NO07G03300.1, NO07G03300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03300.1
Unique NameNO07G03300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length819
Alignment locationchr7:910297..911206 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:910297..911206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G03300.1 vs.
Match: EWM27036.1 (hypothetical protein Naga_100056g16 [Nannochloropsis gaditana])

HSP 1 Score: 110.5 bits (275), Expect = 8.100e-21
Identity = 103/313 (32.91%), Postives = 146/313 (46.65%), Query Frame = 0 
Query:    1 MRPASPREGSQLSASWIILDQDGEEVALQQR--------------------------------------SPRICHTFNEDEEEMLGMLSLHPDEAA-AFTSSTGGRSVWGSMFCMLDRGTMAMPAATTAEGEEREEEMKEEEERNEDAGATGEMQDQQQEEQQPAAPVAAAAAVDSVPAISEDGKESGDEGDIKDGGWWNHVPSLLMTHLRTILKTLSNPPSCC------CLQDELRSACPYLRRQPRQRMLLITVVVPVAMMVGVTAAVVLVGVCASGS--SSSPSTTKRGGRESCPATTPCSSASSSTAKA 267
            M+P++PRE  +LSASWII+D +GEEV L +R                                       P +  + N ++  M+ + ++  +E A     S G R               A P   T     RE+E +EEEE  +      + Q QQQEE + +   ++ A   S P   E  +  GD       GW     S++M H R ILK+ S+  S C       ++D+LR ACPYLRRQ RQR+LLIT  +PVA++VGVTAA+VLV VC S +  SS PS+       S  ++   S A  + A+A
Sbjct:    1 MQPSTPREPHRLSASWIIIDGEGEEVTLDRRNQHNGLSLREEDGGDGTFTVLTLHPDGGALRSEDERRDGPLLDSSLNLNDGRMIELPTMLEEEGADGMYPSDGARRE-------------ASPRRDTPRQGGREQEEEEEEEEQQ------QQQQQQQEEARVSPRASSRAEGPSQPPTDERSENGGD-------GWRKRATSVVMAHFRAILKSFSHRASYCGTGAGYSIEDKLRMACPYLRRQSRQRLLLITTTIPVAVIVGVTAAIVLVSVCVSSTHPSSIPSSFSSSSSSSSSSSFSESEARGNRARA 287
The following BLAST results are available for this feature:
BLAST of NO07G03300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27036.18.100e-2132.91hypothetical protein Naga_100056g16 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03300NO07G03300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03300.1NO07G03300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03300.1.cds1NO07G03300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03300.1.cds2NO07G03300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03300.1 ID=NO07G03300.1|Name=NO07G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=819bp
ATGCGCCCCGCCTCGCCCCGTGAGGGCTCCCAGCTGTCCGCGTCATGGAT
TATCCTCGATCAGGACGGGGAGGAGGTGGCCCTGCAGCAGCGAAGCCCAC
GCATCTGCCATACGTTCAACGAAGACGAAGAGGAGATGCTGGGCATGTTG
TCTCTTCATCCGGACGAGGCGGCCGCTTTCACGAGCAGTACCGGGGGCCG
GTCCGTATGGGGTAGCATGTTCTGTATGCTTGACCGCGGGACCATGGCCA
TGCCTGCTGCTACGACGGCAGAGGGGGAGGAAAGGGAGGAAGAAATGAAA
GAGGAAGAGGAGCGGAACGAGGACGCGGGTGCGACAGGTGAAATGCAAGA
TCAGCAACAGGAGGAACAGCAACCCGCCGCGCCAGTTGCAGCGGCAGCAG
CAGTCGATTCGGTGCCTGCTATTTCGGAAGATGGGAAGGAGAGCGGAGAC
GAAGGGGACATTAAGGATGGTGGGTGGTGGAATCATGTCCCGTCTCTTTT
GATGACGCATCTCAGGACTATCCTCAAAACCCTCTCGAACCCTCCGTCAT
GCTGCTGCCTCCAAGACGAGCTGCGTTCGGCTTGCCCCTATCTCAGAAGG
CAACCCCGGCAACGCATGCTCTTGATCACTGTTGTCGTGCCTGTCGCGAT
GATGGTCGGGGTGACAGCCGCCGTGGTCCTGGTCGGTGTGTGCGCGTCGG
GCTCGTCCTCCTCCCCGTCGACAACGAAGCGCGGAGGCCGCGAGTCGTGC
CCGGCCACGACGCCATGTTCCAGCGCCTCCTCGAGCACTGCCAAAGCGCC
CCTCTTCCGCGTCTTGTAA
back to top

