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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:888597..890452 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03220.1 vs.
Match: EWM27065.1 (hypothetical protein Naga_100056g28 [Nannochloropsis gaditana]) HSP 1 Score: 324.3 bits (830), Expect = 4.100e-85 Identity = 162/238 (68.07%), Postives = 187/238 (78.57%), Query Frame = 0
Query: 74 MRRLLLVCLGGLVGTTSYFLPFSFNQYAIARASELAVRKAQQQSITTKAHDLLNDLPELSDSRLAGWRLKKGGANPTADGEAGAVQAGQSVTAEESTVVKAARAVDPSLPQQYDVVEYPIPTHAHGLIENDGRVRGVGVLLSNNRDRLDANLLPADKVDLCQIEPLTLDPEGRY-EGQEG--LVVWQKDELEPRVFAAYSDLKKVKSKQNGMADKWRRWVLDEELTPGCGPPPGAEEE 309
MR L+ LGGLVG +SYFLPFSFNQYA ARA+E+A RKAQQQSI TKAHDLL+DLPEL+DSRLAGWRLKKG GE G S + E T R + PQQYDVVEYP+P+HAHG+++ D RVRGVGVLLSNNRDRLDA LPA+K+DLCQ+EPLTLDPEG++ G EG VW+KDELEPRVF AY+DL+K+ SKQNGMADKWRRW+L+E L+ GCGPPPGAEEE
Sbjct: 1 MRNTFLLLLGGLVGVSSYFLPFSFNQYATARANEIATRKAQQQSIATKAHDLLDDLPELTDSRLAGWRLKKGA---HGSGETGVEGDSASAASMEDTQAIVDRGTESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKITSKQNGMADKWRRWILEEPLSEGCGPPPGAEEE 235
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03220.1 ID=NO07G03220.1|Name=NO07G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1448bp AGAGAAAGGTCTCGAATGTTCGCCTCGTCTCTTTTGTTGTGGTGAGTTGT AGGAGGGTATGCATATATATATGAATGTATATTGTATATTGGTATATTGG GAGGGGAGTTACTGTAGGCTCCAGCCTCTTCACATACATTTTAGTTCTGG GATATTTGCCAATTTACGCAATCCAAAAGGATATTAAAAGCGCCTCTTTG TACGTCGAAAGGGGAAAGAGACTGGGGGTGTGGAGGGAGGGGAAGGGAAG CCGTAAAGGGTGTGGGGAGGTCAAGTCGTGTCCATTTCCCCATCTCTATC GACAAGCATCCTTGAGAAGCTCTGGAACCCTTAATAGTCTAAATCTTATC ACCACGCACATTACTCGGTGTATGCACGCAGATAACTCTATTGCTCTGTT GCTCTCCATTTTGGAGCTGTGTGAGGCCCATCACATGGTTGCTTGGCGCC GAACTTGACTTTGACCATCCTTTGACAGCCTTGGCTAGGGTCGATTTAGC CAACACAACATGAAGATGTCAAAGGTGTTGTTCTGGAAGTCTCTCCTGTT CATACTTGTGGTAAGCGTGCCAGAGGCGCGAGGTGCTGGTCCACCCACGA GAGCTGCTGGCCTGGCGGCGTTGTGCTCTCCAGCTGCAACTCAGTACGCA CGCCGTTTCAAGTTGTTTGCCTCAACTCACACCGCCCTGCCCCCTCCAAT CTCACACCACTTCCTCATTTTTACAGTGATGCGGCGGCTACTGTTGGTGT GCCTTGGAGGCCTGGTGGGTACGACTTCCTATTTCTTGCCCTTCTCGTTT AACCAGTACGCGATCGCCCGCGCCAGCGAGCTCGCCGTTCGCAAGGCCCA GCAACAGAGCATCACCACCAAAGCACACGACCTTCTCAATGACCTCCCAG AGCTGAGCGACTCAAGATTGGCGGGGTGGCGTCTGAAGAAAGGTGGAGCC