NO07G03240.1, NO07G03240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03240.1
Unique NameNO07G03240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1902
Alignment locationchr7:895387..897593 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:895387..897593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03240.1 vs.
Match: EWM27067.1 (cysteine subfamily [Nannochloropsis gaditana])

HSP 1 Score: 724.5 bits (1869), Expect = 2.300e-205
Identity = 365/462 (79.00%), Postives = 405/462 (87.66%), Query Frame = 0 
Query:   75 ETSTTTLLSTSTSTTATRSSSSSSSSSSSGSSSSSSITLPTSTLGDNLKADFPALHQDAYPGKPLVYLDSAATSQKPKQVLNAMSEYYEHSNANVHRGAHALSIRATEAYEATRDKVQNFIHASTREEIVFTRGATEAINLVANTWGIQNLKAGDEILLTVMEHHSNLVPWQLIAKKTGAVIKFVGLDEEEGLDLPQFHSLLSSKTKLVAFPHVSNTLGCILPVAEMAAAAHAVGALVLVDACQSIPHMKVDVQALDVDFLAASSHKMCGPTGAGFLYGKLGVLKQMPPWHGGGEMIDEVFFEYSTFAEPPARFEAGTPPIAEVVGMGAACDYLMEVGMEKVEEHEHQLGKYLYERLSEVEGVRIYGPPPGKEGKGRAALASFNTDQVHASDLAFFLDHEGVAIRSGHHCTQPLHRMLHAKGSLRASLYVYNTKGDIDVFIARLKETMEFFGNFQSGGAGAA 537
            +T +  +LS   ST        SS ++++ ++S S++  P+STLG  LK+DFP L QDAYPGKPLVYLDSAATSQKP+QVL AM+ YYE SNANVHRG HALSIRAT+AYEA RDKVQ+F+HA  REEIVFTRGATEAINLVA TWG+QNLK GDEILLTVMEHHSNLVPWQL+A KTGAV+KFVGL++ EGLD+ QF++LLS KTKLVAFPHVSNTLGCILP  +MAAAAH VGA+VLVDACQS+PHMKVDVQ LDVDFLAASSHKMCGPTGAGFLYGKL +LK+MPPW GGGEMIDEVF EYST+A PPARFEAGTPPIAEVVGMGAACDYL +VGME VE HE  LGKYLYE+L EVEG+RIYGPPPG+ GKGRAALA+FNTDQVHASDLAFFLDHEGVAIRSGHHCTQPLHRMLHAKGSLRASLYVYNTK D+DVFIA+L+ETM FFGNFQ  G G A
Sbjct:    4 DTPSRLILSLFASTVL-----ESSMAATATAASISTMPFPSSTLGYELKSDFPTLDQDAYPGKPLVYLDSAATSQKPRQVLEAMAAYYEQSNANVHRGVHALSIRATDAYEAARDKVQHFVHAGAREEIVFTRGATEAINLVAYTWGLQNLKEGDEILLTVMEHHSNLVPWQLVAAKTGAVLKFVGLNDAEGLDMDQFYALLSPKTKLVAFPHVSNTLGCILPAKDMAAAAHRVGAVVLVDACQSVPHMKVDVQDLDVDFLAASSHKMCGPTGAGFLYGKLALLKEMPPWQGGGEMIDEVFLEYSTYAGPPARFEAGTPPIAEVVGMGAACDYLTKVGMEAVEAHEQALGKYLYEKLDEVEGLRIYGPPPGENGKGRAALAAFNTDQVHASDLAFFLDHEGVAIRSGHHCTQPLHRMLHAKGSLRASLYVYNTKEDVDVFIAKLRETMHFFGNFQGSGGGNA 460
The following BLAST results are available for this feature:
BLAST of NO07G03240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27067.12.300e-20579.00cysteine subfamily [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03240NO07G03240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03240.1NO07G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03240.1.cds1NO07G03240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03240.1.cds2NO07G03240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03240.1 ID=NO07G03240.1|Name=NO07G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp
