|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr7 | genome | chr7:917080..920426 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03330.1 vs.
Match: EWM27043.1 (phosphoenolpyruvate carboxykinase [Nannochloropsis gaditana]) HSP 1 Score: 1061.2 bits (2743), Expect = 1.100e-306 Identity = 500/558 (89.61%), Postives = 528/558 (94.62%), Query Frame = 0
Query: 1 MLLSTMMARTGRRLALKTVHMQARGFASPAVSALGLDKLGITKPSTIFRNLSYPDLAKHEEINKEGTFIANGTFAVDTGKFTGRSPKDKWIVKQAPSEDNLWWGSVNQPINGEVFEELYKKCVAHYNTLDKAYVFDGYCGANPASRKKVRFLTEQAWQQHFVTNMFIRPETKGEIEGFAPDFTIINACRVVDEDWKKHGLNSEVFVAFNIEKRVAVIGGTHYGGEMKKGIFSMMNYWLPLEGIMPMHCSANMGKKGDTALFFGLSGTGKTTLSADPARFLIGDDEHGWDNHGIFNFEGGCYAKTINLSEKNEPDIYRAIKRDAMLENCYIDPKTKMPDYYNTSKTENGRVSYPLHHISNFEPTSMGGHPDKVIFLTCDAFGVLPPVAKLSPGQAMYHFLSGYTAKVAGTERGITEPQATFSACFGAAFLTLHPTKYADLLQKKLETHGTATYLVNTGWTGGGYGVGQRMSIKNTRTCINAILDGSIKTATFTEDPVFGFSVPQSLPGVEGGVLDPRSAWADKKAYDAQRLKLGGMFQKNYTKYVHPGVTDYSKHGPKV 559
MLLSTMM R+GRRLAL ++ QAR FASPAVSALGLDKLGIT P+TIFRNLSYPDLAKHEE NKEGTF+ANGTFAVDTGKFTGRSPKDKWIVKQAPSEDNLWWGSVNQP+ GEVFEELYKKCVAHYN LDKAY+FDGYCGANP+SRKKVRFLTEQAWQQHFVTNMFIRP++ EIEGFAPDFTIINACRVVDE WK+HG+NSEVFVAFN+EK+VA+IGGT YGGEMKKGIFSMMNYWLPLEGIMPMHCSAN GK GDTALFFGLSGTGKTTLSADP R+LIGDDEHGWD+HGIFNFEGGCYAKTINLSE+NEPDIYRAIKRDAMLEN YIDP TK+PDYYNTSKTENGRVSYPLHHI+N+EPTSMG HPDKVIFLTCDAFGVLPPVAKLSPGQAMYHFLSGYTAKVAGTERGITEPQATFSACFGAAFLTLHPTKYADLLQKKLE HGTATYLVNTGWTGGGYGVG+RMSIKNTRTCI+AILDGSIK A+F+ DPVFGFSVP++L GV VLDPR+AWADK AYDAQRLKLG MFQKNYTKYV PGVTDYS HGPKV
Sbjct: 1 MLLSTMM-RSGRRLALHSLQNQARAFASPAVSALGLDKLGITNPTTIFRNLSYPDLAKHEEANKEGTFVANGTFAVDTGKFTGRSPKDKWIVKQAPSEDNLWWGSVNQPMKGEVFEELYKKCVAHYNKLDKAYIFDGYCGANPSSRKKVRFLTEQAWQQHFVTNMFIRPQSTKEIEGFAPDFTIINACRVVDEKWKEHGINSEVFVAFNLEKKVAIIGGTFYGGEMKKGIFSMMNYWLPLEGIMPMHCSANKGKAGDTALFFGLSGTGKTTLSADPGRYLIGDDEHGWDDHGIFNFEGGCYAKTINLSEENEPDIYRAIKRDAMLENVYIDPTTKVPDYYNTSKTENGRVSYPLHHINNYEPTSMGDHPDKVIFLTCDAFGVLPPVAKLSPGQAMYHFLSGYTAKVAGTERGITEPQATFSACFGAAFLTLHPTKYADLLQKKLEKHGTATYLVNTGWTGGGYGVGKRMSIKNTRTCIDAILDGSIKNASFSTDPVFGFSVPKALHGVASDVLDPRTAWADKAAYDAQRLKLGAMFQKNYTKYVTPGVTDYSSHGPKV 557
