NO07G03100.1, NO07G03100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03100.1
Unique NameNO07G03100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1122
Alignment locationchr7:863501..864622 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:863501..864622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03100.1 vs.
Match: EWM27047.1 (wd repeat-containing protein 82 [Nannochloropsis gaditana])

HSP 1 Score: 581.3 bits (1497), Expect = 2.200e-162
Identity = 283/365 (77.53%), Postives = 314/365 (86.03%), Query Frame = 0 
Query:    4 GSSGMSGLEAVRVQELQRGCVVSGTAPVTCLDYHREGEYLVTAAEDGTVHLINALEGKARKKLFCKKYGVELARFTHHAQSVLCSSRPSASQTASALGTTAHDIRYLSLYDNQYLRFFSGHEARVTALAMSYTDDRFMSASVDGTVRIWTLQQPKCLGQGNIQIGGGGSYSNSSSSPCPVLAEFDPSGLVFAVCAQVQDRHLLKLYDARKFSEGAFENFGISENELRQTLLAQQPTIDPEVARKLVQAPWIDMSFSADGKNLLVSTKGGMTLVIDTYDLQVTRFLTGYKNEKGLNITACYTSDVNHILTGSEEGEVCVFDATEERVMDGVVCRLSGHTGPVRQVKCNPVYEQVASACNHVVLWIT 369
            G+     LEAVRV+EL+RGCVV+G APV+CLDYHREGEYLV  ++D +V LINALEGK RKK+FCKKYGVELARFTHH Q ++CSSR S +Q A+  G++AHDIRYLSLYDNQYLRFFSGHEARVT LAMSYTDDRF+SAS+DGTVRIWTLQQPKCLG G+I  G GGS  N+     PVLAEFDPSGLVFA CAQV DRHLLKLYDARKFSEGAFE+FGISE ELR+TL  QQPTIDPEVARKLVQAPW DM FSADGKNLLVST+ GMTLVIDTYDLQ+TRFLTGY+N  GL+ITACYT D  HILTGSE+G VCVFDA EER MDG+V RL GH  PV+QV+CNPVYEQVAS C+HVVLWI+
Sbjct:   34 GARSGGALEAVRVRELERGCVVAGAAPVSCLDYHREGEYLVATSDDDSVRLINALEGKERKKVFCKKYGVELARFTHHPQGIICSSRQSTNQAAAPTGSSAHDIRYLSLYDNQYLRFFSGHEARVTGLAMSYTDDRFLSASMDGTVRIWTLQQPKCLGLGSIG-GDGGSNHNAQ----PVLAEFDPSGLVFAACAQVHDRHLLKLYDARKFSEGAFESFGISEAELRETLQQQQPTIDPEVARKLVQAPWTDMHFSADGKNLLVSTRAGMTLVIDTYDLQITRFLTGYRNTGGLDITACYTPDAGHILTGSEDGNVCVFDAGEERTMDGIVHRLEGHPRPVQQVRCNPVYEQVASGCSHVVLWIS 393
The following BLAST results are available for this feature:
BLAST of NO07G03100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27047.12.200e-16277.53wd repeat-containing protein 82 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03100NO07G03100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03100.1NO07G03100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03100.1.cds1NO07G03100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03100.1 ID=NO07G03100.1|Name=NO07G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1122bp
ATGACGTGCGGAAGTAGCGGGATGAGTGGCCTGGAAGCCGTCCGGGTGCA
GGAGCTGCAACGTGGCTGCGTGGTTTCGGGGACGGCTCCAGTCACTTGCT
TGGATTATCATCGGGAAGGTGAGTATTTAGTGACCGCGGCGGAGGACGGA
ACCGTGCACCTGATAAATGCCTTGGAGGGCAAAGCGCGGAAGAAACTATT
TTGCAAGAAGTATGGGGTGGAGCTGGCCAGGTTCACGCATCATGCCCAGA
GTGTTTTGTGCAGTAGCCGGCCCTCGGCAAGCCAGACAGCATCCGCCTTG
GGAACGACGGCGCATGACATTCGTTATCTGTCCCTGTACGACAACCAGTA
CTTGCGTTTTTTTTCGGGCCATGAAGCGCGAGTGACAGCGTTGGCCATGT
CTTACACAGACGATCGATTTATGAGCGCATCGGTTGATGGTACCGTTCGG
