NO07G03280.1, NO07G03280.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G03280.1
Unique Name	NO07G03280.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2120
Alignment location	chr7:905428..907547 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:905428..907547 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G03280.1 vs.
Match: EWM27058.1 (hypothetical protein Naga_100056g18 [Nannochloropsis gaditana])

HSP 1 Score: 289.7 bits (740), Expect = 2.200e-74
Identity = 294/668 (44.01%), Postives = 343/668 (51.35%), Query Frame = 0

Query:    2 QALPLLFLALVVAAAVAASSRMWGAPSSSTSAAFHHQRSHRGRLAFDYPAYESSSSSQHSGGPPSSPPPPPGGPYQSHPHHQHQHQQHQRSPA-----GAGPGQYSPPPLPPHHQQQHQQHPQHQQHQHTQDQWGG---YGQQPPPSQQQQGGDLGAEGGQGQGPYDGGQGGQGGGYGAFYSSQGQHGYGSYYGVQPGGQGGGAAAGQPEGPSVGAKIKGLWGSLKEKIASGVDSVSKSSTVENGLRYLARDYEQPGGGSGGYYGGGPSYEGAGAGGAPQLLPGGGAYSSPQQQQQQPPTQGGIWGDSTRGYPGP---YGPP--------PGHQQYQQHQQQQP-QMPYPSSRGAYPPPDERE----------REEDEPSQHKIVNEMQERFRTQGRLEERGGPPPPPLQGWQMPPQQQQQQQHQQHQQHQQQRPVVPGGSVPTAPAAGTNPPVGGPWGYSTQGPPPSQQQQ--QQQQQQQRHPSEGPARPPTTVQQQQGSYPGAGEQQRYGAGVGGEAAYPQHQQHQQHQRPAPQHQQVYPPRQQ---PQQEQQQQYPPSRPSSQHQQRYQTPSSGGQHESGSSGISDQQQQYQ------QQQQPHP--EEEGSEGGGSNGAAAPPDRAGGAAATGGAPAGASGAAGAA--APSEEVRDVWGHEEDF 625
            +A  L  L L  AA V A   M   P SSTS+    +R+HRGRLAFDYPAY+++ +   SGGPP  PPPPPGG Y +HP        HQRSP       +GPGQY PPP PP H   H QH Q QQ  H QDQWGG   YGQ   P  +Q G      G +G G YD GQ   G  YGA+Y SQG+HGYG+YYGV PG  G G A  + EGPSVG K+KGLWGS KEKIASGVDSVSKSSTVENGLRYLARDY+QPGGGSGGYYGG P Y+  G   APQ LPGGGAY  P     Q P   G W    R   GP   YGPP        P    Y    ++QP   P PS + AYPP +              EEDEPSQH+IVNEMQ+R+R QGR   RG        GW   P                    VPG      P+ G   P GGPWG+    PPP+QQ Q  Q QQ++ + P +G A+ P  V                  GV     Y   QQ Q   RP P     +P  QQ   P       + P  P+S     Y TP  G  H +G+      QQ  Q      Q Q+P+P  EEEG EG    G + PP  +   +  G      +   G+A  +PSEEVR VW  +E+F
Sbjct:    7 RAQELSVLLLAFAALVTARQLMCRGPLSSTSS----RRTHRGRLAFDYPAYDTNPAQYASGGPPP-PPPPPGGLYHAHPPPAQHQPHHQRSPERTGTPASGPGQYPPPPPPPPH---HHQHQQAQQPPHPQDQWGGPGGYGQGGSPPPRQDG-----PGAEGPGRYDQGQPVGGENYGAYYGSQGEHGYGAYYGVPPGQGGQGGA--RTEGPSVGEKLKGLWGSFKEKIASGVDSVSKSSTVENGLRYLARDYDQPGGGSGGYYGG-PVYDSQGGHQAPQSLPGGGAYGPPATHMHQSPQGAGSWSSPGRDGSGPGARYGPPSSRGVPPPPPPPAYFPPGEKQPLSYPPPSRQPAYPPREAGSPRTPHGPGTPAEEDEPSQHRIVNEMQDRYRAQGR---RGEEDEATRHGWPTQP--------------------VPGPG--PGPSGGRLGP-GGPWGH----PPPAQQPQAPQYQQREGQRPGQGGAKAPPYVH-----------------GVDDRPPYFSQQQQQAFARPPPSQHGGFPHSQQDYGPPPPTSHGHGPPPPASS----YPTPGPG--HGAGTDAAPGTQQPQQAPQEEVQSQRPYPTLEEEG-EGEKGKGESVPPASSAAGSYQGKDSTERTRPTGSARTSPSEEVRTVWALDEEF 604

The following BLAST results are available for this feature:

BLAST of NO07G03280.1 vs.