AACCCCACAGCCGACGGAGAAGCCGGCGCAGTGCAGGCAGGGCAATCAGT TACGGCAGAAGAATCAACGGTAGTCAAAGCCGCGCGAGCTGTCGATCCAT CATTACCACAGCAATACGACGTGGTTGAGTACCCGATCCCCACGCACGCT CACGGCCTCATCGAAAACGACGGGCGGGTGCGAGGGGTAGGAGTGCTTCT GAGCAACAACCGTGATCGTCTCGACGCCAATCTCCTTCCAGCCGATAAAG TGGACTTATGTCAAATCGAGCCCTTGACACTTGATCCAGAAGGACGATAT GAGGGCCAAGAGGGATTGGTGGTCTGGCAGAAGGACGAGCTTGAACCGCG TGTATTTGCCGCCTACTCGGACTTAAAGAAAGTGAAGAGCAAGCAAAACG GTATGGCGGACAAGTGGCGTCGGTGGGTGCTGGACGAGGAATTGACCCCG GGTTGTGGACCACCTCCGGGCGCAGAGGAAGAAATCATGATGTTGTAA back to topprotein sequence of NO07G03220.1 >NO07G03220.1-protein ID=NO07G03220.1-protein|Name=NO07G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp MKMSKVLFWKSLLFILVVSVPEARGAGPPTRAAGLAALCSPAATQYARRF KLFASTHTALPPPISHHFLIFTVMRRLLLVCLGGLVGTTSYFLPFSFNQY AIARASELAVRKAQQQSITTKAHDLLNDLPELSDSRLAGWRLKKGGANPT ADGEAGAVQAGQSVTAEESTVVKAARAVDPSLPQQYDVVEYPIPTHAHGL IENDGRVRGVGVLLSNNRDRLDANLLPADKVDLCQIEPLTLDPEGRYEGQ EGLVVWQKDELEPRVFAAYSDLKKVKSKQNGMADKWRRWVLDEELTPGCG PPPGAEEEIMML* back to topmRNA from alignment at chr7:888597..890452+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03220.1 ID=NO07G03220.1|Name=NO07G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1856bp|location=Sequence derived from alignment at chr7:888597..890452+ (Nannochloropsis oceanica) AGAGAAAGGTCTCGAATGTTCGCCTCGTCTCTTTTGTTGTGGTGAGTTGT
AGGAGGGTATGCATATATATATGAATGTATATTGTATATTGGTATATTGG
GAGGGGAGTTACTGTAGGCTCCAGCCTCTTCACATACATTTTAGTTCTGG
GATATTTGCCAATTTACGCAATCCAAAAGGATATTAAAAGCGCCTCTTTG
TACGTCGAAAGGGGAAAGAGACTGGGGGTGTGGAGGGAGGGGAAGGGAAG
CCGTAAAGGGTGTGGGGAGGTCAAGTCGTGTCCATTTCCCCATCTCTATC
GACAAGCATCCTTGAGAAGCTCTGGAACCCTTAATAGTCTAAATCTTATC
ACCACGCACATTACTCGGTGTATGCACGCAGATAACTCTATTGCTCTGTT
GCTCTCCATTTTGGAGCTGTGTGAGGCCCATCACATGGTTGCTTGGCGCC
GAACTTGACTTTGACCATCCTTTGACAGCCTTGGCTAGGGTCGATTTAGC
CAACACAACATGAAGATGTCAAAGGTGTTGTTCTGGAAGTCTCTCCTGTT
CATACTTGTGGTAAGCGTGCCAGAGGCGCGAGGTGCTGGTCCACCCACGA
GAGCTGCTGGCCTGGCGGCGTTGTGCTCTCCAGCTGCAACTCAGTACGCA
CGCCGTTTCAAGTTGTTTGCCTCAACTCACACCGCCCTGCCCCCTCCAAT
CTCACACCACTTCCTCATTTTTACAGTGATGCGGCGGCTACTGTTGGTGT
GCCTTGGAGGCCTGGTGGGTACGACTTCCTATTTCTTGCCCTTCTCGTTT
AACCAGGTACGTGCACAGAGACCGAGAGACGATTGGCTAGTTGTAGCTGT
TCTCAGTCGCCGCTGCTGCTTTGTGGTGCACAGCAGCAGCGACCTTGTTC