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03330.1 ID=NO07G03330.1|Name=NO07G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2652bp
AGAGGAGGCACGCTTGTGTAAAACACTTGTCTTTGATAGGATAGGTTGCA
CACGATTATTTTAGCGTTGTAGGAAACTAGCTTGGCCCATGAGAAATCGG
TTCACTCGTGTACTCCCCAACTGACGGCGCCCTCTTGTTGATCTTGAGGA
TGTAAAGCGTATCATGCACATGGTGCAACTGGCTTTTGTGTGAGACATAC
GCATCCTACGACATCAAGACTTGTCCCATGGTAATGTGTCATCCTCAGGC
AGTGCATTAAAATATGCCGCTGTCTAAAGCAATGACATAAAGCATCTAGT
TGATTTGGTCGTCCCAGCCATACAGCAACCCAAGAACAATCGACGAAGCT
TTTCTGGTGGTTGAAGCACGCAGGCACCACACACGCCGCTTTCGTGGGGT
CTTTGTTGAAAGCACGTACCCTCTGTCACCTCCCTGGCACCTGAACATCA
TATCACACTCCTCCTTCACCCGCCACTTACCCTTTCCCTACCTCCACGCG
GGCGCCCTTTGCCTAGCAAAGCACAGCCATCCTCCACCCCTCTTCAAAGC
GCCAGCCATGCTGCTCTCCACCATGATGGCGCGCACCGGACGTCGTTTGG
CCCTGAAGACAGTGCACATGCAAGCCCGCGGCTTTGCTTCTCCCGCCGTC
TCAGCCCTGGGTCTGGACAAGCTAGGTATCACCAAACCGTCCACCATTTT
CCGCAACCTCTCTTACCCGGACCTGGCCAAGCACGAGGAGATCAACAAGG
AGGGCACGTTTATTGCCAATGGGACCTTTGCTGTAGACACGGGTAAGTTC
ACCGGTCGTTCGCCTAAGGATAAATGGATCGTAAAGCAGGCTCCCAGCGA
AGATAACCTGTGGTGGGGCTCGGTGAATCAACCGATCAACGGGGAGGTGT
TCGAGGAGCTGTACAAGAAATGCGTGGCCCACTACAATACCTTGGACAAG
GCTTACGTCTTTGATGGATACTGTGGGGCGAACCCGGCGTCGAGGAAGAA
GGTGCGATTCCTGACAGAGCAGGCGTGGCAGCAACATTTCGTGACCAACA
TGTTTATCCGGCCGGAGACTAAGGGGGAGATAGAGGGGTTTGCGCCTGAC
TTTACCATCATAAATGCGTGTCGGGTGGTGGACGAGGACTGGAAGAAGCA
TGGGTTGAACTCCGAGGTCTTCGTGGCGTTCAACATTGAGAAGAGGGTGG
CAGTCATTGGGGGCACTCACTACGGCGGTGAGATGAAAAAGGGTATTTTT
TCAATGATGAACTACTGGTTGCCCTTGGAGGGGATCATGCCTATGCATTG
CTCGGCGAATATGGGGAAGAAGGGAGACACCGCCTTGTTCTTCGGTCTCT
CGGGGACGGGAAAGACGACCTTGTCGGCGGATCCGGCGAGGTTTTTGATC
GGGGACGACGAACATGGGTGGGATAATCACGGCATTTTTAATTTCGAGGG
GGGGTGCTATGCCAAAACGATCAACCTGAGCGAAAAGAATGAGCCGGATA
TCTATCGGGCAATCAAGCGCGACGCGATGCTGGAGAACTGCTACATCGAT
