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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr7 | genome | chr7:875534..878061 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03160.1 vs.
Match: EWM27062.1 (Vacuolar sorting protein 9 [Nannochloropsis gaditana]) HSP 1 Score: 275.0 bits (702), Expect = 7.300e-70 Identity = 182/374 (48.66%), Postives = 228/374 (60.96%), Query Frame = 0
Query: 444 SISSNSNSSNSGNSHVINLPVFTPHCIVAFLNYFITNRLLLPYSLPPVLRPALAGLVVSYVFRKARRVVSGYVKGGDILLPSLNQQWREQVQKARNLPPHILGVPDSFLSSLQRADRKEKREGEKVEFLGETTRALTRMGLKLTPLDALDSLLVAVRCLHKEAAVAAAAAAAAAAGVGGEKDGEGGDGGDEGEVAATAAASGTAAKAIVGNGTGGGKEGKKRLTLTPQQSLPADVLFPLLVYALVHADCPDVFSSLYLLRHFASGDENVGEKAYYITTWEAAVAHVLYRK-DEEKAGEG------------RRGREEEEEEEEEEEECHVSLEELGPCFTAEEHQRGLAYLDEWLASESAMEETMDILEQDGWF 805
S+ + + + ++G+ + ++TP CIVAF+NYF+ +RLL+PY+LPP LRPAL GL+ + VFR+ARR SGYVKGGD + P LN+QWREQVQ AR L LGVP +L ET R L+ M L +TPL+ ++LL AVRCLH EA AAA A G + GG+GG EG+ A A S P SLPADVLFPLLVYALV ++CPD+FS LY+LRHFASG+ +VGE+AYY TT EAAVAH+ + EE+ EG R G +E EEE E V LE+LGP F+ EE +RGL +LDEWLA+E+AMEETMDILEQDGWF
Sbjct: 384 SLPTTTTAVSNGSGSPRDTYLYTPRCIVAFINYFVHDRLLVPYALPPALRPALLGLMQALVFRRARRASSGYVKGGDQVFPELNKQWREQVQAARRLDATALGVPPPYLWGCP---------------FPETARVLSEMALSMTPLEMTEALLRAVRCLHHEAG--AAAVKAQREGRLQKLQRAGGEGGGEGDREARTAES------------------------EPAHSLPADVLFPLLVYALVQSECPDIFSCLYVLRHFASGN-HVGEQAYYCTTLEAAVAHIFWLPVGEERRREGGSHVAAEDETGGREGGLQEAVEEEGGMEEPV-LEDLGPSFSVEEQERGLQFLDEWLAAEAAMEETMDILEQDGWF 714
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03160.1 ID=NO07G03160.1|Name=NO07G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2415bp
ATGACAACGCCCCAGCCTGGCCGTCAGCGACCTTCAACCCTTACAGGCTT
GATGGACGCCTTGGGCTCTTTGCTGCCCCATCCTTTCCAACACCAACAGT
CGTATGCCCCATCCTCCTCCCTCTCCCGGTACCGCTCCTTGCTGCAAACG
GAAGCCTCACGCCTGCAAGCACAATCCTACAAGGCGGCCAGGGCCCTCCT
CGCCTTGGCAGAAGCGAGTGCGAAGGAAGAAAATATGCTCTTGAGGACGG
GGGGGCGGCGGCACCTAGGGCTATGGAGACATCATGCCTCGCTTCGACGG
GCATTGCTGTTGCTCGAGCAAGAGCAGTGGGCTCAAGCTGCCGGGGTATT
GATCAAGCAGGAAGCAATGGTGATGGCCTGGCTACAAAAGGAGGACGAGG
AACGAAAAGTAGGAAGTGATGGACAGCAGGGGAAAGAGGATGGAGAGCGG
GCGAAAGCAGCAGAGCCCGTGCTACGACCACCGGCCGAGCTGCTGGAAGC
CGACGAGGGCATCAAGGCGTTAAAAAAACGGCGGCGGAAATTGCTACATT
