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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr7 | genome | chr7:898277..901037 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03250.2 vs.
Match: EWM27055.1 (hypothetical protein Naga_100056g22 [Nannochloropsis gaditana]) HSP 1 Score: 311.2 bits (796), Expect = 4.800e-81 Identity = 218/455 (47.91%), Postives = 260/455 (57.14%), Query Frame = 0
Query: 3 CGSFTVEQETPVATHHHSQQSSLNATGFAPKQQQMQQQTPQAPQRRPSSSVGHLQALRNASSSKKNAYPLTPVPSPCARF-QHQNHHQQPMQDENASPVEHGSGSSMPCSNISSSHHAGGSTTSNSGAKKVFAPRINVRLMPQNSATAARVRQAGYNPKLELSTPLGKRVGFFIDHLASKWSDVPGIASLSLRLAVSPTQQLEEHVALRSLSAYFAAAKMVDAA-----TGAGGAT---PSAVLQLHYVLRQDM---------------MNEWHPEENSLFDAFAASGLDQLPSS-APTAPSIYVTRTAVDTLVYRPQQQEQDQQKKRRKRVSLTTGDAFNRNETFVNAATLVISTPAPIK-----------PSPFSSSSSSFESSGDSSVTQAGHP---GSGKKRRRIRPTLLPPGEVVATSPSFLQAQCGIGSLTSESSRQSSFSNSGDDSQQ 419
CG QETP A HH + A + +Q P R+ +Q + N + TP P P + QHQ + DENA P+E G+ + + H+ ++ S KK APR+NVRL+PQNS TAARVR AGYNPKLELSTPL KRVGFF+ HLA KWS+V GI SLSLRL VSP +QLEEHV+LRSL +YF A + A TGAG T PSA+LQLHY+L +DM + W PEENSLFDAFAA+GLDQLP + P V + Q ++ KKRRKR SLT+G A NRN+TFVNAAT+ I TPAP+K + SSSS S +SS D S + G G KKRRRIRPTLL G+ V+TSPSF A CGIGS TSESSRQS FSNSGDDS Q
Sbjct: 47 CGKTATVQETPDAAHHQVEPVMT-----AGRAIFGEQDPSSVPLRKAHFGTAGVQLVNQGV----NLHQTTPSPRPFHPYLQHQ------IFDENAQPIERGASTV--------TRHSPSASHPGSSLKKAAAPRVNVRLVPQNSRTAARVRNAGYNPKLELSTPLSKRVGFFLGHLAKKWSNVSGINSLSLRLVVSPARQLEEHVSLRSLESYFTTATKMAAGPSPTPTGAGAVTPSSPSAILQLHYLLVEDMECDHNPAASHTTPARESPWGPEENSLFDAFAATGLDQLPCAILSDLPHSLPPSNVPPISVQQVDVQPVEEPKKRRKRASLTSGVASNRNDTFVNAATVEICTPAPVKQRATSFCSSVSTATSSSSSPSIDSSADRSRSVVGPKPALGQEKKRRRIRPTLLSAGQAVSTSPSFTMAHCGIGSFTSESSRQSCFSNSGDDSGQ 478
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03250.2 ID=NO07G03250.2|Name=NO07G03250.2|organism=Nannochloropsis oceanica|type=mRNA|length=2570bp
AAAAAGGTAAGCAAGCAAAGTACTGCTATTCGTCGACGCGCGCGCCTCTC
TCGTGGGATTTACTTCCCTCCCTTGTCATTTTCTTTGCTCCACACGCTCA