CCCAAGACCAAAATGCCGGATTACTACAACACGAGCAAGACAGAAAACGG
TCGGGTCTCTTACCCCTTGCACCACATTTCGAATTTTGAGCCTACATCTA
TGGGCGGACATCCGGACAAGGTCATCTTCTTGACATGTGACGCCTTTGGT
GTGCTCCCGCCTGTGGCAAAACTCTCTCCGGGCCAGGCGATGTACCATTT
TTTGAGTGGGTACACGGCCAAGGTGGCGGGCACGGAGCGTGGGATTACAG
AGCCTCAGGCGACGTTCTCGGCGTGTTTTGGCGCGGCGTTCTTGACATTG
CACCCGACCAAGTATGCGGACTTGTTGCAGAAGAAGTTGGAGACGCATGG
GACGGCTACTTACCTGGTCAACACCGGCTGGACTGGCGGAGGATACGGTG
TGGGCCAGCGCATGTCGATCAAAAACACCCGCACTTGTATCAATGCTATC
TTGGACGGCTCTATCAAAACGGCGACTTTCACTGAAGACCCTGTGTTTGG
GTTCTCCGTCCCTCAGTCCCTGCCCGGAGTAGAGGGAGGGGTGCTGGATC
CTCGATCGGCCTGGGCGGACAAGAAGGCTTACGATGCCCAACGGTTGAAG
CTGGGTGGAATGTTCCAAAAAAACTACACGAAGTACGTGCACCCGGGTGT
GACGGACTATTCGAAACATGGGCCCAAGGTCTAAGAGGGGAGGGAGGGAG
GAGAGTGCGTTCAAGATGATGCGTGGAGGCTGATTTTGTCTAATTTTCTC
CTGTTCTCAAGCGGACGGATGCGAGGCCGCCTCGTAGGACATAAACAATG
GAAGAGGGAGAAGTGAATAACCCAGAGCGAGAGAGTGGGGGGCAGAGAGA
GAGAAAGGGTGATAGAAGAGTCGGAGGAATGATGAGAGCGGAAAAATAGA
GGGAATCATGAGCGAGAGGATGGTTTGGGAACGCAAGCCGACCATGGAAA
GAGAACATGACTTTGAAGGTAAACGAGAAAGAGGGGGGAGGCAAGCGAAC
TAACGTCACGTCCCTCAGTAACTCTGCAGGGCGCTGTGCCAAGAATGGAG
AAGAAGAGGAAGGAAATGAATAGGAGTGGGAGAAGGAGGAGAAGGAGGAG
AA back to topprotein sequence of NO07G03330.1 >NO07G03330.1-protein ID=NO07G03330.1-protein|Name=NO07G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=559bp
MLLSTMMARTGRRLALKTVHMQARGFASPAVSALGLDKLGITKPSTIFRN
LSYPDLAKHEEINKEGTFIANGTFAVDTGKFTGRSPKDKWIVKQAPSEDN
LWWGSVNQPINGEVFEELYKKCVAHYNTLDKAYVFDGYCGANPASRKKVR
FLTEQAWQQHFVTNMFIRPETKGEIEGFAPDFTIINACRVVDEDWKKHGL
NSEVFVAFNIEKRVAVIGGTHYGGEMKKGIFSMMNYWLPLEGIMPMHCSA
NMGKKGDTALFFGLSGTGKTTLSADPARFLIGDDEHGWDNHGIFNFEGGC
YAKTINLSEKNEPDIYRAIKRDAMLENCYIDPKTKMPDYYNTSKTENGRV
SYPLHHISNFEPTSMGGHPDKVIFLTCDAFGVLPPVAKLSPGQAMYHFLS
GYTAKVAGTERGITEPQATFSACFGAAFLTLHPTKYADLLQKKLETHGTA
TYLVNTGWTGGGYGVGQRMSIKNTRTCINAILDGSIKTATFTEDPVFGFS
VPQSLPGVEGGVLDPRSAWADKKAYDAQRLKLGGMFQKNYTKYVHPGVTD