AATCACAGGCCAACGCAGATCGGCTTTTCCCCTGCTCTTCAGAAATGCGG
AGGATATTTTCATCGAACGGCCGTAGCTGCACCGCAGCGCGTTTGCTGTT
GCTGTCGCTTCTGGCCGTGGAGTTGACGCATGCCTTTGTGGGTAAGGTTT
CCTTGGGCGAGGGCGACATTGGCAGCAGCCGGAGCAGCAGCTATGCCGGC
AGAAGACAGGAAACATGGCGCAATGCGCCCTTGTCCGCGGCGGCTGCGGC
TGCCACCTCAGCCCGAGAAACCAGCACAACAACCCTCCTCAGCACCAGCA
CCAGCACCACCGCCACCAGAAGTAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCGGCAGCAGCAGCAGCAGCAGCATCACACTGCCTACTTCTACCCTCGG
CGATAATCTTAAAGCTGATTTTCCTGCGTTGCATCAGGATGCCTACCCAG
GCAAACCCCTCGTCTATCTCGACTCGGCCGCCACCTCCCAAAAACCCAAA
CAGGTGCTGAATGCCATGTCCGAATATTATGAACACAGCAACGCCAATGT
CCATCGCGGTGCCCACGCCCTTTCCATCCGCGCAACAGAAGCTTACGAAG
CCACAAGGGACAAGGTCCAAAACTTCATTCACGCCAGCACACGCGAAGAG
ATCGTCTTTACGCGCGGCGCGACTGAGGCCATTAACCTTGTGGCCAACAC
TTGGGGAATCCAGAATTTGAAAGCAGGAGATGAAATTTTATTGACAGTGA
TGGAGCACCATTCTAACCTGGTACCCTGGCAGTTGATCGCCAAAAAGACG
GGGGCTGTGATAAAGTTTGTGGGTTTGGATGAGGAGGAGGGATTGGACCT
GCCTCAATTTCACTCCTTGCTTTCAAGCAAGACCAAGCTGGTTGCCTTCC
CTCACGTTAGTAACACGCTCGGATGTATCTTGCCAGTGGCAGAGATGGCG
GCTGCTGCACATGCTGTAGGTGCTCTTGTCCTGGTGGATGCCTGCCAGAG
CATTCCCCATATGAAGGTAGATGTGCAGGCGCTCGATGTCGATTTTCTTG
CAGCGAGCAGCCACAAGATGTGTGGCCCGACAGGGGCGGGATTCTTGTAC
GGGAAATTGGGAGTGTTGAAGCAGATGCCACCGTGGCATGGGGGGGGAGA
AATGATTGATGAAGTCTTCTTCGAGTACTCGACCTTTGCAGAGCCTCCGG
CGAGATTCGAGGCGGGCACTCCCCCAATTGCCGAGGTCGTGGGTATGGGG
GCGGCGTGTGATTACTTGATGGAAGTGGGGATGGAAAAGGTGGAGGAGCA
TGAGCATCAATTGGGAAAGTATTTGTATGAGCGGTTGAGTGAAGTGGAAG
GGGTGAGAATATATGGTCCGCCGCCGGGTAAGGAGGGGAAGGGAAGGGCG
GCGTTGGCCTCGTTTAATACGGACCAGGTGCATGCGAGTGATTTGGCGTT
TTTCTTGGACCACGAGGGAGTGGCAATTCGTTCGGGCCATCACTGCACGC
AGCCTCTGCATCGGATGCTGCACGCCAAAGGCAGCCTGAGGGCGAGCCTT
TATGTGTACAATACGAAGGGGGATATCGATGTTTTTATCGCCAGATTGAA
GGAGACAATGGAGTTTTTTGGAAACTTTCAGAGTGGAGGGGCGGGGGCAG
CGACGATTTTGTAGGTTGTAGAAGAAACAAAGATGGGGAGGAGTCTTGAG
ATGCGGCAGAGAAATGTGATGAAATGATCAAGAACTATGAGAGGTGAAGA
AGTAGTAGTATGAGATTGATCGATCGATGATGAATGGGCAGCAAGAGCAA
GAGGAGAGTACCGCTAGGTCGCACAAGGAAGAAAAGAAAAGAAATCACGC
CAACGAGTGCCGTTATCAGGCGAGTAAGCGAGCGGGGACATGTGCATGCG
AA
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protein sequence of NO07G03240.1

>NO07G03240.1-protein ID=NO07G03240.1-protein|Name=NO07G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MRRIFSSNGRSCTAARLLLLSLLAVELTHAFVGKVSLGEGDIGSSRSSSY
AGRRQETWRNAPLSAAAAAATSARETSTTTLLSTSTSTTATRSSSSSSSS
SSSGSSSSSSITLPTSTLGDNLKADFPALHQDAYPGKPLVYLDSAATSQK
PKQVLNAMSEYYEHSNANVHRGAHALSIRATEAYEATRDKVQNFIHASTR