protein sequence of NO07G03300.1

>NO07G03300.1-protein ID=NO07G03300.1-protein|Name=NO07G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MRPASPREGSQLSASWIILDQDGEEVALQQRSPRICHTFNEDEEEMLGML
SLHPDEAAAFTSSTGGRSVWGSMFCMLDRGTMAMPAATTAEGEEREEEMK
EEEERNEDAGATGEMQDQQQEEQQPAAPVAAAAAVDSVPAISEDGKESGD
EGDIKDGGWWNHVPSLLMTHLRTILKTLSNPPSCCCLQDELRSACPYLRR
QPRQRMLLITVVVPVAMMVGVTAAVVLVGVCASGSSSSPSTTKRGGRESC
PATTPCSSASSSTAKAPLFRVL*
back to top

mRNA from alignment at chr7:910297..911206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03300.1 ID=NO07G03300.1|Name=NO07G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=910bp|location=Sequence derived from alignment at chr7:910297..911206+ (Nannochloropsis oceanica)
ATGCGCCCCGCCTCGCCCCGTGAGGGCTCCCAGCTGTCCGCGTCATGGAT
TATCCTCGATCAGGACGGGGAGGAGGTGGCCCTGCAGCAGGTAAGACCCG
AAAGGCACACACAAGTTGACACGCCATGGAAATAGGTCCCACGCTCGCTT
TGGCCCCTTCCCTCTTCTGCCACACCCACAGCGAAGCCCACGCATCTGCC
ATACGTTCAACGAAGACGAAGAGGAGATGCTGGGCATGTTGTCTCTTCAT
CCGGACGAGGCGGCCGCTTTCACGAGCAGTACCGGGGGCCGGTCCGTATG
GGGTAGCATGTTCTGTATGCTTGACCGCGGGACCATGGCCATGCCTGCTG
CTACGACGGCAGAGGGGGAGGAAAGGGAGGAAGAAATGAAAGAGGAAGAG
GAGCGGAACGAGGACGCGGGTGCGACAGGTGAAATGCAAGATCAGCAACA
GGAGGAACAGCAACCCGCCGCGCCAGTTGCAGCGGCAGCAGCAGTCGATT
CGGTGCCTGCTATTTCGGAAGATGGGAAGGAGAGCGGAGACGAAGGGGAC
ATTAAGGATGGTGGGTGGTGGAATCATGTCCCGTCTCTTTTGATGACGCA
TCTCAGGACTATCCTCAAAACCCTCTCGAACCCTCCGTCATGCTGCTGCC
TCCAAGACGAGCTGCGTTCGGCTTGCCCCTATCTCAGAAGGCAACCCCGG
CAACGCATGCTCTTGATCACTGTTGTCGTGCCTGTCGCGATGATGGTCGG
GGTGACAGCCGCCGTGGTCCTGGTCGGTGTGTGCGCGTCGGGCTCGTCCT
CCTCCCCGTCGACAACGAAGCGCGGAGGCCGCGAGTCGTGCCCGGCCACG
ACGCCATGTTCCAGCGCCTCCTCGAGCACTGCCAAAGCGCCCCTCTTCCG
CGTCTTGTAA
back to top

Coding sequence (CDS) from alignment at chr7:910297..911206+

>NO07G03300.1 ID=NO07G03300.1|Name=NO07G03300.1|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at chr7:910297..911206+ (Nannochloropsis oceanica)
ATGCGCCCCGCCTCGCCCCGTGAGGGCTCCCAGCTGTCCGCGTCATGGAT
TATCCTCGATCAGGACGGGGAGGAGGTGGCCCTGCAGCAGCGAAGCCCAC
GCATCTGCCATACGTTCAACGAAGACGAAGAGGAGATGCTGGGCATGTTG
TCTCTTCATCCGGACGAGGCGGCCGCTTTCACGAGCAGTACCGGGGGCCG
GTCCGTATGGGGTAGCATGTTCTGTATGCTTGACCGCGGGACCATGGCCA
TGCCTGCTGCTACGACGGCAGAGGGGGAGGAAAGGGAGGAAGAAATGAAA
GAGGAAGAGGAGCGGAACGAGGACGCGGGTGCGACAGGTGAAATGCAAGA
TCAGCAACAGGAGGAACAGCAACCCGCCGCGCCAGTTGCAGCGGCAGCAG
CAGTCGATTCGGTGCCTGCTATTTCGGAAGATGGGAAGGAGAGCGGAGAC
GAAGGGGACATTAAGGATGGTGGGTGGTGGAATCATGTCCCGTCTCTTTT
GATGACGCATCTCAGGACTATCCTCAAAACCCTCTCGAACCCTCCGTCAT
GCTGCTGCCTCCAAGACGAGCTGCGTTCGGCTTGCCCCTATCTCAGAAGG
CAACCCCGGCAACGCATGCTCTTGATCACTGTTGTCGTGCCTGTCGCGAT
GATGGTCGGGGTGACAGCCGCCGTGGTCCTGGTCGGTGTGTGCGCGTCGG
GCTCGTCCTCCTCCCCGTCGACAACGAAGCGCGGAGGCCGCGAGTCGTGC
CCGGCCACGACGCCATGTTCCAGCGCCTCCTCGAGCACTGCCAAAGCGCC
CCTCTTCCGCGTCTTGTAA
back to top
Synonyms
Publications