NO07G03180.1, NO07G03180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03180.1
Unique NameNO07G03180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1242
Alignment locationchr7:881310..882551 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:881310..882551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G03180.1 vs.
Match: EWM27052.1 (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 409.1 bits (1050), Expect = 1.700e-110
Identity = 241/428 (56.31%), Postives = 287/428 (67.06%), Query Frame = 0
Query:   15 EGMLPLHPHPQRHSITQLQWVLQMAHSAEPADQQKAAMELNIMIEGTTLFPLVSFAPMAHSLCRLLPSQDQTVVHYAARAVKTLLLDDALRGQALLVGLPRVLITALHTWQEEVPCLREILGALQTLSWDKHCVKSIVA-----PGTGPGIGRSSISTSASTSSGCDHNEAAMKENSTSTPKLDISSTEERGIADTCTPATSITT-------TSCALLP-------VLALLQACDQEVATLALAITANLCAHSDTLLLAHQDFILAVNEALPNVLQAALSCDRLLRCYGVATLANASANPFLAGRIKELGGVEVVEKIERECLRTNTVTFGGTRVSECCQVALLRLAG-----------SSAGIDSCSKGGKKEGRTLLGMKKFKFKFGNTPALELTLDGSKNRARIVGCLMLWVVGILLVLQPVLRP 413
            E +LP+    Q HS+ +++ ++ +AHS + ADQQKAA +LN +I G   FP++SFAPMAH+LCRLLPS D+TVV++AARA KTLLLDDALRGQA+LVGLP VL+ AL TWQEE PCLREILG+LQTLSWDKH VKS++A      G   G       +  S ++  D       +      K DISSTEER       PA  IT+       T+   LP       +LALLQ  D EV TL+LAI ANLCA+SDT LL HQ FI AV + LP VL+ A +  RLLRCYGVATLANASANP L GR+KELGG  VVEKIE+E L+ NTV FGGTRVSECC+V LLRLAG           S    D     G + GR LL  KKFKFK+GNTP LELTLDG++NR  +V C+ LWVV ILL LQP+LRP
Sbjct:   11 EDVLPVQGRKQPHSMIRVKRIVSLAHSQDVADQQKAATDLNTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTVKSLIACLATEYGQSTGKNTEQAGSPGSENAQVDSMGLIPYQRGAVHTKQDISSTEERDAG--LAPAAHITSTQPMMAATTAVTLPSVGRLASILALLQTRDLEVVTLSLAIVANLCAYSDTYLLTHQGFIHAVRDVLPRVLEVAQNQSRLLRCYGVATLANASANPVLLGRMKELGGGAVVEKIEQEDLKANTVAFGGTRVSECCEVVLLRLAGGKHESLGGSVASGNRNDDKLHDGGESGRVLL-TKKFKFKYGNTPTLELTLDGNQNRTTVVICIFLWVVCILLFLQPILRP 435          
The following BLAST results are available for this feature:
BLAST of NO07G03180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27052.11.700e-11056.31expressed unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03180NO07G03180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03180.1NO07G03180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03180.1.cds1NO07G03180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03180.1 ID=NO07G03180.1|Name=NO07G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp
ATGGCTACTCCTGTGATCACCAGGTCGGCAGCTGCACTCGAGGAAGGGAT
GCTACCCCTGCATCCACACCCACAGCGCCACTCAATAACTCAACTGCAAT
GGGTCCTGCAGATGGCACACTCGGCAGAGCCCGCAGACCAACAGAAGGCG