EEIVFTRGATEAINLVANTWGIQNLKAGDEILLTVMEHHSNLVPWQLIAK
KTGAVIKFVGLDEEEGLDLPQFHSLLSSKTKLVAFPHVSNTLGCILPVAE
MAAAAHAVGALVLVDACQSIPHMKVDVQALDVDFLAASSHKMCGPTGAGF
LYGKLGVLKQMPPWHGGGEMIDEVFFEYSTFAEPPARFEAGTPPIAEVVG
MGAACDYLMEVGMEKVEEHEHQLGKYLYERLSEVEGVRIYGPPPGKEGKG
RAALASFNTDQVHASDLAFFLDHEGVAIRSGHHCTQPLHRMLHAKGSLRA
SLYVYNTKGDIDVFIARLKETMEFFGNFQSGGAGAATIL*
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mRNA from alignment at chr7:895387..897593-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03240.1 ID=NO07G03240.1|Name=NO07G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2207bp|location=Sequence derived from alignment at chr7:895387..897593- (Nannochloropsis oceanica)
AATCACAGGCCAACGCAGATCGGCTTTTCCCCTGCTCTTCAGAAATGCGG
AGGATATTTTCATCGAACGGCCGTAGCTGCACCGCAGCGCGTTTGCTGTT
GCTGTCGCTTCTGGCCGTGGAGTTGACGCATGCCTTTGTGGGTAAGGTTT
CCTTGGGCGAGGGCGACATTGGCAGCAGCCGGAGCAGCAGCTATGCCGGC
AGAAGACAGGAAACATGGCGCAATGCGCCCTTGTCCGCGGCGGCTGCGGC
TGCCACCTCAGGTAAGGGAGGGCGATCCTCTTCTATGTTTGTGGGCAGGG
AGTGTGTGTCGAGTGCACGTAATCCTCCGCATATTAGTGATGTAGTCGAT
TAGGCCTTGCTGTGTGGGAAGAATACCGCTGTTCGATCGGTGTTGCCCTG
GTTGTACTCGATTGTGTCTTTCTCCAACAGACAATTTCTTTCAGTGTAAA
CTAGGAATGCATATTCTTGTACACGAGAGCATTAAGTGCATAGTTTTTTC
TTAAAAACTTGTTTCGCAATCATCTCTCTCTGCCCCTCCTTGACTGTTCC
TCTCTCCCCCTAACAGCCCGAGAAACCAGCACAACAACCCTCCTCAGCAC
CAGCACCAGCACCACCGCCACCAGAAGTAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCGGCAGCAGCAGCAGCAGCAGCATCACACTGCCTACTTCTACC
CTCGGCGATAATCTTAAAGCTGATTTTCCTGCGTTGCATCAGGATGCCTA
CCCAGGCAAACCCCTCGTCTATCTCGACTCGGCCGCCACCTCCCAAAAAC
CCAAACAGGTGCTGAATGCCATGTCCGAATATTATGAACACAGCAACGCC
AATGTCCATCGCGGTGCCCACGCCCTTTCCATCCGCGCAACAGAAGCTTA
CGAAGCCACAAGGGACAAGGTCCAAAACTTCATTCACGCCAGCACACGCG
AAGAGATCGTCTTTACGCGCGGCGCGACTGAGGCCATTAACCTTGTGGCC
AACACTTGGGGAATCCAGAATTTGAAAGCAGGAGATGAAATTTTATTGAC
AGTGATGGAGCACCATTCTAACCTGGTACCCTGGCAGTTGATCGCCAAAA
AGACGGGGGCTGTGATAAAGTTTGTGGGTTTGGATGAGGAGGAGGGATTG
GACCTGCCTCAATTTCACTCCTTGCTTTCAAGCAAGACCAAGCTGGTTGC
CTTCCCTCACGTTAGTAACACGCTCGGATGTATCTTGCCAGTGGCAGAGA
TGGCGGCTGCTGCACATGCTGTAGGTGCTCTTGTCCTGGTGGATGCCTGC
CAGAGCATTCCCCATATGAAGGTAGATGTGCAGGCGCTCGATGTCGATTT
TCTTGCAGCGAGCAGCCACAAGATGTGTGGCCCGACAGGGGCGGGATTCT
TGTACGGGAAATTGGGAGTGTTGAAGCAGATGCCACCGTGGCATGGGGGG
GGAGAAATGATTGATGAAGTCTTCTTCGAGTACTCGACCTTTGCAGAGCC
TCCGGCGAGATTCGAGGCGGGCACTCCCCCAATTGCCGAGGTCGTGGGTA
TGGGGGCGGCGTGTGATTACTTGATGGAAGTGGGGATGGAAAAGGTGGAG
GAGCATGAGCATCAATTGGGAAAGTATTTGTATGAGCGGTTGAGTGAAGT
GGAAGGGGTGAGAATATATGGTCCGCCGCCGGGTAAGGAGGGGAAGGGAA
GGGCGGCGTTGGCCTCGTTTAATACGGACCAGGTGCATGCGAGTGATTTG