YSKHGPKV* back to topmRNA from alignment at chr7:917080..920426+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03330.1 ID=NO07G03330.1|Name=NO07G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=3347bp|location=Sequence derived from alignment at chr7:917080..920426+ (Nannochloropsis oceanica)
AGAGGAGGCACGCTTGTGTAAAACACTTGTCTTTGATAGGATAGGTTGCA
CACGATTATTTTAGCGTTGTAGGAAACTAGCTTGGCCCATGAGAAATCGG
TTCACTCGTGTACTCCCCAACTGACGGCGCCCTCTTGTTGATCTTGAGGA
TGTAAAGCGTATCATGCACATGGTGCAACTGGCTTTTGTGTGAGACATAC
GCATCCTACGACATCAAGACTTGTCCCATGGTAATGTGTCATCCTCAGGC
AGTGCATTAAAATATGCCGCTGTCTAAAGCAATGACATAAAGCATCTAGT
TGATTTGGTCGTCCCAGCCATACAGCAACCCAAGAACAATCGACGAAGCT
TTTCTGGTGGTTGAAGCACGCAGGCACCACACACGCCGCTTTCGTGGGGT
CTTTGTTGAAAGCACGTACCCTCTGTCACCTCCCTGGCACCTGAACATCA
TATCACACTCCTCCTTCACCCGCCACTTACCCTTTCCCTACCTCCACGCG
GGCGCCCTTTGCCTAGCAAAGCACAGCCATCCTCCACCCCTCTTCAAAGC
GCCAGCCATGCTGCTCTCCACCATGATGGCGCGCACCGGACGTCGTTTGG
CCCTGAAGACAGTGCACATGCAAGCCCGGTACGTCCTCTAAGTGTGACGG
TTTGAGGCACAGACGTAGCAAGGCGGGATATTTTCAGCGTGTGTGGTGAC
ATGGCCCGCCTTGACCCGACCCGTTCGTGCCATGTGTAAAACTCAGACTG
GGGTGGAAAGGACGGGTCTCTATATGCAAGCGTAAAGGACCGCCTGGGTC
TGTTAGCTCTTAGAAAGCTTGTTTGTAATATGTGTAACCATTTCGTTACA
ATGGAATGTTCGGATACCTTTTTGTTGCGTCTTGGACCATAATGTCAGTG
CCTCTATCTCCCTTCCTCTCTTTTCGGCCTTTCCCCCCCCCCCCCCCCCA
CAATAGCGCGGTTGCCTGTCTGATTTTGCATTCTCGCAAGTCAAAATCTT
GACTACAATAACTGACCTTCTTCCTTTTCCTCTCTCCAGCGGCTTTGCTT
CTCCCGCCGTCTCAGCCCTGGGTCTGGACAAGCTAGGTATCACCAAACCG
TCCACCATTTTCCGCAACCTCTCTTACCCGGACCTGGCCAAGCACGAGGA
GATCAACAAGGAGGTAAGTATTTTTTTAATGGCATAGTGAGAAAGTGCTG
TACCTTTCGTGTATCTTTTTGGTATGGCTTGCCAGCTGGTGCTCCTTCTT
TTCCTGAGCCCTCCCCCTCCCCCTCCACCCTCCACCCTCACTTCTTCCTT
TAGGGCACGTTTATTGCCAATGGGACCTTTGCTGTAGACACGGGTAAGTT
CACCGGTCGTTCGCCTAAGGATAAATGGATCGTAAAGCAGGCTCCCAGCG
AAGATAACCTGTGGTGGGGCTCGGTGAATCAACCGATCAACGGGGAGGTG
TTCGAGGAGCTGTACAAGAAATGCGTGGCCCACTACAATACCTTGGACAA
GGCTTACGTCTTTGATGGATACTGTGGGGCGAACCCGGCGTCGAGGAAGA
AGGTGCGATTCCTGACAGAGCAGGCGTGGCAGCAACATTTCGTGACCAAC
