NO07G03220.1, NO07G03220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03220.1
Unique NameNO07G03220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1448
Alignment locationchr7:888597..890452 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:888597..890452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G03220.1 vs.
Match: EWM27065.1 (hypothetical protein Naga_100056g28 [Nannochloropsis gaditana])

HSP 1 Score: 324.3 bits (830), Expect = 4.100e-85
Identity = 162/238 (68.07%), Postives = 187/238 (78.57%), Query Frame = 0
Query:   74 MRRLLLVCLGGLVGTTSYFLPFSFNQYAIARASELAVRKAQQQSITTKAHDLLNDLPELSDSRLAGWRLKKGGANPTADGEAGAVQAGQSVTAEESTVVKAARAVDPSLPQQYDVVEYPIPTHAHGLIENDGRVRGVGVLLSNNRDRLDANLLPADKVDLCQIEPLTLDPEGRY-EGQEG--LVVWQKDELEPRVFAAYSDLKKVKSKQNGMADKWRRWVLDEELTPGCGPPPGAEEE 309
            MR   L+ LGGLVG +SYFLPFSFNQYA ARA+E+A RKAQQQSI TKAHDLL+DLPEL+DSRLAGWRLKKG       GE G      S  + E T     R  +   PQQYDVVEYP+P+HAHG+++ D RVRGVGVLLSNNRDRLDA  LPA+K+DLCQ+EPLTLDPEG++  G EG    VW+KDELEPRVF AY+DL+K+ SKQNGMADKWRRW+L+E L+ GCGPPPGAEEE
Sbjct:    1 MRNTFLLLLGGLVGVSSYFLPFSFNQYATARANEIATRKAQQQSIATKAHDLLDDLPELTDSRLAGWRLKKGA---HGSGETGVEGDSASAASMEDTQAIVDRGTESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKITSKQNGMADKWRRWILEEPLSEGCGPPPGAEEE 235          
The following BLAST results are available for this feature:
BLAST of NO07G03220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27065.14.100e-8568.07hypothetical protein Naga_100056g28 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03220NO07G03220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03220.1NO07G03220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03220.1.cds1NO07G03220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03220.1.cds2NO07G03220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03220.1 ID=NO07G03220.1|Name=NO07G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1448bp
AGAGAAAGGTCTCGAATGTTCGCCTCGTCTCTTTTGTTGTGGTGAGTTGT
AGGAGGGTATGCATATATATATGAATGTATATTGTATATTGGTATATTGG
GAGGGGAGTTACTGTAGGCTCCAGCCTCTTCACATACATTTTAGTTCTGG
GATATTTGCCAATTTACGCAATCCAAAAGGATATTAAAAGCGCCTCTTTG
TACGTCGAAAGGGGAAAGAGACTGGGGGTGTGGAGGGAGGGGAAGGGAAG
CCGTAAAGGGTGTGGGGAGGTCAAGTCGTGTCCATTTCCCCATCTCTATC
GACAAGCATCCTTGAGAAGCTCTGGAACCCTTAATAGTCTAAATCTTATC
ACCACGCACATTACTCGGTGTATGCACGCAGATAACTCTATTGCTCTGTT
GCTCTCCATTTTGGAGCTGTGTGAGGCCCATCACATGGTTGCTTGGCGCC
GAACTTGACTTTGACCATCCTTTGACAGCCTTGGCTAGGGTCGATTTAGC
CAACACAACATGAAGATGTCAAAGGTGTTGTTCTGGAAGTCTCTCCTGTT