GTGATGCAAGATCTCCTCCTTTAATGAAGGACGCAGCAATGCGTTTCCGC
ATACCGTGTTCTAAGCACGATGCCTCGCGTCCAACTCCCTGATTCGACTT
CCCTCCCTGCCCGACGACCGTCAAAATCATCCCCACAACCCACAGCTCGT
CAAGCACTTTAGCGCGATTCCCATGACCACATTTGAACGCAGTACGTCTT
GGAACTCGACGAAAGACGACGCTTTTGGCTTGGAATTCGAATTCGGTGAC
CTGCTGGTGGATACGGACCACTCCCACTCGTTGATGGAAGTGACGGCCAT
GGTGAGTGCGGGCACGGGTTCAGGAGGAGTTGAGAATTGCAAGTATGACG
CGCAAGGGTATACGCAACCAATTGGGAATGCTGCGACACCAAACCTTACA
CTGGAATCATGTTGCTAACATTGTCTCTTTGCGGGACTTGAGCCCACACT
CTCAGTTGAGCGGCGAGCACGTGGCGGGAAAATAGAACCCACTTTGGAAG
ATTTCTTCCCTTATTCATTCATCTGTCCGCTCACCTATGTGACACGAAAC
TCTCCTATCTACCCACAACCACAGCTTGAGCAGGTCGACGGCATGCCCTG
TGGATCCTTCACCGTGGAGCAAGAAACACCGGTGGCAACGCACCATCACT
CCCAACAATCTAGCTTGAACGCCACTGGCTTCGCCCCCAAGCAGCAGCAA
ATGCAGCAACAAACACCACAAGCCCCACAACGGAGACCAAGCAGCAGCGT
AGGTCACCTGCAGGCGTTGAGGAATGCCTCCTCCTCCAAGAAAAACGCCT
ACCCTCTCACTCCCGTGCCTTCTCCTTGCGCGCGATTCCAGCATCAAAAT
CACCACCAACAACCCATGCAGGACGAGAATGCCTCTCCGGTTGAGCATGG
CAGCGGAAGCAGCATGCCATGCAGCAACATTTCCTCGTCTCATCATGCGG
GAGGTAGCACCACCAGCAACAGCGGTGCGAAGAAGGTTTTCGCCCCGCGG
ATCAACGTCCGTCTCATGCCCCAAAACTCCGCGACTGCCGCACGGGTCCG
GCAAGCCGGGTACAACCCCAAGCTAGAGCTTTCTACGCCCTTGGGCAAGC
GCGTAGGTTTTTTCATCGACCATTTGGCCTCGAAATGGTCCGACGTCCCG
GGCATCGCCTCCCTGTCGTTGCGTTTAGCCGTCTCCCCCACCCAACAGCT
GGAGGAGCACGTGGCCTTGCGTTCTTTGAGCGCATACTTTGCCGCGGCTA
AGATGGTGGATGCTGCCACGGGTGCGGGTGGGGCGACGCCGTCGGCGGTG
CTACAGTTGCACTATGTGCTGCGGCAGGATATGATGAATGAGTGGCACCC
TGAGGAGAATTCGCTTTTTGACGCCTTCGCTGCCTCAGGTCTGGACCAGC
TGCCGAGCTCTGCTCCTACCGCCCCCTCAATCTATGTCACTAGGACCGCC
GTCGATACTCTGGTTTATCGACCGCAACAGCAAGAGCAAGATCAGCAGAA
GAAGCGGCGCAAGCGCGTGTCGCTCACCACGGGAGATGCCTTCAATCGGA
ACGAGACCTTTGTCAACGCGGCCACGCTTGTCATCTCCACACCGGCTCCC
ATCAAGCCCAGCCCTTTCTCCTCCTCCTCCTCCTCCTTTGAGTCGTCGGG
CGACAGCAGCGTAACGCAAGCCGGGCACCCGGGGTCAGGAAAAAAGCGCC
GCCGCATCCGCCCAACGCTGCTGCCGCCGGGAGAAGTGGTGGCTACAAGT
CCTAGCTTTTTGCAGGCACAGTGTGGGATTGGGAGCCTCACCTCCGAGTC
ATCTCGTCAGTCATCGTTTTCCAATTCGGGAGATGACTCGCAGCAATAGA
GAGCGGAAGGAAGAGGAGAGGAGGGTTGAGGAGGGGAGCGAGTCATGATT
