NO07G03110.1, NO07G03110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03110.1
Unique NameNO07G03110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1439
Alignment locationchr7:864675..866288 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:864675..866288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03110.1 vs.
Match: EWM27033.1 (Peptidase S54, rhomboid domain protein [Nannochloropsis gaditana])

HSP 1 Score: 489.2 bits (1258), Expect = 1.200e-134
Identity = 272/387 (70.28%), Postives = 305/387 (78.81%), Query Frame = 0 
Query:    2 LPAHWQS-GAPQPQRYK-----PWTSMSSQQQQQPTRLQETLGKIPLCTTLITLLCLILQLCVVFLNWNLNEYSISPAAVVYDREYYRLITSAYFHLGFFHIAMNMLSFVGIGAWLEIKMGTLYFFLTILFSTVLTNGLYIGICFFLAAITHRDQWLFYSSIGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPSRAYPWVLLIIIQLMLPHISFVGHLSGLLVGILQSYGCIAFLFPSAALLNKLEGSSACACLTRFPQYILCPDQADHILPRGSDVLQCCAC--MRSGSPRRFTGSGVSGTAAGNAAAATNASSSSSSPLPTTVQNAGRNSAATAGRGLAQASPTRPGGRGMGGWSRLGEGGNGGGEE-VEIVYDGNQLNNTPRQ 380
            L + W+S  +  P R K      ++++   QQQQPTRLQETL KIPLCTTL TLLCLILQLCVV L WN+N +SIS AAVVYD EYYRL TSAYFHLG FHIAMNMLSFVGIGAWLE++MGT+YFFLTIL+ST+LTN LYIGIC FLAA+T+  QWLFY+S GFSGVIFTLAVLESHSSPPNATRSIMGMCQVP+RAYPWVLLIIIQL+LP ISFVGHLSGLL+G+LQSYGC+AFLFPS+  LN+LE S A AC+TR PQY+LCPD++DH+LPRG DVLQCC C    S SPRRF GSGVSGTAAG+A  A  A  S    LP+TVQN    +A  A     QASPTR G  G GGWSRLG+ G  GGEE VEI YDG Q     RQ
Sbjct:    4 LASQWRSRSSASPHRQKLSAGRGYSTLGPMQQQQPTRLQETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAAVTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPSSGNLNRLERSPAFACMTRCPQYMLCPDESDHVLPRGVDVLQCCPCSSRASSSPRRFVGSGVSGTAAGSAGVAGGAVGS----LPSTVQNP--PTATVAAGATNQASPTRLG--GAGGWSRLGDSGRMGGEEDVEIAYDGQQERKCKRQ 382
The following BLAST results are available for this feature:
BLAST of NO07G03110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27033.11.200e-13470.28Peptidase S54, rhomboid domain protein [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03110NO07G03110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03110.1NO07G03110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03110.1.cds1NO07G03110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03110.1.cds2NO07G03110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03110.1 ID=NO07G03110.1|Name=NO07G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp
ACGCAGAGAGCCCCAGTCCAACGTGCATGCTGCCGGCGCATTGGCAATCA
GGAGCACCACAACCGCAACGCTACAAGCCGTGGACCAGCATGTCTTCCCA
GCAGCAGCAGCAGCCCACCCGTCTGCAGGAGACGCTGGGCAAAATCCCCT
TGTGCACCACGCTGATCACGCTCCTCTGCTTGATCCTGCAACTTTGCGTT
GTTTTCCTCAATTGGAATCTGAATGAATACTCCATCTCGCCTGCTGCCGT
CGTTTACGATCGCGAGTACTACCGGCTCATCACGAGCGCGTATTTCCACC
