NO07G03310.1, NO07G03310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03310.1
Unique NameNO07G03310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length735
Alignment locationchr7:912337..913203 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:912337..913203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G03310.1 vs.
Match: EWM27030.1 (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 396.7 bits (1018), Expect = 5.100e-107
Identity = 205/244 (84.02%), Postives = 216/244 (88.52%), Query Frame = 0 
Query:    1 MFRKLALALLCSSAVAFQVPAPLTRGSVRLHAEGKPAAPPAAAPPAAAPAAAAPAAAAPAAAAVKPPPPPPPPKVFSKSVPFLLKPAGLDGMVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTGHATFSS 245
            MFRKLALALLCSSAVAF  PAP++R SVRL AE KPAAPPAAAP          AAAAPAAAA  PPPP  P  VFSKSVPFLLKP  LDGMVGDVGFDPLG A ++DIRWLREAELKNGRVAMLAFLGF+VQEFIRLPGDLYSEPNGVKAFFQVGPQPL+QIFLFCGFLEF +HKGK+TQ+DMF DGKREPGNFGFDPLGFGKDP+KRER ALAELKNGRLAMIAIGGL+HHALVTGHATFSS
Sbjct:   62 MFRKLALALLCSSAVAFHAPAPVSRSSVRLQAENKPAAPPAAAP----------AAAAPAAAAAAPPPPAKPQPVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGHATFSS 295
The following BLAST results are available for this feature:
BLAST of NO07G03310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27030.15.100e-10784.02light-harvesting protein [Nannochloropsis gaditana... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03310NO07G03310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03310.1NO07G03310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03310.1.cds1NO07G03310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03310.1.cds2NO07G03310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03310.1 ID=NO07G03310.1|Name=NO07G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=735bp
ATGTTCCGCAAGCTTGCGCTGGCCCTCCTGTGCTCCTCCGCCGTCGCCTT
CCAGGTGCCGGCCCCCCTCACCCGAGGCTCGGTGCGCCTTCATGCCGAAG
GCAAGCCCGCCGCTCCCCCTGCCGCCGCTCCCCCTGCCGCTGCTCCCGCT
GCTGCGGCTCCCGCTGCTGCCGCCCCAGCTGCCGCCGCTGTCAAGCCCCC
TCCTCCCCCGCCCCCCCCTAAGGTCTTCTCCAAGTCGGTGCCTTTCCTGT
TGAAGCCTGCGGGTCTGGACGGGATGGTCGGCGACGTCGGCTTTGATCCC
CTAGGGTTCGCGACCTTCATCGACATCCGATGGCTGCGAGAGGCTGAGCT
GAAGAACGGCCGAGTGGCCATGCTCGCCTTCCTGGGCTTTATCGTCCAAG
AGTTTATCCGCCTCCCTGGTGACCTCTACTCGGAGCCCAACGGCGTCAAG
GCGTTCTTCCAAGTCGGACCCCAGCCGCTTCTGCAAATCTTCCTGTTCTG
CGGTTTTCTTGAGTTTAATATGCACAAGGGTAAGCTGACTCAAGTCGACA
TGTTTGAGGACGGCAAGCGCGAGCCCGGCAACTTTGGGTTCGATCCGCTT
GGATTTGGCAAGGACCCTGCGAAGCGCGAGAGGTATGCACTTGCTGAGCT
GAAGAACGGCCGGTTGGCAATGATTGCGATCGGCGGCCTGGTGCACCATG
CGTTGGTGACAGGTCATGCCACGTTTAGTAGCTAA
back to top

protein sequence of NO07G03310.1

>NO07G03310.1-protein ID=NO07G03310.1-protein|Name=NO07G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MFRKLALALLCSSAVAFQVPAPLTRGSVRLHAEGKPAAPPAAAPPAAAPA
AAAPAAAAPAAAAVKPPPPPPPPKVFSKSVPFLLKPAGLDGMVGDVGFDP
LGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVK
AFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPL
GFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTGHATFSS*
back to top