TTTTGTGCTAAATCATGGTCACGAGAATCAGCACTTGTTTTAAAAGAAAG
GTGACAGGGGGAAGCGGATTAGGAAGAAGAAGAGGATTTGATTTGTGCAG
GCACAAATCTGGCAATCAAGCAAGAATAAAACTGAAGCGCACGCTAAAAG
AAAGATGTGTGTGCTGCTGTGTATGAATGTATCATGAGAGATTTCAAAAC
AATGTGATAAGATAAGAGATTGCGTGTACACCAACACGCACACACACACA
CACACGGATACATATAAACCAACCCACTCCCACATACGATGAGAGAAGGA
GAATGGAGAGATAGAGAGATAAATGACTTATTCATCCGTAGAGAGGAACA
GAATATAAATGAAAGTACCAGCACCCTTCATATGTCTTTTGAAACCAATA
GTCAGTCATTCATGTCATTTCTGCATCGTCATTGTCATACAATAGTGCTC
ACATCCCCGTCATCTCATCATCGGCAGCGATACCAAAAACAATAAAGCAC
GCATCATGAGCACCCGCACACATTGATATAGAAGAAGGGTAAAACGAAAG
CGGAAGGCGCTGCGTTTGAT back to topprotein sequence of NO07G03250.2 >NO07G03250.2-protein ID=NO07G03250.2-protein|Name=NO07G03250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MPCGSFTVEQETPVATHHHSQQSSLNATGFAPKQQQMQQQTPQAPQRRPS
SSVGHLQALRNASSSKKNAYPLTPVPSPCARFQHQNHHQQPMQDENASPV
EHGSGSSMPCSNISSSHHAGGSTTSNSGAKKVFAPRINVRLMPQNSATAA
RVRQAGYNPKLELSTPLGKRVGFFIDHLASKWSDVPGIASLSLRLAVSPT
QQLEEHVALRSLSAYFAAAKMVDAATGAGGATPSAVLQLHYVLRQDMMNE
WHPEENSLFDAFAASGLDQLPSSAPTAPSIYVTRTAVDTLVYRPQQQEQD
QQKKRRKRVSLTTGDAFNRNETFVNAATLVISTPAPIKPSPFSSSSSSFE
SSGDSSVTQAGHPGSGKKRRRIRPTLLPPGEVVATSPSFLQAQCGIGSLT
SESSRQSSFSNSGDDSQQ* back to topmRNA from alignment at chr7:898277..901037- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03250.2 ID=NO07G03250.2|Name=NO07G03250.2|organism=Nannochloropsis oceanica|type=mRNA|length=2761bp|location=Sequence derived from alignment at chr7:898277..901037- (Nannochloropsis oceanica)
AAAAAGGTAAGCAAGCAAAGTACTGCTATTCGTCGACGCGCGCGCCTCTC
TCGTGGGATTTACTTCCCTCCCTTGTCATTTTCTTTGCTCCACACGCTCA
GTGATGCAAGATCTCCTCCTTTAATGAAGGACGCAGCAATGCGTTTCCGC
ATACCGTGTTCTAAGCACGATGCCTCGCGTCCAACTCCCTGATTCGACTT
CCCTCCCTGCCCGACGACCGTCAAAATCATCCCCACAACCCACAGCTCGT
CAAGCACTTTAGCGCGATTCCCATGACCACATTTGAACGCAGTACGTCTT
GGAACTCGACGAAAGGTACGTGTGTTCCCCATGCATGAGTTGACGTGGCA
TTGTCTCACCTCTTTTTACCGACAGCATTGCCACCTAAGGTCTTTTCCCT
CCCGTTTTCCGTGTGTTCCGACTGCCCTTCTGTTCGCCACGCCACACCCA
GGTTTTCCGCGCCTTTGGCTCACCTTCCCAACAACCGTACCCACCCAACA