TGGGGTTCTTTCATATCGCTATGAATATGCTTTCCTTCGTGGGGATTGGT
GCGTGGTTGGAGATCAAGATGGGGACCCTCTATTTCTTCCTAACAATTCT
GTTTTCCACGGTCTTGACCAATGGATTGTATATTGGCATTTGCTTCTTTT
TAGCCGCCATTACTCACAGAGATCAATGGCTTTTTTACTCAAGCATTGGC
TTCTCCGGCGTCATTTTCACGCTCGCCGTCCTCGAGTCCCACTCCTCCCC
ACCCAATGCCACCCGCTCCATCATGGGCATGTGCCAGGTCCCTTCCCGCG
CGTACCCTTGGGTGCTTCTAATCATCATCCAGCTAATGCTTCCACACATT
TCCTTTGTCGGCCACCTTTCGGGCCTCCTGGTCGGAATCTTGCAATCGTA
CGGATGCATTGCCTTCCTTTTCCCTTCTGCGGCACTGCTGAATAAATTGG
AGGGAAGTTCCGCTTGTGCGTGTTTGACGCGGTTTCCTCAGTATATCCTA
TGTCCGGACCAGGCGGATCATATATTGCCGAGGGGATCGGACGTGTTGCA
GTGTTGTGCTTGTATGAGGAGTGGCAGTCCCCGCCGATTTACGGGGAGTG
GAGTCTCTGGAACCGCGGCAGGGAACGCTGCTGCTGCTACTAATGCTTCC
TCGTCCTCGTCCTCGCCCTTGCCCACCACGGTGCAGAATGCCGGCAGGAA
CAGTGCTGCAACCGCTGGAAGAGGACTGGCACAGGCATCGCCCACCCGAC
CGGGAGGGAGAGGGATGGGCGGTTGGAGTCGGTTGGGTGAGGGAGGGAAT
GGAGGAGGGGAAGAGGTGGAGATTGTGTACGATGGGAATCAACTTAATAA
CACTCCGAGGCAAATAGTATTGTAAATTGTGAATGAAAAAAGGAGAAGGC
GGGAGGGCGATGACAAGGCGTTCAAAAAGGGGGCGAGGGCCCGTGACTTG
GGAAGAGAGAATAGAGAGAAAACATCGTTTGTGTGTAATGAGGTGGAGAG
AGGTGCTAATTTGCAGAGCCAGCACCGAACAATAGCAAGGAAAATCATAC
ACACATAAGGGGAATAGAATTTAAGAAAGGGTCTAATTCAACAGTACCAC
GCGCAAAGCCACAAACAACATAAAATCTGTATGGTGAGG
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protein sequence of NO07G03110.1

>NO07G03110.1-protein ID=NO07G03110.1-protein|Name=NO07G03110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MLPAHWQSGAPQPQRYKPWTSMSSQQQQQPTRLQETLGKIPLCTTLITLL
CLILQLCVVFLNWNLNEYSISPAAVVYDREYYRLITSAYFHLGFFHIAMN
MLSFVGIGAWLEIKMGTLYFFLTILFSTVLTNGLYIGICFFLAAITHRDQ
WLFYSSIGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPSRAYPWVLLII
IQLMLPHISFVGHLSGLLVGILQSYGCIAFLFPSAALLNKLEGSSACACL
TRFPQYILCPDQADHILPRGSDVLQCCACMRSGSPRRFTGSGVSGTAAGN
AAAATNASSSSSSPLPTTVQNAGRNSAATAGRGLAQASPTRPGGRGMGGW
SRLGEGGNGGGEEVEIVYDGNQLNNTPRQIVL*
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mRNA from alignment at chr7:864675..866288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03110.1 ID=NO07G03110.1|Name=NO07G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp|location=Sequence derived from alignment at chr7:864675..866288- (Nannochloropsis oceanica)
ACGCAGAGAGCCCCAGTCCAACGTGCATGCTGCCGGCGCATTGGCAATCA
GGAGCACCACAACCGCAACGCTACAAGCCGTGGACCAGCATGTCTTCCCA
GCAGCAGCAGCAGCCCACCCGTCTGCAGGAGACGCTGGGCAAAATCCCCT
TGTGCACCACGCTGATCACGCTCCTCTGCTTGATCCTGCAACTTTGCGTT
GTTTTCCTCAATTGGAATCTGAATGAATACTCCATCTCGCCTGCTGCCGT
CGTTTACGATCGCGAGTACTACCGGCTCATCACGAGCGCGTATTTCCACC
TGGGGTTCTTTCATATCGCTATGAATATGCTTTCCTTCGTGGGGATTGGT
GCGTGGTTGGAGATCAAGATGGGGACCCTCTATTTCTTCCTAACAATTCT
GTTTTCCACGGTCTTGACCAATGGATTGTATATTGGCATTTGCTTCTTTT
TAGGTGCGTAAAGAGAACAAAAGATGAATATGTAAAAGGCAAGAAGAATG