mRNA from alignment at chr7:912337..913203+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03310.1 ID=NO07G03310.1|Name=NO07G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=867bp|location=Sequence derived from alignment at chr7:912337..913203+ (Nannochloropsis oceanica)
ATGTTCCGCAAGCTTGCGCTGGCCCTCCTGTGCTCCTCCGCCGTCGCCTT
CCAGGTGCCGGCCCCCCTCACCCGAGGCTCGGTGCGCCTTCATGCCGAAG
GCAAGCCCGCCGCTCCCCCTGCCGCCGCTCCCCCTGCCGCTGCTCCCGCT
GCTGCGGCTCCCGCTGCTGCCGCCCCAGCTGCCGCCGCTGTCAAGCCCCC
TCCTCCCCCGCCCCCCCCTAAGGTCTTCTCCAAGTCGGTGCCTTTCCTGT
TGAAGCCTGCGGGTCTGGACGGGATGGTCGGCGACGTCGGCTTTGATCCC
CTAGGGTTCGCGACCTTCATCGACATCCGATGGCTGCGAGAGGCTGAGCT
GAAGAACGGTATGTCCTCACAATTATGATGAGGATAGGGCGTGTGTCGTA
TTGTCGGGCAGGCAAGACAGGAAGAATATGAGAAGCCTTATAACGACCTT
CTCACACCACCCCTCTCTCCTATGAAACTCTTCACCCCAGGCCGAGTGGC
CATGCTCGCCTTCCTGGGCTTTATCGTCCAAGAGTTTATCCGCCTCCCTG
GTGACCTCTACTCGGAGCCCAACGGCGTCAAGGCGTTCTTCCAAGTCGGA
CCCCAGCCGCTTCTGCAAATCTTCCTGTTCTGCGGTTTTCTTGAGTTTAA
TATGCACAAGGGTAAGCTGACTCAAGTCGACATGTTTGAGGACGGCAAGC
GCGAGCCCGGCAACTTTGGGTTCGATCCGCTTGGATTTGGCAAGGACCCT
GCGAAGCGCGAGAGGTATGCACTTGCTGAGCTGAAGAACGGCCGGTTGGC
AATGATTGCGATCGGCGGCCTGGTGCACCATGCGTTGGTGACAGGTCATG
CCACGTTTAGTAGCTAA
back to top

Coding sequence (CDS) from alignment at chr7:912337..913203+

>NO07G03310.1 ID=NO07G03310.1|Name=NO07G03310.1|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr7:912337..913203+ (Nannochloropsis oceanica)
ATGTTCCGCAAGCTTGCGCTGGCCCTCCTGTGCTCCTCCGCCGTCGCCTT
CCAGGTGCCGGCCCCCCTCACCCGAGGCTCGGTGCGCCTTCATGCCGAAG
GCAAGCCCGCCGCTCCCCCTGCCGCCGCTCCCCCTGCCGCTGCTCCCGCT
GCTGCGGCTCCCGCTGCTGCCGCCCCAGCTGCCGCCGCTGTCAAGCCCCC
TCCTCCCCCGCCCCCCCCTAAGGTCTTCTCCAAGTCGGTGCCTTTCCTGT
TGAAGCCTGCGGGTCTGGACGGGATGGTCGGCGACGTCGGCTTTGATCCC
CTAGGGTTCGCGACCTTCATCGACATCCGATGGCTGCGAGAGGCTGAGCT
GAAGAACGGCCGAGTGGCCATGCTCGCCTTCCTGGGCTTTATCGTCCAAG
AGTTTATCCGCCTCCCTGGTGACCTCTACTCGGAGCCCAACGGCGTCAAG
GCGTTCTTCCAAGTCGGACCCCAGCCGCTTCTGCAAATCTTCCTGTTCTG
CGGTTTTCTTGAGTTTAATATGCACAAGGGTAAGCTGACTCAAGTCGACA
TGTTTGAGGACGGCAAGCGCGAGCCCGGCAACTTTGGGTTCGATCCGCTT
GGATTTGGCAAGGACCCTGCGAAGCGCGAGAGGTATGCACTTGCTGAGCT
GAAGAACGGCCGGTTGGCAATGATTGCGATCGGCGGCCTGGTGCACCATG
CGTTGGTGACAGGTCATGCCACGTTTAGTAGCTAA
back to top
Synonyms
Publications