ACACAGACGACGCTTTTGGCTTGGAATTCGAATTCGGTGACCTGCTGGTG
GATACGGACCACTCCCACTCGTTGATGGAAGTGACGGCCATGGTGAGTGC
GGGCACGGGTTCAGGAGGAGTTGAGAATTGCAAGTATGACGCGCAAGGGT
ATACGCAACCAATTGGGAATGCTGCGACACCAAACCTTACACTGGAATCA
TGTTGCTAACATTGTCTCTTTGCGGGACTTGAGCCCACACTCTCAGTTGA
GCGGCGAGCACGTGGCGGGAAAATAGAACCCACTTTGGAAGATTTCTTCC
CTTATTCATTCATCTGTCCGCTCACCTATGTGACACGAAACTCTCCTATC
TACCCACAACCACAGCTTGAGCAGGTCGACGGCATGCCCTGTGGATCCTT
CACCGTGGAGCAAGAAACACCGGTGGCAACGCACCATCACTCCCAACAAT
CTAGCTTGAACGCCACTGGCTTCGCCCCCAAGCAGCAGCAAATGCAGCAA
CAAACACCACAAGCCCCACAACGGAGACCAAGCAGCAGCGTAGGTCACCT
GCAGGCGTTGAGGAATGCCTCCTCCTCCAAGAAAAACGCCTACCCTCTCA
CTCCCGTGCCTTCTCCTTGCGCGCGATTCCAGCATCAAAATCACCACCAA
CAACCCATGCAGGACGAGAATGCCTCTCCGGTTGAGCATGGCAGCGGAAG
CAGCATGCCATGCAGCAACATTTCCTCGTCTCATCATGCGGGAGGTAGCA
CCACCAGCAACAGCGGTGCGAAGAAGGTTTTCGCCCCGCGGATCAACGTC
CGTCTCATGCCCCAAAACTCCGCGACTGCCGCACGGGTCCGGCAAGCCGG
GTACAACCCCAAGCTAGAGCTTTCTACGCCCTTGGGCAAGCGCGTAGGTT
TTTTCATCGACCATTTGGCCTCGAAATGGTCCGACGTCCCGGGCATCGCC
TCCCTGTCGTTGCGTTTAGCCGTCTCCCCCACCCAACAGCTGGAGGAGCA
CGTGGCCTTGCGTTCTTTGAGCGCATACTTTGCCGCGGCTAAGATGGTGG
ATGCTGCCACGGGTGCGGGTGGGGCGACGCCGTCGGCGGTGCTACAGTTG
CACTATGTGCTGCGGCAGGATATGATGAATGAGTGGCACCCTGAGGAGAA
TTCGCTTTTTGACGCCTTCGCTGCCTCAGGTCTGGACCAGCTGCCGAGCT
CTGCTCCTACCGCCCCCTCAATCTATGTCACTAGGACCGCCGTCGATACT
CTGGTTTATCGACCGCAACAGCAAGAGCAAGATCAGCAGAAGAAGCGGCG
CAAGCGCGTGTCGCTCACCACGGGAGATGCCTTCAATCGGAACGAGACCT
TTGTCAACGCGGCCACGCTTGTCATCTCCACACCGGCTCCCATCAAGCCC
AGCCCTTTCTCCTCCTCCTCCTCCTCCTTTGAGTCGTCGGGCGACAGCAG
CGTAACGCAAGCCGGGCACCCGGGGTCAGGAAAAAAGCGCCGCCGCATCC
GCCCAACGCTGCTGCCGCCGGGAGAAGTGGTGGCTACAAGTCCTAGCTTT
TTGCAGGCACAGTGTGGGATTGGGAGCCTCACCTCCGAGTCATCTCGTCA
GTCATCGTTTTCCAATTCGGGAGATGACTCGCAGCAATAGAGAGCGGAAG
GAAGAGGAGAGGAGGGTTGAGGAGGGGAGCGAGTCATGATTTTTTGTGCT
AAATCATGGTCACGAGAATCAGCACTTGTTTTAAAAGAAAGGTGACAGGG
GGAAGCGGATTAGGAAGAAGAAGAGGATTTGATTTGTGCAGGCACAAATC
TGGCAATCAAGCAAGAATAAAACTGAAGCGCACGCTAAAAGAAAGATGTG
TGTGCTGCTGTGTATGAATGTATCATGAGAGATTTCAAAACAATGTGATA