CATACTTGTGGTAAGCGTGCCAGAGGCGCGAGGTGCTGGTCCACCCACGA
GAGCTGCTGGCCTGGCGGCGTTGTGCTCTCCAGCTGCAACTCAGTACGCA
CGCCGTTTCAAGTTGTTTGCCTCAACTCACACCGCCCTGCCCCCTCCAAT
CTCACACCACTTCCTCATTTTTACAGTGATGCGGCGGCTACTGTTGGTGT
GCCTTGGAGGCCTGGTGGGTACGACTTCCTATTTCTTGCCCTTCTCGTTT
AACCAGTACGCGATCGCCCGCGCCAGCGAGCTCGCCGTTCGCAAGGCCCA
GCAACAGAGCATCACCACCAAAGCACACGACCTTCTCAATGACCTCCCAG
AGCTGAGCGACTCAAGATTGGCGGGGTGGCGTCTGAAGAAAGGTGGAGCC
AACCCCACAGCCGACGGAGAAGCCGGCGCAGTGCAGGCAGGGCAATCAGT
TACGGCAGAAGAATCAACGGTAGTCAAAGCCGCGCGAGCTGTCGATCCAT
CATTACCACAGCAATACGACGTGGTTGAGTACCCGATCCCCACGCACGCT
CACGGCCTCATCGAAAACGACGGGCGGGTGCGAGGGGTAGGAGTGCTTCT
GAGCAACAACCGTGATCGTCTCGACGCCAATCTCCTTCCAGCCGATAAAG
TGGACTTATGTCAAATCGAGCCCTTGACACTTGATCCAGAAGGACGATAT
GAGGGCCAAGAGGGATTGGTGGTCTGGCAGAAGGACGAGCTTGAACCGCG
TGTATTTGCCGCCTACTCGGACTTAAAGAAAGTGAAGAGCAAGCAAAACG
GTATGGCGGACAAGTGGCGTCGGTGGGTGCTGGACGAGGAATTGACCCCG
GGTTGTGGACCACCTCCGGGCGCAGAGGAAGAAATCATGATGTTGTAA
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protein sequence of NO07G03220.1

>NO07G03220.1-protein ID=NO07G03220.1-protein|Name=NO07G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MKMSKVLFWKSLLFILVVSVPEARGAGPPTRAAGLAALCSPAATQYARRF
KLFASTHTALPPPISHHFLIFTVMRRLLLVCLGGLVGTTSYFLPFSFNQY
AIARASELAVRKAQQQSITTKAHDLLNDLPELSDSRLAGWRLKKGGANPT
ADGEAGAVQAGQSVTAEESTVVKAARAVDPSLPQQYDVVEYPIPTHAHGL
IENDGRVRGVGVLLSNNRDRLDANLLPADKVDLCQIEPLTLDPEGRYEGQ
EGLVVWQKDELEPRVFAAYSDLKKVKSKQNGMADKWRRWVLDEELTPGCG
PPPGAEEEIMML*
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mRNA from alignment at chr7:888597..890452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03220.1 ID=NO07G03220.1|Name=NO07G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1856bp|location=Sequence derived from alignment at chr7:888597..890452+ (Nannochloropsis oceanica)
AGAGAAAGGTCTCGAATGTTCGCCTCGTCTCTTTTGTTGTGGTGAGTTGT AGGAGGGTATGCATATATATATGAATGTATATTGTATATTGGTATATTGG GAGGGGAGTTACTGTAGGCTCCAGCCTCTTCACATACATTTTAGTTCTGG GATATTTGCCAATTTACGCAATCCAAAAGGATATTAAAAGCGCCTCTTTG TACGTCGAAAGGGGAAAGAGACTGGGGGTGTGGAGGGAGGGGAAGGGAAG CCGTAAAGGGTGTGGGGAGGTCAAGTCGTGTCCATTTCCCCATCTCTATC GACAAGCATCCTTGAGAAGCTCTGGAACCCTTAATAGTCTAAATCTTATC ACCACGCACATTACTCGGTGTATGCACGCAGATAACTCTATTGCTCTGTT GCTCTCCATTTTGGAGCTGTGTGAGGCCCATCACATGGTTGCTTGGCGCC GAACTTGACTTTGACCATCCTTTGACAGCCTTGGCTAGGGTCGATTTAGC CAACACAACATGAAGATGTCAAAGGTGTTGTTCTGGAAGTCTCTCCTGTT CATACTTGTGGTAAGCGTGCCAGAGGCGCGAGGTGCTGGTCCACCCACGA GAGCTGCTGGCCTGGCGGCGTTGTGCTCTCCAGCTGCAACTCAGTACGCA CGCCGTTTCAAGTTGTTTGCCTCAACTCACACCGCCCTGCCCCCTCCAAT