BLAST of NO07G03280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27058.1	2.200e-74	44.01	hypothetical protein Naga_100056g18 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G03280	NO07G03280	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G03280.1	NO07G03280.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G03280.1.cds1	NO07G03280.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:905428..907547-
coding sequence from alignment at chr7:905428..907547-

mRNA sequence

>NO07G03280.1 ID=NO07G03280.1|Name=NO07G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2120bp
ATGCAGGCCTTGCCCCTCCTCTTTCTGGCCCTGGTCGTCGCGGCAGCTGT
CGCGGCCTCCAGCCGAATGTGGGGAGCGCCCTCGTCCTCTACCTCTGCAG
CTTTCCACCACCAGCGTTCCCACCGCGGACGACTCGCCTTTGACTACCCA
GCCTACGAATCCTCATCATCGTCACAACATTCCGGTGGTCCTCCTTCATC
TCCTCCCCCTCCTCCTGGTGGTCCTTACCAGTCGCATCCCCATCACCAAC
ACCAACACCAGCAGCACCAAAGGTCGCCTGCGGGGGCAGGGCCAGGACAG
TACTCTCCTCCTCCTCTTCCTCCCCACCATCAGCAACAGCACCAACAGCA
CCCACAGCACCAACAGCATCAACACACACAAGATCAATGGGGTGGTTACG
GCCAGCAGCCGCCTCCTTCCCAACAGCAGCAAGGCGGGGACCTTGGTGCC
GAGGGAGGACAAGGACAGGGGCCGTATGATGGAGGGCAGGGGGGGCAAGG
AGGAGGATATGGAGCATTCTATAGTAGCCAGGGGCAACATGGCTATGGGT
CTTACTACGGCGTGCAGCCTGGGGGGCAGGGAGGAGGGGCAGCAGCAGGG
CAGCCGGAAGGACCGTCCGTGGGTGCCAAGATTAAGGGATTGTGGGGGAG
TTTGAAGGAGAAGATCGCGAGTGGCGTTGATTCAGTCTCCAAGAGCAGTA
CTGTCGAGAATGGCTTGAGGTATTTAGCGAGGGATTACGAGCAGCCAGGA
GGAGGGAGCGGGGGTTATTATGGCGGAGGCCCTTCGTATGAAGGAGCAGG
AGCAGGAGGAGCACCGCAGCTCTTGCCTGGTGGTGGAGCGTACTCGTCCC
CACAGCAGCAGCAACAGCAGCCGCCGACACAAGGAGGGATATGGGGAGAT
TCTACGAGGGGGTATCCTGGGCCTTATGGTCCGCCGCCCGGGCACCAGCA
GTACCAGCAGCACCAGCAGCAGCAGCCGCAGATGCCTTACCCTTCTTCCC
GTGGCGCCTACCCGCCGCCGGATGAAAGAGAGCGCGAGGAGGATGAGCCA
TCTCAGCATAAGATTGTCAATGAAATGCAAGAGCGTTTCCGCACGCAAGG
TCGATTGGAAGAACGAGGCGGGCCGCCGCCGCCGCCGCTACAAGGGTGGC
AGATGCCCCCGCAGCAACAGCAGCAACAGCAGCACCAGCAGCACCAGCAG
CACCAGCAGCAGAGGCCTGTAGTTCCAGGTGGAAGCGTGCCTACTGCTCC
TGCTGCAGGCACTAACCCGCCAGTGGGAGGTCCTTGGGGATATTCAACCC
AGGGGCCACCTCCATCACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAG
CGACACCCGTCAGAGGGGCCTGCCCGACCGCCGACAACAGTACAGCAGCA
GCAGGGGAGTTACCCAGGAGCAGGAGAGCAACAGCGTTATGGTGCTGGTG
TTGGGGGAGAGGCGGCTTATCCCCAGCACCAGCAGCACCAGCAGCATCAG
CGTCCGGCGCCGCAGCATCAGCAAGTCTACCCCCCTCGACAGCAACCACA
GCAGGAGCAGCAGCAGCAGTACCCGCCATCCCGCCCTTCCTCCCAGCATC
AGCAGCGCTATCAGACCCCTTCGTCAGGGGGGCAGCACGAGAGTGGTAGT
AGCGGTATTTCCGACCAACAGCAGCAGTACCAGCAGCAGCAACAACCGCA
TCCTGAAGAAGAAGGGAGCGAGGGTGGAGGCAGCAATGGCGCTGCTGCTC
CGCCTGACCGAGCAGGTGGAGCAGCAGCAACAGGAGGAGCACCTGCAGGA
GCGTCTGGTGCAGCCGGGGCCGCTGCTCCTAGTGAGGAGGTGAGGGACGT
ATGGGGGCACGAGGAGGATTTCTGACGACTACAGGAGGTGAATTGAGGAG
GAGGGTGGGTGGGATGAAGGGAAAGGGAATGTATGTTTTGTTGCATTCCT
CTCGCTTATTGGTTTAAATGTGTCTATAATCGTTCGTATTCATTGGATAT
TACTCATTCTGTTGGGCAAGTCTTGTCTGTGTACGTACCCACCTACTTTA
TTGCCTGCCTCCCTTCTTCCCTCCCGCCATCCCTCCCTACTGCTTCAGGG
GCAAGCCGGCGGCACAACAC