TGACCAAGGAAGCGAGTGTGCTTTATGTGAGTGGCGGTGGAGGAATCGAT
AACCATGGACAACCGTCATCGCCGCCACCATTGCTTTCCACGAGAGAATC
TTCCTCCTCCGCTTCCTCCTCTTTCAGCTTCTTGACCTCCTTGTCCTCCT
CTCCCGCAACACCCAGCGACCAGCACCAACAACGGAAACAGTCCCAATCA
CTACAAATACAACATCAGCAACGTCGACAAGAGCAACAAGACACCAAAAT
CCTGCAACTCCGCATGTATCTTGAACGTGAATTCTCGTACCTAGTAGAGG
ACCAGCGGTACCGCGAGGGCCGCCTCCTCGACCGGTGGCTCGCCCTCATC
CAAGCAGCCGCCAGTCAAAGCAACACTATTGCAGCCGCTGTTGCGCATCG
AAAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAACAACAACAACAACAACAAGAACAACAAGAACAACAACAA
CAAGAACAACAACAAGAACAACAAGAACAACAACAAGAAGAACAACAACA
AGAACAACGACAAGAACAACGACAACAAGAGCAGCAGAAGCAACAGCATA
AGCACTCTCAGGGTAAGGAGCATCACCAACAGCAGCAGCGGACTATGCCG
AGAAGTAGAAGTGCCTTCTCTCTCTCCTCTTCTGCCTCTCCTACCACCAA
TATCTACCCGACGAGCAGTGCCATAAGCAAACACAGTAGCAAAGACAGAA
ACAGCAACAACAACCACAACCACAACAACAGCATCAGCAGCAATAGCAAC
AGCAGCAACAGTGGTAACAGCCACGTCATCAACCTCCCTGTATTTACCCC
TCACTGCATCGTCGCCTTCCTCAACTATTTTATAACCAACCGCCTCCTCC
TCCCCTACTCCCTTCCTCCCGTCCTCCGCCCTGCCCTCGCCGGTCTAGTT
GTATCATATGTTTTTCGCAAGGCCCGTCGCGTCGTCTCAGGTTACGTGAA
AGGTGGAGATATCCTCCTTCCCTCCCTCAACCAGCAATGGCGCGAGCAGG
TTCAAAAAGCGAGAAATTTACCTCCACATATCCTAGGCGTACCCGATTCG
TTTCTGTCTTCACTTCAGAGGGCAGATAGGAAGGAAAAGAGGGAAGGAGA
GAAGGTGGAGTTCTTGGGTGAGACAACACGGGCACTGACTAGAATGGGAT
TGAAGCTGACGCCGTTGGATGCGTTGGATTCCTTGTTGGTAGCTGTGAGG
TGCTTACACAAAGAGGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGGAGTGGGTGGAGAAAAAGATGGAGAAGGAGGAGATGGAGGGGATG
AAGGAGAGGTAGCTGCGACAGCAGCAGCGTCAGGGACAGCAGCAAAAGCA
ATAGTAGGAAATGGAACAGGAGGAGGGAAGGAGGGAAAGAAACGCCTAAC
CTTGACCCCACAACAATCATTGCCGGCTGATGTTCTTTTCCCCTTGCTGG
TCTACGCCTTAGTCCACGCGGACTGTCCCGACGTGTTTTCGTCTTTGTAT
TTGTTGAGACACTTTGCAAGTGGTGACGAGAATGTGGGCGAGAAAGCTTA
CTATATCACCACCTGGGAAGCTGCAGTTGCGCATGTCTTGTACAGGAAGG
ATGAGGAGAAGGCTGGAGAGGGAAGGCGAGGGAGGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGTGCCATGTGTCGCTTGAGGAACTGGGTCC
ATGTTTCACAGCGGAGGAGCACCAGAGGGGTTTGGCTTATTTGGATGAAT
GGTTGGCGTCCGAGAGTGCGATGGAGGAGACGATGGACATCTTGGAACAG
GACGGGTGGTTTTGA back to topprotein sequence of NO07G03160.1 >NO07G03160.1-protein ID=NO07G03160.1-protein|Name=NO07G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=805bp
MTTPQPGRQRPSTLTGLMDALGSLLPHPFQHQQSYAPSSSLSRYRSLLQT