GCCATGGAGTTGAATATTATGATTGAAGGCACTACACTCTTTCCCCTGGT
CTCTTTTGCCCCCATGGCCCACTCCTTGTGCCGTCTTCTACCGAGCCAAG
ACCAAACAGTGGTCCACTATGCAGCTCGAGCAGTGAAAACGCTGCTGCTT
GACGACGCATTGAGGGGACAAGCCTTGCTTGTAGGGCTACCCAGGGTACT
CATCACTGCACTGCACACGTGGCAGGAAGAAGTGCCCTGCTTGCGGGAAA
TCTTGGGCGCATTGCAGACCTTGTCATGGGACAAACACTGTGTCAAGAGC
ATTGTGGCGCCGGGGACAGGGCCGGGAATAGGCCGCAGCAGCATCAGCAC
CAGCGCCAGCACCAGTAGCGGCTGCGACCATAATGAGGCTGCGATGAAAG
AAAATAGTACCAGCACACCCAAACTTGATATTAGCAGCACCGAGGAAAGA
GGCATTGCTGACACCTGTACGCCCGCGACGTCAATCACGACTACCTCCTG
TGCGTTGCTCCCCGTCCTTGCTCTACTTCAAGCCTGCGATCAAGAGGTAG
CAACGCTAGCCTTAGCTATCACCGCTAATCTGTGCGCCCATAGCGACACG
CTCCTACTTGCACACCAAGATTTCATTCTTGCCGTCAATGAGGCACTCCC
TAATGTGTTACAAGCCGCGCTGAGCTGTGATCGGTTGCTGCGATGCTATG
GTGTTGCTACACTGGCCAACGCGAGTGCGAACCCGTTTTTGGCCGGGAGG
ATAAAAGAGTTAGGTGGCGTGGAGGTTGTGGAAAAGATTGAGAGGGAGTG
TTTGAGGACGAATACGGTGACGTTTGGGGGGACAAGGGTGAGTGAGTGTT
GCCAGGTGGCTTTGTTGAGATTGGCGGGAAGTAGTGCGGGTATTGACAGC
TGTAGCAAGGGGGGAAAGAAGGAGGGTAGGACGTTGTTGGGAATGAAAAA
GTTTAAGTTTAAGTTTGGGAATACGCCGGCGTTGGAGTTGACGTTGGATG
GGAGCAAGAACCGGGCAAGAATTGTAGGGTGTTTGATGTTATGGGTGGTG
GGAATTTTGTTGGTGTTGCAGCCAGTGCTTAGGCCTAATTAA
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protein sequence of NO07G03180.1

>NO07G03180.1-protein ID=NO07G03180.1-protein|Name=NO07G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MATPVITRSAAALEEGMLPLHPHPQRHSITQLQWVLQMAHSAEPADQQKA
AMELNIMIEGTTLFPLVSFAPMAHSLCRLLPSQDQTVVHYAARAVKTLLL
DDALRGQALLVGLPRVLITALHTWQEEVPCLREILGALQTLSWDKHCVKS
IVAPGTGPGIGRSSISTSASTSSGCDHNEAAMKENSTSTPKLDISSTEER
GIADTCTPATSITTTSCALLPVLALLQACDQEVATLALAITANLCAHSDT
LLLAHQDFILAVNEALPNVLQAALSCDRLLRCYGVATLANASANPFLAGR
IKELGGVEVVEKIERECLRTNTVTFGGTRVSECCQVALLRLAGSSAGIDS
CSKGGKKEGRTLLGMKKFKFKFGNTPALELTLDGSKNRARIVGCLMLWVV
GILLVLQPVLRPN*
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mRNA from alignment at chr7:881310..882551-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03180.1 ID=NO07G03180.1|Name=NO07G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp|location=Sequence derived from alignment at chr7:881310..882551- (Nannochloropsis oceanica)
ATGGCTACTCCTGTGATCACCAGGTCGGCAGCTGCACTCGAGGAAGGGAT GCTACCCCTGCATCCACACCCACAGCGCCACTCAATAACTCAACTGCAAT GGGTCCTGCAGATGGCACACTCGGCAGAGCCCGCAGACCAACAGAAGGCG GCCATGGAGTTGAATATTATGATTGAAGGCACTACACTCTTTCCCCTGGT CTCTTTTGCCCCCATGGCCCACTCCTTGTGCCGTCTTCTACCGAGCCAAG ACCAAACAGTGGTCCACTATGCAGCTCGAGCAGTGAAAACGCTGCTGCTT GACGACGCATTGAGGGGACAAGCCTTGCTTGTAGGGCTACCCAGGGTACT CATCACTGCACTGCACACGTGGCAGGAAGAAGTGCCCTGCTTGCGGGAAA