AGATAAGAGATTGCGTGTACACCAACACGCACACACACACACACACGGAT
ACATATAAACCAACCCACTCCCACATACGATGAGAGAAGGAGAATGGAGA
GATAGAGAGATAAATGACTTATTCATCCGTAGAGAGGAACAGAATATAAA
TGAAAGTACCAGCACCCTTCATATGTCTTTTGAAACCAATAGTCAGTCAT
TCATGTCATTTCTGCATCGTCATTGTCATACAATAGTGCTCACATCCCCG
TCATCTCATCATCGGCAGCGATACCAAAAACAATAAAGCACGCATCATGA
GCACCCGCACACATTGATATAGAAGAAGGGTAAAACGAAAGCGGAAGGCG
CTGCGTTTGAT back to topCoding sequence (CDS) from alignment at chr7:898277..901037- >NO07G03250.2 ID=NO07G03250.2|Name=NO07G03250.2|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at chr7:898277..901037- (Nannochloropsis oceanica)
ATGCCCTGTGGATCCTTCACCGTGGAGCAAGAAACACCGGTGGCAACGCA
CCATCACTCCCAACAATCTAGCTTGAACGCCACTGGCTTCGCCCCCAAGC
AGCAGCAAATGCAGCAACAAACACCACAAGCCCCACAACGGAGACCAAGC
AGCAGCGTAGGTCACCTGCAGGCGTTGAGGAATGCCTCCTCCTCCAAGAA
AAACGCCTACCCTCTCACTCCCGTGCCTTCTCCTTGCGCGCGATTCCAGC
ATCAAAATCACCACCAACAACCCATGCAGGACGAGAATGCCTCTCCGGTT
GAGCATGGCAGCGGAAGCAGCATGCCATGCAGCAACATTTCCTCGTCTCA
TCATGCGGGAGGTAGCACCACCAGCAACAGCGGTGCGAAGAAGGTTTTCG
CCCCGCGGATCAACGTCCGTCTCATGCCCCAAAACTCCGCGACTGCCGCA
CGGGTCCGGCAAGCCGGGTACAACCCCAAGCTAGAGCTTTCTACGCCCTT
GGGCAAGCGCGTAGGTTTTTTCATCGACCATTTGGCCTCGAAATGGTCCG
ACGTCCCGGGCATCGCCTCCCTGTCGTTGCGTTTAGCCGTCTCCCCCACC
CAACAGCTGGAGGAGCACGTGGCCTTGCGTTCTTTGAGCGCATACTTTGC
CGCGGCTAAGATGGTGGATGCTGCCACGGGTGCGGGTGGGGCGACGCCGT
CGGCGGTGCTACAGTTGCACTATGTGCTGCGGCAGGATATGATGAATGAG
TGGCACCCTGAGGAGAATTCGCTTTTTGACGCCTTCGCTGCCTCAGGTCT
GGACCAGCTGCCGAGCTCTGCTCCTACCGCCCCCTCAATCTATGTCACTA
GGACCGCCGTCGATACTCTGGTTTATCGACCGCAACAGCAAGAGCAAGAT
CAGCAGAAGAAGCGGCGCAAGCGCGTGTCGCTCACCACGGGAGATGCCTT
CAATCGGAACGAGACCTTTGTCAACGCGGCCACGCTTGTCATCTCCACAC
CGGCTCCCATCAAGCCCAGCCCTTTCTCCTCCTCCTCCTCCTCCTTTGAG
TCGTCGGGCGACAGCAGCGTAACGCAAGCCGGGCACCCGGGGTCAGGAAA
AAAGCGCCGCCGCATCCGCCCAACGCTGCTGCCGCCGGGAGAAGTGGTGG
CTACAAGTCCTAGCTTTTTGCAGGCACAGTGTGGGATTGGGAGCCTCACC
TCCGAGTCATCTCGTCAGTCATCGTTTTCCAATTCGGGAGATGACTCGCA
GCAATAG back to top
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