EASRLQAQSYKAARALLALAEASAKEENMLLRTGGRRHLGLWRHHASLRR
ALLLLEQEQWAQAAGVLIKQEAMVMAWLQKEDEERKVGSDGQQGKEDGER
AKAAEPVLRPPAELLEADEGIKALKKRRRKLLHLTKEASVLYVSGGGGID
NHGQPSSPPPLLSTRESSSSASSSFSFLTSLSSSPATPSDQHQQRKQSQS
LQIQHQQRRQEQQDTKILQLRMYLEREFSYLVEDQRYREGRLLDRWLALI
QAAASQSNTIAAAVAHRKQQQQQQQQQQQQQQQQQQQQQQQQQEQQEQQQ
QEQQQEQQEQQQEEQQQEQRQEQRQQEQQKQQHKHSQGKEHHQQQQRTMP
RSRSAFSLSSSASPTTNIYPTSSAISKHSSKDRNSNNNHNHNNSISSNSN
SSNSGNSHVINLPVFTPHCIVAFLNYFITNRLLLPYSLPPVLRPALAGLV
VSYVFRKARRVVSGYVKGGDILLPSLNQQWREQVQKARNLPPHILGVPDS
FLSSLQRADRKEKREGEKVEFLGETTRALTRMGLKLTPLDALDSLLVAVR
CLHKEAAVAAAAAAAAAAGVGGEKDGEGGDGGDEGEVAATAAASGTAAKA
IVGNGTGGGKEGKKRLTLTPQQSLPADVLFPLLVYALVHADCPDVFSSLY
LLRHFASGDENVGEKAYYITTWEAAVAHVLYRKDEEKAGEGRRGREEEEE
EEEEEEECHVSLEELGPCFTAEEHQRGLAYLDEWLASESAMEETMDILEQ
DGWF* back to topmRNA from alignment at chr7:875534..878061- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03160.1 ID=NO07G03160.1|Name=NO07G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2528bp|location=Sequence derived from alignment at chr7:875534..878061- (Nannochloropsis oceanica)
ATGACAACGCCCCAGCCTGGCCGTCAGCGACCTTCAACCCTTACAGGCTT
GATGGACGCCTTGGGCTCTTTGCTGCCCCATCCTTTCCAACACCAACAGT
CGTATGCCCCATCCTCCTCCCTCTCCCGGTACCGCTCCTTGCTGCAAACG
GAAGCCTCACGCCTGCAAGCACAATCCTACAAGGCGGCCAGGGCCCTCCT
CGCCTTGGCAGAAGCGAGTGCGAAGGAAGAAAATATGCTCTTGAGGACGG
GGGGGCGGCGGCACCTAGGGCTATGGAGACATCATGCCTCGCTTCGACGG
GCATTGCTGTTGCTCGAGCAAGAGCAGTGGGCTCAAGCTGCCGGGGTATT
GATCAAGCAGGAAGCAATGGTGATGGCCTGGCTACAAAAGGAGGACGAGG
AACGAAAAGTAGGAAGTGATGGACAGCAGGGGAAAGAGGATGGAGAGCGG
GCGAAAGCAGCAGAGCCCGTGCTACGACCACCGGCCGAGCTGCTGGAAGC
CGACGAGGGCATCAAGGCGTTAAAAAAACGGCGGTATTGCTTAACGCAGC
TCTGTACAGATGCAGAAGAGGCAATGGATCATCGAGGGAGGGTGGGAGGA
TTGGAGAGTGTGGGGGGGGGGGATTTGACTCGCATGACGAACGCAGGCGG
AAATTGCTACATTTGACCAAGGAAGCGAGTGTGCTTTATGTGAGTGGCGG
TGGAGGAATCGATAACCATGGACAACCGTCATCGCCGCCACCATTGCTTT
CCACGAGAGAATCTTCCTCCTCCGCTTCCTCCTCTTTCAGCTTCTTGACC
TCCTTGTCCTCCTCTCCCGCAACACCCAGCGACCAGCACCAACAACGGAA
ACAGTCCCAATCACTACAAATACAACATCAGCAACGTCGACAAGAGCAAC
AAGACACCAAAATCCTGCAACTCCGCATGTATCTTGAACGTGAATTCTCG
TACCTAGTAGAGGACCAGCGGTACCGCGAGGGCCGCCTCCTCGACCGGTG
GCTCGCCCTCATCCAAGCAGCCGCCAGTCAAAGCAACACTATTGCAGCCG
CTGTTGCGCATCGAAAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAAGAACAACA
AGAACAACAACAACAAGAACAACAACAAGAACAACAAGAACAACAACAAG
AAGAACAACAACAAGAACAACGACAAGAACAACGACAACAAGAGCAGCAG
AAGCAACAGCATAAGCACTCTCAGGGTAAGGAGCATCACCAACAGCAGCA
GCGGACTATGCCGAGAAGTAGAAGTGCCTTCTCTCTCTCCTCTTCTGCCT
CTCCTACCACCAATATCTACCCGACGAGCAGTGCCATAAGCAAACACAGT
AGCAAAGACAGAAACAGCAACAACAACCACAACCACAACAACAGCATCAG
CAGCAATAGCAACAGCAGCAACAGTGGTAACAGCCACGTCATCAACCTCC
CTGTATTTACCCCTCACTGCATCGTCGCCTTCCTCAACTATTTTATAACC
AACCGCCTCCTCCTCCCCTACTCCCTTCCTCCCGTCCTCCGCCCTGCCCT
CGCCGGTCTAGTTGTATCATATGTTTTTCGCAAGGCCCGTCGCGTCGTCT
CAGGTTACGTGAAAGGTGGAGATATCCTCCTTCCCTCCCTCAACCAGCAA
TGGCGCGAGCAGGTTCAAAAAGCGAGAAATTTACCTCCACATATCCTAGG
CGTACCCGATTCGTTTCTGTCTTCACTTCAGAGGGCAGATAGGAAGGAAA
AGAGGGAAGGAGAGAAGGTGGAGTTCTTGGGTGAGACAACACGGGCACTG
ACTAGAATGGGATTGAAGCTGACGCCGTTGGATGCGTTGGATTCCTTGTT
GGTAGCTGTGAGGTGCTTACACAAAGAGGCAGCAGTAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGAGTGGGTGGAGAAAAAGATGGAGAAGGAGGA
GATGGAGGGGATGAAGGAGAGGTAGCTGCGACAGCAGCAGCGTCAGGGAC
AGCAGCAAAAGCAATAGTAGGAAATGGAACAGGAGGAGGGAAGGAGGGAA
AGAAACGCCTAACCTTGACCCCACAACAATCATTGCCGGCTGATGTTCTT
TTCCCCTTGCTGGTCTACGCCTTAGTCCACGCGGACTGTCCCGACGTGTT
TTCGTCTTTGTATTTGTTGAGACACTTTGCAAGTGGTGACGAGAATGTGG
GCGAGAAAGCTTACTATATCACCACCTGGGAAGCTGCAGTTGCGCATGTC
TTGTACAGGAAGGATGAGGAGAAGGCTGGAGAGGGAAGGCGAGGGAGGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGCCATGTGTCGCTTG
AGGAACTGGGTCCATGTTTCACAGCGGAGGAGCACCAGAGGGGTTTGGCT
TATTTGGATGAATGGTTGGCGTCCGAGAGTGCGATGGAGGAGACGATGGA
CATCTTGGAACAGGACGGGTGGTTTTGA back to topCoding sequence (CDS) from alignment at chr7:875534..878061- >NO07G03160.1 ID=NO07G03160.1|Name=NO07G03160.1|organism=Nannochloropsis oceanica|type=CDS|length=2415bp|location=Sequence derived from alignment at chr7:875534..878061- (Nannochloropsis oceanica)
ATGACAACGCCCCAGCCTGGCCGTCAGCGACCTTCAACCCTTACAGGCTT
GATGGACGCCTTGGGCTCTTTGCTGCCCCATCCTTTCCAACACCAACAGT
CGTATGCCCCATCCTCCTCCCTCTCCCGGTACCGCTCCTTGCTGCAAACG
GAAGCCTCACGCCTGCAAGCACAATCCTACAAGGCGGCCAGGGCCCTCCT
CGCCTTGGCAGAAGCGAGTGCGAAGGAAGAAAATATGCTCTTGAGGACGG
GGGGGCGGCGGCACCTAGGGCTATGGAGACATCATGCCTCGCTTCGACGG
GCATTGCTGTTGCTCGAGCAAGAGCAGTGGGCTCAAGCTGCCGGGGTATT
GATCAAGCAGGAAGCAATGGTGATGGCCTGGCTACAAAAGGAGGACGAGG