protein sequence of NO07G03280.1

>NO07G03280.1-protein ID=NO07G03280.1-protein|Name=NO07G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MQALPLLFLALVVAAAVAASSRMWGAPSSSTSAAFHHQRSHRGRLAFDYP
AYESSSSSQHSGGPPSSPPPPPGGPYQSHPHHQHQHQQHQRSPAGAGPGQ
YSPPPLPPHHQQQHQQHPQHQQHQHTQDQWGGYGQQPPPSQQQQGGDLGA
EGGQGQGPYDGGQGGQGGGYGAFYSSQGQHGYGSYYGVQPGGQGGGAAAG
QPEGPSVGAKIKGLWGSLKEKIASGVDSVSKSSTVENGLRYLARDYEQPG
GGSGGYYGGGPSYEGAGAGGAPQLLPGGGAYSSPQQQQQQPPTQGGIWGD
STRGYPGPYGPPPGHQQYQQHQQQQPQMPYPSSRGAYPPPDEREREEDEP
SQHKIVNEMQERFRTQGRLEERGGPPPPPLQGWQMPPQQQQQQQHQQHQQ
HQQQRPVVPGGSVPTAPAAGTNPPVGGPWGYSTQGPPPSQQQQQQQQQQQ
RHPSEGPARPPTTVQQQQGSYPGAGEQQRYGAGVGGEAAYPQHQQHQQHQ
RPAPQHQQVYPPRQQPQQEQQQQYPPSRPSSQHQQRYQTPSSGGQHESGS
SGISDQQQQYQQQQQPHPEEEGSEGGGSNGAAAPPDRAGGAAATGGAPAG
ASGAAGAAAPSEEVRDVWGHEEDF*