GCGTTTTTCTTGGACCACGAGGGAGTGGCAATTCGTTCGGGCCATCACTG
CACGCAGCCTCTGCATCGGATGCTGCACGCCAAAGGCAGCCTGAGGGCGA
GCCTTTATGTGTACAATACGAAGGGGGATATCGATGTTTTTATCGCCAGA
TTGAAGGAGACAATGGAGTTTTTTGGAAACTTTCAGAGTGGAGGGGCGGG
GGCAGCGACGATTTTGTAGGTTGTAGAAGAAACAAAGATGGGGAGGAGTC
TTGAGATGCGGCAGAGAAATGTGATGAAATGATCAAGAACTATGAGAGGT
GAAGAAGTAGTAGTATGAGATTGATCGATCGATGATGAATGGGCAGCAAG
AGCAAGAGGAGAGTACCGCTAGGTCGCACAAGGAAGAAAAGAAAAGAAAT
CACGCCAACGAGTGCCGTTATCAGGCGAGTAAGCGAGCGGGGACATGTGC
ATGCGAA
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Coding sequence (CDS) from alignment at chr7:895387..897593-

>NO07G03240.1 ID=NO07G03240.1|Name=NO07G03240.1|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at chr7:895387..897593- (Nannochloropsis oceanica)
ATGCGGAGGATATTTTCATCGAACGGCCGTAGCTGCACCGCAGCGCGTTT
GCTGTTGCTGTCGCTTCTGGCCGTGGAGTTGACGCATGCCTTTGTGGGTA
AGGTTTCCTTGGGCGAGGGCGACATTGGCAGCAGCCGGAGCAGCAGCTAT
GCCGGCAGAAGACAGGAAACATGGCGCAATGCGCCCTTGTCCGCGGCGGC
TGCGGCTGCCACCTCAGCCCGAGAAACCAGCACAACAACCCTCCTCAGCA
CCAGCACCAGCACCACCGCCACCAGAAGTAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCGGCAGCAGCAGCAGCAGCAGCATCACACTGCCTACTTCTAC
CCTCGGCGATAATCTTAAAGCTGATTTTCCTGCGTTGCATCAGGATGCCT
ACCCAGGCAAACCCCTCGTCTATCTCGACTCGGCCGCCACCTCCCAAAAA
CCCAAACAGGTGCTGAATGCCATGTCCGAATATTATGAACACAGCAACGC
CAATGTCCATCGCGGTGCCCACGCCCTTTCCATCCGCGCAACAGAAGCTT
ACGAAGCCACAAGGGACAAGGTCCAAAACTTCATTCACGCCAGCACACGC
GAAGAGATCGTCTTTACGCGCGGCGCGACTGAGGCCATTAACCTTGTGGC
CAACACTTGGGGAATCCAGAATTTGAAAGCAGGAGATGAAATTTTATTGA
CAGTGATGGAGCACCATTCTAACCTGGTACCCTGGCAGTTGATCGCCAAA
AAGACGGGGGCTGTGATAAAGTTTGTGGGTTTGGATGAGGAGGAGGGATT
GGACCTGCCTCAATTTCACTCCTTGCTTTCAAGCAAGACCAAGCTGGTTG
CCTTCCCTCACGTTAGTAACACGCTCGGATGTATCTTGCCAGTGGCAGAG
ATGGCGGCTGCTGCACATGCTGTAGGTGCTCTTGTCCTGGTGGATGCCTG
CCAGAGCATTCCCCATATGAAGGTAGATGTGCAGGCGCTCGATGTCGATT
TTCTTGCAGCGAGCAGCCACAAGATGTGTGGCCCGACAGGGGCGGGATTC
TTGTACGGGAAATTGGGAGTGTTGAAGCAGATGCCACCGTGGCATGGGGG
GGGAGAAATGATTGATGAAGTCTTCTTCGAGTACTCGACCTTTGCAGAGC
CTCCGGCGAGATTCGAGGCGGGCACTCCCCCAATTGCCGAGGTCGTGGGT
ATGGGGGCGGCGTGTGATTACTTGATGGAAGTGGGGATGGAAAAGGTGGA
GGAGCATGAGCATCAATTGGGAAAGTATTTGTATGAGCGGTTGAGTGAAG
TGGAAGGGGTGAGAATATATGGTCCGCCGCCGGGTAAGGAGGGGAAGGGA
AGGGCGGCGTTGGCCTCGTTTAATACGGACCAGGTGCATGCGAGTGATTT
GGCGTTTTTCTTGGACCACGAGGGAGTGGCAATTCGTTCGGGCCATCACT
GCACGCAGCCTCTGCATCGGATGCTGCACGCCAAAGGCAGCCTGAGGGCG
AGCCTTTATGTGTACAATACGAAGGGGGATATCGATGTTTTTATCGCCAG
ATTGAAGGAGACAATGGAGTTTTTTGGAAACTTTCAGAGTGGAGGGGCGG
GGGCAGCGACGATTTTGTAG
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Synonyms
Publications