AACGAAAAGTAGGAAGTGATGGACAGCAGGGGAAAGAGGATGGAGAGCGG
GCGAAAGCAGCAGAGCCCGTGCTACGACCACCGGCCGAGCTGCTGGAAGC
CGACGAGGGCATCAAGGCGTTAAAAAAACGGCGGCGGAAATTGCTACATT
TGACCAAGGAAGCGAGTGTGCTTTATGTGAGTGGCGGTGGAGGAATCGAT
AACCATGGACAACCGTCATCGCCGCCACCATTGCTTTCCACGAGAGAATC
TTCCTCCTCCGCTTCCTCCTCTTTCAGCTTCTTGACCTCCTTGTCCTCCT
CTCCCGCAACACCCAGCGACCAGCACCAACAACGGAAACAGTCCCAATCA
CTACAAATACAACATCAGCAACGTCGACAAGAGCAACAAGACACCAAAAT
CCTGCAACTCCGCATGTATCTTGAACGTGAATTCTCGTACCTAGTAGAGG
ACCAGCGGTACCGCGAGGGCCGCCTCCTCGACCGGTGGCTCGCCCTCATC
CAAGCAGCCGCCAGTCAAAGCAACACTATTGCAGCCGCTGTTGCGCATCG
AAAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAACAACAACAACAACAACAAGAACAACAAGAACAACAACAA
CAAGAACAACAACAAGAACAACAAGAACAACAACAAGAAGAACAACAACA
AGAACAACGACAAGAACAACGACAACAAGAGCAGCAGAAGCAACAGCATA
AGCACTCTCAGGGTAAGGAGCATCACCAACAGCAGCAGCGGACTATGCCG
AGAAGTAGAAGTGCCTTCTCTCTCTCCTCTTCTGCCTCTCCTACCACCAA
TATCTACCCGACGAGCAGTGCCATAAGCAAACACAGTAGCAAAGACAGAA
ACAGCAACAACAACCACAACCACAACAACAGCATCAGCAGCAATAGCAAC
AGCAGCAACAGTGGTAACAGCCACGTCATCAACCTCCCTGTATTTACCCC
TCACTGCATCGTCGCCTTCCTCAACTATTTTATAACCAACCGCCTCCTCC
TCCCCTACTCCCTTCCTCCCGTCCTCCGCCCTGCCCTCGCCGGTCTAGTT
GTATCATATGTTTTTCGCAAGGCCCGTCGCGTCGTCTCAGGTTACGTGAA
AGGTGGAGATATCCTCCTTCCCTCCCTCAACCAGCAATGGCGCGAGCAGG
TTCAAAAAGCGAGAAATTTACCTCCACATATCCTAGGCGTACCCGATTCG
TTTCTGTCTTCACTTCAGAGGGCAGATAGGAAGGAAAAGAGGGAAGGAGA
GAAGGTGGAGTTCTTGGGTGAGACAACACGGGCACTGACTAGAATGGGAT
TGAAGCTGACGCCGTTGGATGCGTTGGATTCCTTGTTGGTAGCTGTGAGG
TGCTTACACAAAGAGGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGGAGTGGGTGGAGAAAAAGATGGAGAAGGAGGAGATGGAGGGGATG
AAGGAGAGGTAGCTGCGACAGCAGCAGCGTCAGGGACAGCAGCAAAAGCA
ATAGTAGGAAATGGAACAGGAGGAGGGAAGGAGGGAAAGAAACGCCTAAC
CTTGACCCCACAACAATCATTGCCGGCTGATGTTCTTTTCCCCTTGCTGG
TCTACGCCTTAGTCCACGCGGACTGTCCCGACGTGTTTTCGTCTTTGTAT
TTGTTGAGACACTTTGCAAGTGGTGACGAGAATGTGGGCGAGAAAGCTTA
CTATATCACCACCTGGGAAGCTGCAGTTGCGCATGTCTTGTACAGGAAGG
ATGAGGAGAAGGCTGGAGAGGGAAGGCGAGGGAGGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGTGCCATGTGTCGCTTGAGGAACTGGGTCC
ATGTTTCACAGCGGAGGAGCACCAGAGGGGTTTGGCTTATTTGGATGAAT
GGTTGGCGTCCGAGAGTGCGATGGAGGAGACGATGGACATCTTGGAACAG
GACGGGTGGTTTTGA back to top
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