TGAAAACATTAGAGGAGTGTATAAAAGAGAATGGGGACACTACCTTTTGT
GGTGGTGTGATTTGGGGTAGCGCTCGAGTGTTGAGCACAGGTCGAGGGGT
GAGAGGGGGATGCCAATGGTGCCCCCTGCGCTGCAACAACCACCCTGGAC
ATGGGCACATCAAGGCTACCCAAACATCCGGAGTCAAAATGAGCAAATAT
AGCAAAAAGAGGGAAACGGATTCGCTTGGACAAGCCATTCTGCGTCCTTT
CCACGCATCATGAACCCTCCTCACTTCTCCCTCTCCCAACCCTCCACCCC
ACACGACACGACAGTACGCGATCGCCCGCGCCAGCGAGCTCGCCGTTCGC
AAGGCCCAGCAACAGAGCATCACCACCAAAGCACACGACCTTCTCAATGA
CCTCCCAGAGCTGAGCGACTCAAGATTGGCGGGGTGGCGTCTGAAGAAAG
GTGGAGCCAACCCCACAGCCGACGGAGAAGCCGGCGCAGTGCAGGCAGGG
CAATCAGTTACGGCAGAAGAATCAACGGTAGTCAAAGCCGCGCGAGCTGT
CGATCCATCATTACCACAGCAATACGACGTGGTTGAGTACCCGATCCCCA
CGCACGCTCACGGCCTCATCGAAAACGACGGGCGGGTGCGAGGGGTAGGA
GTGCTTCTGAGCAACAACCGTGATCGTCTCGACGCCAATCTCCTTCCAGC
CGATAAAGTGGACTTATGTCAAATCGAGCCCTTGACACTTGATCCAGAAG
GACGATATGAGGGCCAAGAGGGATTGGTGGTCTGGCAGAAGGACGAGCTT
GAACCGCGTGTATTTGCCGCCTACTCGGACTTAAAGAAAGTGAAGAGCAA
GCAAAACGGTATGGCGGACAAGTGGCGTCGGTGGGTGCTGGACGAGGAAT
TGACCCCGGGTTGTGGACCACCTCCGGGCGCAGAGGAAGAAATCATGATG
TTGTAA back to topCoding sequence (CDS) from alignment at chr7:888597..890452+ >NO07G03220.1 ID=NO07G03220.1|Name=NO07G03220.1|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at chr7:888597..890452+ (Nannochloropsis oceanica) ATGAAGATGTCAAAGGTGTTGTTCTGGAAGTCTCTCCTGTTCATACTTGT GGTAAGCGTGCCAGAGGCGCGAGGTGCTGGTCCACCCACGAGAGCTGCTG GCCTGGCGGCGTTGTGCTCTCCAGCTGCAACTCAGTACGCACGCCGTTTC AAGTTGTTTGCCTCAACTCACACCGCCCTGCCCCCTCCAATCTCACACCA CTTCCTCATTTTTACAGTGATGCGGCGGCTACTGTTGGTGTGCCTTGGAG GCCTGGTGGGTACGACTTCCTATTTCTTGCCCTTCTCGTTTAACCAGTAC GCGATCGCCCGCGCCAGCGAGCTCGCCGTTCGCAAGGCCCAGCAACAGAG CATCACCACCAAAGCACACGACCTTCTCAATGACCTCCCAGAGCTGAGCG ACTCAAGATTGGCGGGGTGGCGTCTGAAGAAAGGTGGAGCCAACCCCACA GCCGACGGAGAAGCCGGCGCAGTGCAGGCAGGGCAATCAGTTACGGCAGA AGAATCAACGGTAGTCAAAGCCGCGCGAGCTGTCGATCCATCATTACCAC AGCAATACGACGTGGTTGAGTACCCGATCCCCACGCACGCTCACGGCCTC ATCGAAAACGACGGGCGGGTGCGAGGGGTAGGAGTGCTTCTGAGCAACAA CCGTGATCGTCTCGACGCCAATCTCCTTCCAGCCGATAAAGTGGACTTAT GTCAAATCGAGCCCTTGACACTTGATCCAGAAGGACGATATGAGGGCCAA GAGGGATTGGTGGTCTGGCAGAAGGACGAGCTTGAACCGCGTGTATTTGC CGCCTACTCGGACTTAAAGAAAGTGAAGAGCAAGCAAAACGGTATGGCGG ACAAGTGGCGTCGGTGGGTGCTGGACGAGGAATTGACCCCGGGTTGTGGA CCACCTCCGGGCGCAGAGGAAGAAATCATGATGTTGTAA back to top
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