mRNA from alignment at chr7:905428..907547-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G03280.1 ID=NO07G03280.1|Name=NO07G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2120bp|location=Sequence derived from alignment at chr7:905428..907547- (Nannochloropsis oceanica)
ATGCAGGCCTTGCCCCTCCTCTTTCTGGCCCTGGTCGTCGCGGCAGCTGT
CGCGGCCTCCAGCCGAATGTGGGGAGCGCCCTCGTCCTCTACCTCTGCAG
CTTTCCACCACCAGCGTTCCCACCGCGGACGACTCGCCTTTGACTACCCA
GCCTACGAATCCTCATCATCGTCACAACATTCCGGTGGTCCTCCTTCATC
TCCTCCCCCTCCTCCTGGTGGTCCTTACCAGTCGCATCCCCATCACCAAC
ACCAACACCAGCAGCACCAAAGGTCGCCTGCGGGGGCAGGGCCAGGACAG
TACTCTCCTCCTCCTCTTCCTCCCCACCATCAGCAACAGCACCAACAGCA
CCCACAGCACCAACAGCATCAACACACACAAGATCAATGGGGTGGTTACG
GCCAGCAGCCGCCTCCTTCCCAACAGCAGCAAGGCGGGGACCTTGGTGCC
GAGGGAGGACAAGGACAGGGGCCGTATGATGGAGGGCAGGGGGGGCAAGG
AGGAGGATATGGAGCATTCTATAGTAGCCAGGGGCAACATGGCTATGGGT
CTTACTACGGCGTGCAGCCTGGGGGGCAGGGAGGAGGGGCAGCAGCAGGG
CAGCCGGAAGGACCGTCCGTGGGTGCCAAGATTAAGGGATTGTGGGGGAG
TTTGAAGGAGAAGATCGCGAGTGGCGTTGATTCAGTCTCCAAGAGCAGTA
CTGTCGAGAATGGCTTGAGGTATTTAGCGAGGGATTACGAGCAGCCAGGA
GGAGGGAGCGGGGGTTATTATGGCGGAGGCCCTTCGTATGAAGGAGCAGG
AGCAGGAGGAGCACCGCAGCTCTTGCCTGGTGGTGGAGCGTACTCGTCCC
CACAGCAGCAGCAACAGCAGCCGCCGACACAAGGAGGGATATGGGGAGAT
TCTACGAGGGGGTATCCTGGGCCTTATGGTCCGCCGCCCGGGCACCAGCA
GTACCAGCAGCACCAGCAGCAGCAGCCGCAGATGCCTTACCCTTCTTCCC
GTGGCGCCTACCCGCCGCCGGATGAAAGAGAGCGCGAGGAGGATGAGCCA
TCTCAGCATAAGATTGTCAATGAAATGCAAGAGCGTTTCCGCACGCAAGG
TCGATTGGAAGAACGAGGCGGGCCGCCGCCGCCGCCGCTACAAGGGTGGC
AGATGCCCCCGCAGCAACAGCAGCAACAGCAGCACCAGCAGCACCAGCAG
CACCAGCAGCAGAGGCCTGTAGTTCCAGGTGGAAGCGTGCCTACTGCTCC
TGCTGCAGGCACTAACCCGCCAGTGGGAGGTCCTTGGGGATATTCAACCC
AGGGGCCACCTCCATCACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAG
CGACACCCGTCAGAGGGGCCTGCCCGACCGCCGACAACAGTACAGCAGCA
GCAGGGGAGTTACCCAGGAGCAGGAGAGCAACAGCGTTATGGTGCTGGTG
TTGGGGGAGAGGCGGCTTATCCCCAGCACCAGCAGCACCAGCAGCATCAG
CGTCCGGCGCCGCAGCATCAGCAAGTCTACCCCCCTCGACAGCAACCACA
GCAGGAGCAGCAGCAGCAGTACCCGCCATCCCGCCCTTCCTCCCAGCATC
AGCAGCGCTATCAGACCCCTTCGTCAGGGGGGCAGCACGAGAGTGGTAGT
AGCGGTATTTCCGACCAACAGCAGCAGTACCAGCAGCAGCAACAACCGCA
TCCTGAAGAAGAAGGGAGCGAGGGTGGAGGCAGCAATGGCGCTGCTGCTC
CGCCTGACCGAGCAGGTGGAGCAGCAGCAACAGGAGGAGCACCTGCAGGA
GCGTCTGGTGCAGCCGGGGCCGCTGCTCCTAGTGAGGAGGTGAGGGACGT
ATGGGGGCACGAGGAGGATTTCTGACGACTACAGGAGGTGAATTGAGGAG
GAGGGTGGGTGGGATGAAGGGAAAGGGAATGTATGTTTTGTTGCATTCCT
CTCGCTTATTGGTTTAAATGTGTCTATAATCGTTCGTATTCATTGGATAT
TACTCATTCTGTTGGGCAAGTCTTGTCTGTGTACGTACCCACCTACTTTA
TTGCCTGCCTCCCTTCTTCCCTCCCGCCATCCCTCCCTACTGCTTCAGGG
GCAAGCCGGCGGCACAACAC