GCTGGGCGAAGAGATCGAATGACTCGGACAGAGGGTTCGATGGAGAGTCT
GGTTGCCCAGGAGGAGACTTTTCTTACGCCTATCCGCCCCTCATCTTCAA
CCCCCCCCTCCCCTCCCGGCACACACAGCCGCCATTACTCACAGAGATCA
ATGGCTTTTTTACTCAAGCATTGGCTTCTCCGGCGTCATTTTCACGCTCG
CCGTCCTCGAGTCCCACTCCTCCCCACCCAATGCCACCCGCTCCATCATG
GGCATGTGCCAGGTCCCTTCCCGCGCGTACCCTTGGGTGCTTCTAATCAT
CATCCAGCTAATGCTTCCACACATTTCCTTTGTCGGCCACCTTTCGGGCC
TCCTGGTCGGAATCTTGCAATCGTACGGATGCATTGCCTTCCTTTTCCCT
TCTGCGGCACTGCTGAATAAATTGGAGGGAAGTTCCGCTTGTGCGTGTTT
GACGCGGTTTCCTCAGTATATCCTATGTCCGGACCAGGCGGATCATATAT
TGCCGAGGGGATCGGACGTGTTGCAGTGTTGTGCTTGTATGAGGAGTGGC
AGTCCCCGCCGATTTACGGGGAGTGGAGTCTCTGGAACCGCGGCAGGGAA
CGCTGCTGCTGCTACTAATGCTTCCTCGTCCTCGTCCTCGCCCTTGCCCA
CCACGGTGCAGAATGCCGGCAGGAACAGTGCTGCAACCGCTGGAAGAGGA
CTGGCACAGGCATCGCCCACCCGACCGGGAGGGAGAGGGATGGGCGGTTG
GAGTCGGTTGGGTGAGGGAGGGAATGGAGGAGGGGAAGAGGTGGAGATTG
TGTACGATGGGAATCAACTTAATAACACTCCGAGGCAAATAGTATTGTAA
ATTGTGAATGAAAAAAGGAGAAGGCGGGAGGGCGATGACAAGGCGTTCAA
AAAGGGGGCGAGGGCCCGTGACTTGGGAAGAGAGAATAGAGAGAAAACAT
CGTTTGTGTGTAATGAGGTGGAGAGAGGTGCTAATTTGCAGAGCCAGCAC
CGAACAATAGCAAGGAAAATCATACACACATAAGGGGAATAGAATTTAAG
AAAGGGTCTAATTCAACAGTACCACGCGCAAAGCCACAAACAACATAAAA
TCTGTATGGTGAGG
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Coding sequence (CDS) from alignment at chr7:864675..866288-

>NO07G03110.1 ID=NO07G03110.1|Name=NO07G03110.1|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at chr7:864675..866288- (Nannochloropsis oceanica)
ATGCTGCCGGCGCATTGGCAATCAGGAGCACCACAACCGCAACGCTACAA
GCCGTGGACCAGCATGTCTTCCCAGCAGCAGCAGCAGCCCACCCGTCTGC
AGGAGACGCTGGGCAAAATCCCCTTGTGCACCACGCTGATCACGCTCCTC
TGCTTGATCCTGCAACTTTGCGTTGTTTTCCTCAATTGGAATCTGAATGA
ATACTCCATCTCGCCTGCTGCCGTCGTTTACGATCGCGAGTACTACCGGC
TCATCACGAGCGCGTATTTCCACCTGGGGTTCTTTCATATCGCTATGAAT
ATGCTTTCCTTCGTGGGGATTGGTGCGTGGTTGGAGATCAAGATGGGGAC
CCTCTATTTCTTCCTAACAATTCTGTTTTCCACGGTCTTGACCAATGGAT
TGTATATTGGCATTTGCTTCTTTTTAGCCGCCATTACTCACAGAGATCAA
TGGCTTTTTTACTCAAGCATTGGCTTCTCCGGCGTCATTTTCACGCTCGC
CGTCCTCGAGTCCCACTCCTCCCCACCCAATGCCACCCGCTCCATCATGG
GCATGTGCCAGGTCCCTTCCCGCGCGTACCCTTGGGTGCTTCTAATCATC
ATCCAGCTAATGCTTCCACACATTTCCTTTGTCGGCCACCTTTCGGGCCT
CCTGGTCGGAATCTTGCAATCGTACGGATGCATTGCCTTCCTTTTCCCTT
CTGCGGCACTGCTGAATAAATTGGAGGGAAGTTCCGCTTGTGCGTGTTTG
ACGCGGTTTCCTCAGTATATCCTATGTCCGGACCAGGCGGATCATATATT
GCCGAGGGGATCGGACGTGTTGCAGTGTTGTGCTTGTATGAGGAGTGGCA
GTCCCCGCCGATTTACGGGGAGTGGAGTCTCTGGAACCGCGGCAGGGAAC
GCTGCTGCTGCTACTAATGCTTCCTCGTCCTCGTCCTCGCCCTTGCCCAC
CACGGTGCAGAATGCCGGCAGGAACAGTGCTGCAACCGCTGGAAGAGGAC
TGGCACAGGCATCGCCCACCCGACCGGGAGGGAGAGGGATGGGCGGTTGG
AGTCGGTTGGGTGAGGGAGGGAATGGAGGAGGGGAAGAGGTGGAGATTGT
GTACGATGGGAATCAACTTAATAACACTCCGAGGCAAATAGTATTGTAA
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Synonyms
Publications