CTCACACCACTTCCTCATTTTTACAGTGATGCGGCGGCTACTGTTGGTGT GCCTTGGAGGCCTGGTGGGTACGACTTCCTATTTCTTGCCCTTCTCGTTT AACCAGGTACGTGCACAGAGACCGAGAGACGATTGGCTAGTTGTAGCTGT TCTCAGTCGCCGCTGCTGCTTTGTGGTGCACAGCAGCAGCGACCTTGTTC TGAAAACATTAGAGGAGTGTATAAAAGAGAATGGGGACACTACCTTTTGT GGTGGTGTGATTTGGGGTAGCGCTCGAGTGTTGAGCACAGGTCGAGGGGT GAGAGGGGGATGCCAATGGTGCCCCCTGCGCTGCAACAACCACCCTGGAC ATGGGCACATCAAGGCTACCCAAACATCCGGAGTCAAAATGAGCAAATAT AGCAAAAAGAGGGAAACGGATTCGCTTGGACAAGCCATTCTGCGTCCTTT CCACGCATCATGAACCCTCCTCACTTCTCCCTCTCCCAACCCTCCACCCC ACACGACACGACAGTACGCGATCGCCCGCGCCAGCGAGCTCGCCGTTCGC AAGGCCCAGCAACAGAGCATCACCACCAAAGCACACGACCTTCTCAATGA CCTCCCAGAGCTGAGCGACTCAAGATTGGCGGGGTGGCGTCTGAAGAAAG GTGGAGCCAACCCCACAGCCGACGGAGAAGCCGGCGCAGTGCAGGCAGGG CAATCAGTTACGGCAGAAGAATCAACGGTAGTCAAAGCCGCGCGAGCTGT CGATCCATCATTACCACAGCAATACGACGTGGTTGAGTACCCGATCCCCA CGCACGCTCACGGCCTCATCGAAAACGACGGGCGGGTGCGAGGGGTAGGA GTGCTTCTGAGCAACAACCGTGATCGTCTCGACGCCAATCTCCTTCCAGC CGATAAAGTGGACTTATGTCAAATCGAGCCCTTGACACTTGATCCAGAAG GACGATATGAGGGCCAAGAGGGATTGGTGGTCTGGCAGAAGGACGAGCTT GAACCGCGTGTATTTGCCGCCTACTCGGACTTAAAGAAAGTGAAGAGCAA GCAAAACGGTATGGCGGACAAGTGGCGTCGGTGGGTGCTGGACGAGGAAT TGACCCCGGGTTGTGGACCACCTCCGGGCGCAGAGGAAGAAATCATGATG TTGTAA
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Coding sequence (CDS) from alignment at chr7:888597..890452+

>NO07G03220.1 ID=NO07G03220.1|Name=NO07G03220.1|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at chr7:888597..890452+ (Nannochloropsis oceanica)
ATGAAGATGTCAAAGGTGTTGTTCTGGAAGTCTCTCCTGTTCATACTTGT
GGTAAGCGTGCCAGAGGCGCGAGGTGCTGGTCCACCCACGAGAGCTGCTG
GCCTGGCGGCGTTGTGCTCTCCAGCTGCAACTCAGTACGCACGCCGTTTC
AAGTTGTTTGCCTCAACTCACACCGCCCTGCCCCCTCCAATCTCACACCA
CTTCCTCATTTTTACAGTGATGCGGCGGCTACTGTTGGTGTGCCTTGGAG
GCCTGGTGGGTACGACTTCCTATTTCTTGCCCTTCTCGTTTAACCAGTAC
GCGATCGCCCGCGCCAGCGAGCTCGCCGTTCGCAAGGCCCAGCAACAGAG
CATCACCACCAAAGCACACGACCTTCTCAATGACCTCCCAGAGCTGAGCG
ACTCAAGATTGGCGGGGTGGCGTCTGAAGAAAGGTGGAGCCAACCCCACA
GCCGACGGAGAAGCCGGCGCAGTGCAGGCAGGGCAATCAGTTACGGCAGA
AGAATCAACGGTAGTCAAAGCCGCGCGAGCTGTCGATCCATCATTACCAC
AGCAATACGACGTGGTTGAGTACCCGATCCCCACGCACGCTCACGGCCTC
ATCGAAAACGACGGGCGGGTGCGAGGGGTAGGAGTGCTTCTGAGCAACAA
CCGTGATCGTCTCGACGCCAATCTCCTTCCAGCCGATAAAGTGGACTTAT
GTCAAATCGAGCCCTTGACACTTGATCCAGAAGGACGATATGAGGGCCAA
GAGGGATTGGTGGTCTGGCAGAAGGACGAGCTTGAACCGCGTGTATTTGC
CGCCTACTCGGACTTAAAGAAAGTGAAGAGCAAGCAAAACGGTATGGCGG
ACAAGTGGCGTCGGTGGGTGCTGGACGAGGAATTGACCCCGGGTTGTGGA
CCACCTCCGGGCGCAGAGGAAGAAATCATGATGTTGTAA
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Synonyms
Publications