ATGTTTATCCGGCCGGAGACTAAGGGGGAGATAGAGGGGTTTGCGCCTGA
CTTTACCATCATAAATGCGTGTCGGGTGGTGGACGAGGACTGGAAGAAGC
ATGGGTTGAACTCCGAGGTCTTCGTGGCGTTCAACATTGAGAAGAGGGTG
GCAGTCATTGGGGGCACTCACTACGGCGGTGAGATGAAAAAGGGTATTTT
TTCAATGATGAACTACTGGTTGCCCTTGGAGGGGATCATGCCTATGCATT
GCTCGGCGAATATGGGGAAGAAGGGAGACACCGCCTTGTTCTTCGGTCTC
TCGGGGACGGGAAAGACGACCTTGTCGGCGGATCCGGCGAGGTTTTTGAT
CGGGGACGACGAACATGGGTGGGATAATCACGGCATTTTTAATTTCGAGG
GGGGGTGCTATGCCAAAACGATCAACCTGAGCGAAAAGAATGAGCCGGAT
ATCTATCGGGCAATCAAGCGCGACGCGATGCTGGAGAACTGCTACATCGA
TCCCAAGACCAAAATGCCGGATTACTACAACACGAGCAAGACAGAAAACG
GTCGGGTCTCTTACCCCTTGCACCACATTTCGAATTTTGAGCCTACATCT
ATGGGCGGACATCCGGACAAGGTCATCTTCTTGACATGTGACGCCTTTGG
TGTGCTCCCGCCTGTGGCAAAACTCTCTCCGGGCCAGGCGATGTACCATT
TTTTGAGTGGGTACACGGCCAAGGTGGCGGGCACGGAGCGTGGGATTACA
GAGCCTCAGGCGACGTTCTCGGCGTGTTTTGGCGCGGCGTTCTTGACATT
GCACCCGACCAAGTATGCGGACTTGTTGCAGAAGAAGTTGGAGACGCATG
GGACGGTACGTGTTAGGTCATGCGATGACTTGCTTTACTCCTTCCCTCCC
TCCCTCCCTTGTACCTCTCTCTGACGTGTAATGTAGCGCTCGTCTCTGGA
TATAAATATCCACCACCCCTAACCCTTCCTGTCTTTCCTCCCTCCCTAGG
CTACTTACCTGGTCAACACCGGCTGGACTGGCGGAGGATACGGTGTGGGC
CAGCGCATGTCGATCAAAAACACCCGCACTTGTATCAATGCTATCTTGGA
CGGCTCTATCAAAACGGCGACTTTCACTGAAGACCCTGTGTTTGGGTTCT
CCGTCCCTCAGTCCCTGCCCGGAGTAGAGGGAGGGGTGCTGGATCCTCGA
TCGGCCTGGGCGGACAAGAAGGCTTACGATGCCCAACGGTTGAAGCTGGG
TGGAATGTTCCAAAAAAACTACACGAAGTACGTGCACCCGGGTGTGACGG
ACTATTCGAAACATGGGCCCAAGGTCTAAGAGGGGAGGGAGGGAGGAGAG
TGCGTTCAAGATGATGCGTGGAGGCTGATTTTGTCTAATTTTCTCCTGTT
CTCAAGCGGACGGATGCGAGGCCGCCTCGTAGGACATAAACAATGGAAGA
GGGAGAAGTGAATAACCCAGAGCGAGAGAGTGGGGGGCAGAGAGAGAGAA
AGGGTGATAGAAGAGTCGGAGGAATGATGAGAGCGGAAAAATAGAGGGAA
TCATGAGCGAGAGGATGGTTTGGGAACGCAAGCCGACCATGGAAAGAGAA
CATGACTTTGAAGGTAAACGAGAAAGAGGGGGGAGGCAAGCGAACTAACG
TCACGTCCCTCAGTAACTCTGCAGGGCGCTGTGCCAAGAATGGAGAAGAA