TCTTGGGCGCATTGCAGACCTTGTCATGGGACAAACACTGTGTCAAGAGC ATTGTGGCGCCGGGGACAGGGCCGGGAATAGGCCGCAGCAGCATCAGCAC CAGCGCCAGCACCAGTAGCGGCTGCGACCATAATGAGGCTGCGATGAAAG AAAATAGTACCAGCACACCCAAACTTGATATTAGCAGCACCGAGGAAAGA GGCATTGCTGACACCTGTACGCCCGCGACGTCAATCACGACTACCTCCTG TGCGTTGCTCCCCGTCCTTGCTCTACTTCAAGCCTGCGATCAAGAGGTAG CAACGCTAGCCTTAGCTATCACCGCTAATCTGTGCGCCCATAGCGACACG CTCCTACTTGCACACCAAGATTTCATTCTTGCCGTCAATGAGGCACTCCC TAATGTGTTACAAGCCGCGCTGAGCTGTGATCGGTTGCTGCGATGCTATG GTGTTGCTACACTGGCCAACGCGAGTGCGAACCCGTTTTTGGCCGGGAGG ATAAAAGAGTTAGGTGGCGTGGAGGTTGTGGAAAAGATTGAGAGGGAGTG TTTGAGGACGAATACGGTGACGTTTGGGGGGACAAGGGTGAGTGAGTGTT GCCAGGTGGCTTTGTTGAGATTGGCGGGAAGTAGTGCGGGTATTGACAGC TGTAGCAAGGGGGGAAAGAAGGAGGGTAGGACGTTGTTGGGAATGAAAAA GTTTAAGTTTAAGTTTGGGAATACGCCGGCGTTGGAGTTGACGTTGGATG GGAGCAAGAACCGGGCAAGAATTGTAGGGTGTTTGATGTTATGGGTGGTG GGAATTTTGTTGGTGTTGCAGCCAGTGCTTAGGCCTAATTAA
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Coding sequence (CDS) from alignment at chr7:881310..882551-

>NO07G03180.1 ID=NO07G03180.1|Name=NO07G03180.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr7:881310..882551- (Nannochloropsis oceanica)
ATGGCTACTCCTGTGATCACCAGGTCGGCAGCTGCACTCGAGGAAGGGAT
GCTACCCCTGCATCCACACCCACAGCGCCACTCAATAACTCAACTGCAAT
GGGTCCTGCAGATGGCACACTCGGCAGAGCCCGCAGACCAACAGAAGGCG
GCCATGGAGTTGAATATTATGATTGAAGGCACTACACTCTTTCCCCTGGT
CTCTTTTGCCCCCATGGCCCACTCCTTGTGCCGTCTTCTACCGAGCCAAG
ACCAAACAGTGGTCCACTATGCAGCTCGAGCAGTGAAAACGCTGCTGCTT
GACGACGCATTGAGGGGACAAGCCTTGCTTGTAGGGCTACCCAGGGTACT
CATCACTGCACTGCACACGTGGCAGGAAGAAGTGCCCTGCTTGCGGGAAA
TCTTGGGCGCATTGCAGACCTTGTCATGGGACAAACACTGTGTCAAGAGC
ATTGTGGCGCCGGGGACAGGGCCGGGAATAGGCCGCAGCAGCATCAGCAC
CAGCGCCAGCACCAGTAGCGGCTGCGACCATAATGAGGCTGCGATGAAAG
AAAATAGTACCAGCACACCCAAACTTGATATTAGCAGCACCGAGGAAAGA
GGCATTGCTGACACCTGTACGCCCGCGACGTCAATCACGACTACCTCCTG
TGCGTTGCTCCCCGTCCTTGCTCTACTTCAAGCCTGCGATCAAGAGGTAG
CAACGCTAGCCTTAGCTATCACCGCTAATCTGTGCGCCCATAGCGACACG
CTCCTACTTGCACACCAAGATTTCATTCTTGCCGTCAATGAGGCACTCCC
TAATGTGTTACAAGCCGCGCTGAGCTGTGATCGGTTGCTGCGATGCTATG
GTGTTGCTACACTGGCCAACGCGAGTGCGAACCCGTTTTTGGCCGGGAGG
ATAAAAGAGTTAGGTGGCGTGGAGGTTGTGGAAAAGATTGAGAGGGAGTG
TTTGAGGACGAATACGGTGACGTTTGGGGGGACAAGGGTGAGTGAGTGTT
GCCAGGTGGCTTTGTTGAGATTGGCGGGAAGTAGTGCGGGTATTGACAGC
TGTAGCAAGGGGGGAAAGAAGGAGGGTAGGACGTTGTTGGGAATGAAAAA
GTTTAAGTTTAAGTTTGGGAATACGCCGGCGTTGGAGTTGACGTTGGATG
GGAGCAAGAACCGGGCAAGAATTGTAGGGTGTTTGATGTTATGGGTGGTG
GGAATTTTGTTGGTGTTGCAGCCAGTGCTTAGGCCTAATTAA
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Synonyms
Publications