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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:922651..924410 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03350.1 vs.
Match: XP_005854078.1 (hypothetical protein NGA_0219602 [Nannochloropsis gaditana CCMP526]; XP_005854487.1 hypothetical protein NGA_0219601 [Nannochloropsis gaditana CCMP526]; EKU21875.1 hypothetical protein NGA_0219601 [Nannochloropsis gaditana CCMP526]; EKU22282.1 hypothetical protein NGA_0219602 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 81.6 bits (200), Expect = 4.000e-12 Identity = 80/168 (47.62%), Postives = 96/168 (57.14%), Query Frame = 0
Query: 1 MTSLASSHTS-----DKDDESQ----------GSFSGSDDGSRNDLMPMSGGKGAGGGGGGGRGGRAGSAKKGGGGGDDKRKKKLELNRIASRESRKRKKRRLEELQRSVLYLTHENHQLREQNELLRQMLVGRMP----------GGAGPGGGSAPAGGPQQLPQQQ 144
M+ LAS+ +S D DDE + SF S G+ N + K + G R S G DDKR+KKLELNR+ASRESRKRKKRRLEELQRSVLYLTHENHQLREQNELLRQML+GR+P GG G G GP ++ +++
Sbjct: 29 MSELASAVSSVRGNEDDDDEREENGTYVNSYGSSFPASASGTSNLTATSAASKSSTTVASSG-ATRKRSTANAHGSSDDKRQKKLELNRLASRESRKRKKRRLEELQRSVLYLTHENHQLREQNELLRQMLIGRLPTGTVAAALGNGGEGNEKGLLAMRGPGEMEKEE 195
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03350.1 ID=NO07G03350.1|Name=NO07G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1760bp GGGAGAGGCAGCGAGGCGCCTTCCACACCACTTTCCCCAACAGCCAGATC GCGAGTCTCTCAAATGCTCTACAACCACAATACCGTACCACTCCCTGACC ACCCACGCCACCCTGTACCTTGAGATTTAGCATACTACGATCATGAGGTA ACACGCGGGGCCGGTATCTGCGTTGTTTTGTGCGTGCTGTCGCACTTTTC TAGCTGGCGTCATGCCTCAAGCTATGGCATTCCGAAAGCATAGATTTGAC GTTGCCTGCCCTGCAAGTTTATCCTGGCACCCTTCTCAACGACACCACCA CACTTGACAGGGGAGAAGATTGTTCCTGGCTCAAATTTTGGGTAGCGCCT GAGCGCGGCACGGTGGAGGACAACAGGACCAGGTATAAGTAAGCTGACGA CAGCGGAATCGAGGAGACCGGCCGGGAACATCTAAGCAAGAAGGGCGTGT TATCTAGCACCAAGCACTGGCACCACTAGCAGCACCAGCAGCACCAGCGA CAGTCCTAGCTGAAGGAGTAATAGCAACAGCTCGAGGAGATGACGTCCCT TGCTTCGTCTCACACCTCGGACAAGGACGACGAAAGCCAGGGCTCCTTTT CCGGCTCTGATGATGGGTCACGAAATGATCTTATGCCAATGTCAGGAGGC AAGGGGGCCGGCGGTGGTGGTGGTGGAGGGCGAGGGGGAAGGGCGGGCAG TGCCAAAAAAGGTGGTGGTGGTGGGGATGATAAACGGAAGAAGAAGTTGG AACTCAATCGCATCGCATCGCGTGAAAGCCGTAAGAGGAAAAAGCGGCGC TTGGAGGAATTGCAGAGATCTGTCTTGTATCTAACGCACGAGAATCATCA GCTTCGTGAACAGAACGAACTCTTGAGACAGATGTTGGTCGGGCGTATGC CAGGAGGAGCAGGGCCAGGAGGGGGTTCAGCTCCAGCAGGAGGACCTCAA