGC CAGGAGGAGCAGGGCCAGGAGGGGGTTCAGCTCCAGCAGGAGGACCTCAA CAGCTACCGCAACAGCAGCCGCCTCAGCAACAGCTTCATCAGCCGTCACA ATCGATTTCAGGACAGCTGCAGCAGCACATACCGCACCACCACCAGCAGT TGCAGCCGCAGCAGGGAGGAGGTGGACCTGGAGGGGGGTTCATGATGCAG GTGGCAGCAGCAGCGGCGCAGCCGCAGCATCAGCAGCACCACATGATGGG AGGAGGGGGAGCCATGTCTCGAGCTGGAGCTGGGGCGATGGGAGCAGCGG CGCAGCTCCAGCAACAGCAACAGCAACAGCAGTACGGGGGGGTACTTGGA GGTGGAGAGGGAAGAGGCGGAGGTGTGAATGGGTATCGTGGTGGGAAGGA CGAGGGATTGGACGAAGAAGAGGATGAGGACGAGGACGAGCTGGATGAGG ATGAATCATAGATATACAGGATAAGGGGAGGGAGGAGAGGAAGGCATAAC GCGAGACAGGGACTGACGGGTAGAGGTATAAAACTCACATGAAGCAGGAG GTTCCACCTCCTACCATTGCTGGCTTTTCGGCTGCTGCAGTGGTGGATGG TGATGGAGGAGTCCCCAAAACCTTAAAGCAATGCAAATCGAAATGATATC CAAGCGAGAGAGACCAAGTGAAAAACAAGGGTCGGTAAAGAAAGAGGCTG TATGCACGCACATACACGCGCGTGTGGTCGTGTGGGCTACCCACAAAATA TGGGATGGAGGAGAAGAAGAGAGTGACGAAGGGGGGACAAACAGGAGGGA ATCAATCAAATTATTTTTGGATATTTGTATAGAGGGAGGTGACAGGGAGG GAACAAGGGA
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Coding sequence (CDS) from alignment at chr7:922651..924410+

>NO07G03350.1 ID=NO07G03350.1|Name=NO07G03350.1|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at chr7:922651..924410+ (Nannochloropsis oceanica)
ATGACGTCCCTTGCTTCGTCTCACACCTCGGACAAGGACGACGAAAGCCA
GGGCTCCTTTTCCGGCTCTGATGATGGGTCACGAAATGATCTTATGCCAA
TGTCAGGAGGCAAGGGGGCCGGCGGTGGTGGTGGTGGAGGGCGAGGGGGA
AGGGCGGGCAGTGCCAAAAAAGGTGGTGGTGGTGGGGATGATAAACGGAA
GAAGAAGTTGGAACTCAATCGCATCGCATCGCGTGAAAGCCGTAAGAGGA
AAAAGCGGCGCTTGGAGGAATTGCAGAGATCTGTCTTGTATCTAACGCAC
GAGAATCATCAGCTTCGTGAACAGAACGAACTCTTGAGACAGATGTTGGT
CGGGCGTATGCCAGGAGGAGCAGGGCCAGGAGGGGGTTCAGCTCCAGCAG
GAGGACCTCAACAGCTACCGCAACAGCAGCCGCCTCAGCAACAGCTTCAT
CAGCCGTCACAATCGATTTCAGGACAGCTGCAGCAGCACATACCGCACCA
CCACCAGCAGTTGCAGCCGCAGCAGGGAGGAGGTGGACCTGGAGGGGGGT
TCATGATGCAGGTGGCAGCAGCAGCGGCGCAGCCGCAGCATCAGCAGCAC
CACATGATGGGAGGAGGGGGAGCCATGTCTCGAGCTGGAGCTGGGGCGAT
GGGAGCAGCGGCGCAGCTCCAGCAACAGCAACAGCAACAGCAGTACGGGG
GGGTACTTGGAGGTGGAGAGGGAAGAGGCGGAGGTGTGAATGGGTATCGT
GGTGGGAAGGACGAGGGATTGGACGAAGAAGAGGATGAGGACGAGGACGA
GCTGGATGAGGATGAATCATAG
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Synonyms
Publications