Coding sequence (CDS) from alignment at chr7:905428..907547-

>NO07G03280.1 ID=NO07G03280.1|Name=NO07G03280.1|organism=Nannochloropsis oceanica|type=CDS|length=1875bp|location=Sequence derived from alignment at chr7:905428..907547- (Nannochloropsis oceanica)
ATGCAGGCCTTGCCCCTCCTCTTTCTGGCCCTGGTCGTCGCGGCAGCTGT
CGCGGCCTCCAGCCGAATGTGGGGAGCGCCCTCGTCCTCTACCTCTGCAG
CTTTCCACCACCAGCGTTCCCACCGCGGACGACTCGCCTTTGACTACCCA
GCCTACGAATCCTCATCATCGTCACAACATTCCGGTGGTCCTCCTTCATC
TCCTCCCCCTCCTCCTGGTGGTCCTTACCAGTCGCATCCCCATCACCAAC
ACCAACACCAGCAGCACCAAAGGTCGCCTGCGGGGGCAGGGCCAGGACAG
TACTCTCCTCCTCCTCTTCCTCCCCACCATCAGCAACAGCACCAACAGCA
CCCACAGCACCAACAGCATCAACACACACAAGATCAATGGGGTGGTTACG
GCCAGCAGCCGCCTCCTTCCCAACAGCAGCAAGGCGGGGACCTTGGTGCC
GAGGGAGGACAAGGACAGGGGCCGTATGATGGAGGGCAGGGGGGGCAAGG
AGGAGGATATGGAGCATTCTATAGTAGCCAGGGGCAACATGGCTATGGGT
CTTACTACGGCGTGCAGCCTGGGGGGCAGGGAGGAGGGGCAGCAGCAGGG
CAGCCGGAAGGACCGTCCGTGGGTGCCAAGATTAAGGGATTGTGGGGGAG
TTTGAAGGAGAAGATCGCGAGTGGCGTTGATTCAGTCTCCAAGAGCAGTA
CTGTCGAGAATGGCTTGAGGTATTTAGCGAGGGATTACGAGCAGCCAGGA
GGAGGGAGCGGGGGTTATTATGGCGGAGGCCCTTCGTATGAAGGAGCAGG
AGCAGGAGGAGCACCGCAGCTCTTGCCTGGTGGTGGAGCGTACTCGTCCC
CACAGCAGCAGCAACAGCAGCCGCCGACACAAGGAGGGATATGGGGAGAT
TCTACGAGGGGGTATCCTGGGCCTTATGGTCCGCCGCCCGGGCACCAGCA
GTACCAGCAGCACCAGCAGCAGCAGCCGCAGATGCCTTACCCTTCTTCCC
GTGGCGCCTACCCGCCGCCGGATGAAAGAGAGCGCGAGGAGGATGAGCCA
TCTCAGCATAAGATTGTCAATGAAATGCAAGAGCGTTTCCGCACGCAAGG
TCGATTGGAAGAACGAGGCGGGCCGCCGCCGCCGCCGCTACAAGGGTGGC
AGATGCCCCCGCAGCAACAGCAGCAACAGCAGCACCAGCAGCACCAGCAG
CACCAGCAGCAGAGGCCTGTAGTTCCAGGTGGAAGCGTGCCTACTGCTCC
TGCTGCAGGCACTAACCCGCCAGTGGGAGGTCCTTGGGGATATTCAACCC
AGGGGCCACCTCCATCACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAG
CGACACCCGTCAGAGGGGCCTGCCCGACCGCCGACAACAGTACAGCAGCA
GCAGGGGAGTTACCCAGGAGCAGGAGAGCAACAGCGTTATGGTGCTGGTG
TTGGGGGAGAGGCGGCTTATCCCCAGCACCAGCAGCACCAGCAGCATCAG
CGTCCGGCGCCGCAGCATCAGCAAGTCTACCCCCCTCGACAGCAACCACA
GCAGGAGCAGCAGCAGCAGTACCCGCCATCCCGCCCTTCCTCCCAGCATC
AGCAGCGCTATCAGACCCCTTCGTCAGGGGGGCAGCACGAGAGTGGTAGT
AGCGGTATTTCCGACCAACAGCAGCAGTACCAGCAGCAGCAACAACCGCA
TCCTGAAGAAGAAGGGAGCGAGGGTGGAGGCAGCAATGGCGCTGCTGCTC
CGCCTGACCGAGCAGGTGGAGCAGCAGCAACAGGAGGAGCACCTGCAGGA
GCGTCTGGTGCAGCCGGGGCCGCTGCTCCTAGTGAGGAGGTGAGGGACGT
ATGGGGGCACGAGGAGGATTTCTGA

Synonyms

Publications