CAGCTACCGCAACAGCAGCCGCCTCAGCAACAGCTTCATCAGCCGTCACA ATCGATTTCAGGACAGCTGCAGCAGCACATACCGCACCACCACCAGCAGT TGCAGCCGCAGCAGGGAGGAGGTGGACCTGGAGGGGGGTTCATGATGCAG GTGGCAGCAGCAGCGGCGCAGCCGCAGCATCAGCAGCACCACATGATGGG AGGAGGGGGAGCCATGTCTCGAGCTGGAGCTGGGGCGATGGGAGCAGCGG CGCAGCTCCAGCAACAGCAACAGCAACAGCAGTACGGGGGGGTACTTGGA GGTGGAGAGGGAAGAGGCGGAGGTGTGAATGGGTATCGTGGTGGGAAGGA CGAGGGATTGGACGAAGAAGAGGATGAGGACGAGGACGAGCTGGATGAGG ATGAATCATAGATATACAGGATAAGGGGAGGGAGGAGAGGAAGGCATAAC GCGAGACAGGGACTGACGGGTAGAGGTATAAAACTCACATGAAGCAGGAG GTTCCACCTCCTACCATTGCTGGCTTTTCGGCTGCTGCAGTGGTGGATGG TGATGGAGGAGTCCCCAAAACCTTAAAGCAATGCAAATCGAAATGATATC CAAGCGAGAGAGACCAAGTGAAAAACAAGGGTCGGTAAAGAAAGAGGCTG TATGCACGCACATACACGCGCGTGTGGTCGTGTGGGCTACCCACAAAATA TGGGATGGAGGAGAAGAAGAGAGTGACGAAGGGGGGACAAACAGGAGGGA ATCAATCAAATTATTTTTGGATATTTGTATAGAGGGAGGTGACAGGGAGG GAACAAGGGA back to topprotein sequence of NO07G03350.1 >NO07G03350.1-protein ID=NO07G03350.1-protein|Name=NO07G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp MTSLASSHTSDKDDESQGSFSGSDDGSRNDLMPMSGGKGAGGGGGGGRGG RAGSAKKGGGGGDDKRKKKLELNRIASRESRKRKKRRLEELQRSVLYLTH ENHQLREQNELLRQMLVGRMPGGAGPGGGSAPAGGPQQLPQQQPPQQQLH QPSQSISGQLQQHIPHHHQQLQPQQGGGGPGGGFMMQVAAAAAQPQHQQH HMMGGGGAMSRAGAGAMGAAAQLQQQQQQQQYGGVLGGGEGRGGGVNGYR GGKDEGLDEEEDEDEDELDEDES* back to topmRNA from alignment at chr7:922651..924410+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03350.1 ID=NO07G03350.1|Name=NO07G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1760bp|location=Sequence derived from alignment at chr7:922651..924410+ (Nannochloropsis oceanica) GGGAGAGGCAGCGAGGCGCCTTCCACACCACTTTCCCCAACAGCCAGATC
GCGAGTCTCTCAAATGCTCTACAACCACAATACCGTACCACTCCCTGACC
ACCCACGCCACCCTGTACCTTGAGATTTAGCATACTACGATCATGAGGTA
ACACGCGGGGCCGGTATCTGCGTTGTTTTGTGCGTGCTGTCGCACTTTTC
TAGCTGGCGTCATGCCTCAAGCTATGGCATTCCGAAAGCATAGATTTGAC
GTTGCCTGCCCTGCAAGTTTATCCTGGCACCCTTCTCAACGACACCACCA
CACTTGACAGGGGAGAAGATTGTTCCTGGCTCAAATTTTGGGTAGCGCCT
GAGCGCGGCACGGTGGAGGACAACAGGACCAGGTATAAGTAAGCTGACGA
CAGCGGAATCGAGGAGACCGGCCGGGAACATCTAAGCAAGAAGGGCGTGT
TATCTAGCACCAAGCACTGGCACCACTAGCAGCACCAGCAGCACCAGCGA
CAGTCCTAGCTGAAGGAGTAATAGCAACAGCTCGAGGAGATGACGTCCCT
TGCTTCGTCTCACACCTCGGACAAGGACGACGAAAGCCAGGGCTCCTTTT
CCGGCTCTGATGATGGGTCACGAAATGATCTTATGCCAATGTCAGGAGGC