GAGGAAGGAAATGAATAGGAGTGGGAGAAGGAGGAGAAGGAGGAGAA back to topCoding sequence (CDS) from alignment at chr7:917080..920426+ >NO07G03330.1 ID=NO07G03330.1|Name=NO07G03330.1|organism=Nannochloropsis oceanica|type=CDS|length=1677bp|location=Sequence derived from alignment at chr7:917080..920426+ (Nannochloropsis oceanica)
ATGCTGCTCTCCACCATGATGGCGCGCACCGGACGTCGTTTGGCCCTGAA
GACAGTGCACATGCAAGCCCGCGGCTTTGCTTCTCCCGCCGTCTCAGCCC
TGGGTCTGGACAAGCTAGGTATCACCAAACCGTCCACCATTTTCCGCAAC
CTCTCTTACCCGGACCTGGCCAAGCACGAGGAGATCAACAAGGAGGGCAC
GTTTATTGCCAATGGGACCTTTGCTGTAGACACGGGTAAGTTCACCGGTC
GTTCGCCTAAGGATAAATGGATCGTAAAGCAGGCTCCCAGCGAAGATAAC
CTGTGGTGGGGCTCGGTGAATCAACCGATCAACGGGGAGGTGTTCGAGGA
GCTGTACAAGAAATGCGTGGCCCACTACAATACCTTGGACAAGGCTTACG
TCTTTGATGGATACTGTGGGGCGAACCCGGCGTCGAGGAAGAAGGTGCGA
TTCCTGACAGAGCAGGCGTGGCAGCAACATTTCGTGACCAACATGTTTAT
CCGGCCGGAGACTAAGGGGGAGATAGAGGGGTTTGCGCCTGACTTTACCA
TCATAAATGCGTGTCGGGTGGTGGACGAGGACTGGAAGAAGCATGGGTTG
AACTCCGAGGTCTTCGTGGCGTTCAACATTGAGAAGAGGGTGGCAGTCAT
TGGGGGCACTCACTACGGCGGTGAGATGAAAAAGGGTATTTTTTCAATGA
TGAACTACTGGTTGCCCTTGGAGGGGATCATGCCTATGCATTGCTCGGCG
AATATGGGGAAGAAGGGAGACACCGCCTTGTTCTTCGGTCTCTCGGGGAC
GGGAAAGACGACCTTGTCGGCGGATCCGGCGAGGTTTTTGATCGGGGACG
ACGAACATGGGTGGGATAATCACGGCATTTTTAATTTCGAGGGGGGGTGC
TATGCCAAAACGATCAACCTGAGCGAAAAGAATGAGCCGGATATCTATCG
GGCAATCAAGCGCGACGCGATGCTGGAGAACTGCTACATCGATCCCAAGA
CCAAAATGCCGGATTACTACAACACGAGCAAGACAGAAAACGGTCGGGTC
TCTTACCCCTTGCACCACATTTCGAATTTTGAGCCTACATCTATGGGCGG
ACATCCGGACAAGGTCATCTTCTTGACATGTGACGCCTTTGGTGTGCTCC
CGCCTGTGGCAAAACTCTCTCCGGGCCAGGCGATGTACCATTTTTTGAGT
GGGTACACGGCCAAGGTGGCGGGCACGGAGCGTGGGATTACAGAGCCTCA
GGCGACGTTCTCGGCGTGTTTTGGCGCGGCGTTCTTGACATTGCACCCGA
CCAAGTATGCGGACTTGTTGCAGAAGAAGTTGGAGACGCATGGGACGGCT
ACTTACCTGGTCAACACCGGCTGGACTGGCGGAGGATACGGTGTGGGCCA
GCGCATGTCGATCAAAAACACCCGCACTTGTATCAATGCTATCTTGGACG
GCTCTATCAAAACGGCGACTTTCACTGAAGACCCTGTGTTTGGGTTCTCC
GTCCCTCAGTCCCTGCCCGGAGTAGAGGGAGGGGTGCTGGATCCTCGATC
GGCCTGGGCGGACAAGAAGGCTTACGATGCCCAACGGTTGAAGCTGGGTG
GAATGTTCCAAAAAAACTACACGAAGTACGTGCACCCGGGTGTGACGGAC
TATTCGAAACATGGGCCCAAGGTCTAA back to top
|