AAGGGGGCCGGCGGTGGTGGTGGTGGAGGGCGAGGGGGAAGGGCGGGCAG
TGCCAAAAAAGGTGGTGGTGGTGGGGATGATAAACGGAAGAAGAAGTTGG
AACTCAATCGCATCGCATCGCGTGAAAGCCGTAAGAGGAAAAAGCGGCGC
TTGGAGGAATTGCAGAGATCTGTCTTGTATCTAACGCACGAGAATCATCA
GCTTCGTGAACAGAACGAACTCTTGAGACAGATGTTGGTCGGGCGTATGC
CAGGAGGAGCAGGGCCAGGAGGGGGTTCAGCTCCAGCAGGAGGACCTCAA
CAGCTACCGCAACAGCAGCCGCCTCAGCAACAGCTTCATCAGCCGTCACA
ATCGATTTCAGGACAGCTGCAGCAGCACATACCGCACCACCACCAGCAGT
TGCAGCCGCAGCAGGGAGGAGGTGGACCTGGAGGGGGGTTCATGATGCAG
GTGGCAGCAGCAGCGGCGCAGCCGCAGCATCAGCAGCACCACATGATGGG
AGGAGGGGGAGCCATGTCTCGAGCTGGAGCTGGGGCGATGGGAGCAGCGG
CGCAGCTCCAGCAACAGCAACAGCAACAGCAGTACGGGGGGGTACTTGGA
GGTGGAGAGGGAAGAGGCGGAGGTGTGAATGGGTATCGTGGTGGGAAGGA
CGAGGGATTGGACGAAGAAGAGGATGAGGACGAGGACGAGCTGGATGAGG
ATGAATCATAGATATACAGGATAAGGGGAGGGAGGAGAGGAAGGCATAAC
GCGAGACAGGGACTGACGGGTAGAGGTATAAAACTCACATGAAGCAGGAG
GTTCCACCTCCTACCATTGCTGGCTTTTCGGCTGCTGCAGTGGTGGATGG
TGATGGAGGAGTCCCCAAAACCTTAAAGCAATGCAAATCGAAATGATATC
CAAGCGAGAGAGACCAAGTGAAAAACAAGGGTCGGTAAAGAAAGAGGCTG
TATGCACGCACATACACGCGCGTGTGGTCGTGTGGGCTACCCACAAAATA
TGGGATGGAGGAGAAGAAGAGAGTGACGAAGGGGGGACAAACAGGAGGGA
ATCAATCAAATTATTTTTGGATATTTGTATAGAGGGAGGTGACAGGGAGG
GAACAAGGGA back to topCoding sequence (CDS) from alignment at chr7:922651..924410+ >NO07G03350.1 ID=NO07G03350.1|Name=NO07G03350.1|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at chr7:922651..924410+ (Nannochloropsis oceanica) ATGACGTCCCTTGCTTCGTCTCACACCTCGGACAAGGACGACGAAAGCCA GGGCTCCTTTTCCGGCTCTGATGATGGGTCACGAAATGATCTTATGCCAA TGTCAGGAGGCAAGGGGGCCGGCGGTGGTGGTGGTGGAGGGCGAGGGGGA AGGGCGGGCAGTGCCAAAAAAGGTGGTGGTGGTGGGGATGATAAACGGAA GAAGAAGTTGGAACTCAATCGCATCGCATCGCGTGAAAGCCGTAAGAGGA AAAAGCGGCGCTTGGAGGAATTGCAGAGATCTGTCTTGTATCTAACGCAC GAGAATCATCAGCTTCGTGAACAGAACGAACTCTTGAGACAGATGTTGGT CGGGCGTATGCCAGGAGGAGCAGGGCCAGGAGGGGGTTCAGCTCCAGCAG GAGGACCTCAACAGCTACCGCAACAGCAGCCGCCTCAGCAACAGCTTCAT CAGCCGTCACAATCGATTTCAGGACAGCTGCAGCAGCACATACCGCACCA CCACCAGCAGTTGCAGCCGCAGCAGGGAGGAGGTGGACCTGGAGGGGGGT TCATGATGCAGGTGGCAGCAGCAGCGGCGCAGCCGCAGCATCAGCAGCAC CACATGATGGGAGGAGGGGGAGCCATGTCTCGAGCTGGAGCTGGGGCGAT GGGAGCAGCGGCGCAGCTCCAGCAACAGCAACAGCAACAGCAGTACGGGG GGGTACTTGGAGGTGGAGAGGGAAGAGGCGGAGGTGTGAATGGGTATCGT GGTGGGAAGGACGAGGGATTGGACGAAGAAGAGGATGAGGACGAGGACGA GCTGGATGAGGATGAATCATAG back to top
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