ATATGGACATTGCAGCAACCCAAGTGCTTGGGCCAGGGCAACATTCAGAT
AGGTGGTGGGGGAAGCTACAGCAACAGCAGCAGTAGTCCTTGTCCTGTTT
TAGCGGAGTTTGACCCGTCGGGGTTGGTTTTTGCAGTGTGCGCGCAGGTG
CAAGACAGACATTTGTTGAAATTGTATGACGCGAGGAAGTTCAGTGAAGG
GGCTTTTGAAAATTTCGGGATCTCTGAGAATGAGTTACGACAGACGTTGC
TTGCACAACAACCAACGATTGACCCTGAGGTGGCTCGTAAGTTGGTACAG
GCTCCGTGGATTGACATGAGCTTTAGCGCGGACGGGAAGAATTTACTGGT
GTCGACCAAGGGAGGGATGACGCTTGTGATTGACACTTACGATTTGCAAG
TGACGAGGTTTCTGACCGGCTATAAGAATGAGAAGGGATTGAATATCACA
GCTTGTTATACCTCGGATGTGAACCACATTTTGACGGGCTCGGAGGAGGG
GGAGGTATGTGTGTTTGATGCGACGGAGGAGAGGGTAATGGACGGGGTGG
TGTGTCGATTGAGTGGGCATACAGGCCCTGTGAGGCAGGTGAAGTGTAAC
CCGGTCTACGAGCAGGTGGCGAGTGCGTGTAACCATGTGGTGTTGTGGAT
AACGCCCCCACGAGGGAAATAA
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protein sequence of NO07G03100.1

>NO07G03100.1-protein ID=NO07G03100.1-protein|Name=NO07G03100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MTCGSSGMSGLEAVRVQELQRGCVVSGTAPVTCLDYHREGEYLVTAAEDG
TVHLINALEGKARKKLFCKKYGVELARFTHHAQSVLCSSRPSASQTASAL
GTTAHDIRYLSLYDNQYLRFFSGHEARVTALAMSYTDDRFMSASVDGTVR
IWTLQQPKCLGQGNIQIGGGGSYSNSSSSPCPVLAEFDPSGLVFAVCAQV
QDRHLLKLYDARKFSEGAFENFGISENELRQTLLAQQPTIDPEVARKLVQ
APWIDMSFSADGKNLLVSTKGGMTLVIDTYDLQVTRFLTGYKNEKGLNIT
ACYTSDVNHILTGSEEGEVCVFDATEERVMDGVVCRLSGHTGPVRQVKCN
PVYEQVASACNHVVLWITPPRGK*
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mRNA from alignment at chr7:863501..864622+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03100.1 ID=NO07G03100.1|Name=NO07G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1122bp|location=Sequence derived from alignment at chr7:863501..864622+ (Nannochloropsis oceanica)
ATGACGTGCGGAAGTAGCGGGATGAGTGGCCTGGAAGCCGTCCGGGTGCA
GGAGCTGCAACGTGGCTGCGTGGTTTCGGGGACGGCTCCAGTCACTTGCT
TGGATTATCATCGGGAAGGTGAGTATTTAGTGACCGCGGCGGAGGACGGA
ACCGTGCACCTGATAAATGCCTTGGAGGGCAAAGCGCGGAAGAAACTATT
TTGCAAGAAGTATGGGGTGGAGCTGGCCAGGTTCACGCATCATGCCCAGA
GTGTTTTGTGCAGTAGCCGGCCCTCGGCAAGCCAGACAGCATCCGCCTTG
GGAACGACGGCGCATGACATTCGTTATCTGTCCCTGTACGACAACCAGTA
CTTGCGTTTTTTTTCGGGCCATGAAGCGCGAGTGACAGCGTTGGCCATGT
CTTACACAGACGATCGATTTATGAGCGCATCGGTTGATGGTACCGTTCGG
ATATGGACATTGCAGCAACCCAAGTGCTTGGGCCAGGGCAACATTCAGAT
AGGTGGTGGGGGAAGCTACAGCAACAGCAGCAGTAGTCCTTGTCCTGTTT
TAGCGGAGTTTGACCCGTCGGGGTTGGTTTTTGCAGTGTGCGCGCAGGTG
CAAGACAGACATTTGTTGAAATTGTATGACGCGAGGAAGTTCAGTGAAGG
GGCTTTTGAAAATTTCGGGATCTCTGAGAATGAGTTACGACAGACGTTGC
TTGCACAACAACCAACGATTGACCCTGAGGTGGCTCGTAAGTTGGTACAG
GCTCCGTGGATTGACATGAGCTTTAGCGCGGACGGGAAGAATTTACTGGT
GTCGACCAAGGGAGGGATGACGCTTGTGATTGACACTTACGATTTGCAAG
TGACGAGGTTTCTGACCGGCTATAAGAATGAGAAGGGATTGAATATCACA
GCTTGTTATACCTCGGATGTGAACCACATTTTGACGGGCTCGGAGGAGGG
GGAGGTATGTGTGTTTGATGCGACGGAGGAGAGGGTAATGGACGGGGTGG
TGTGTCGATTGAGTGGGCATACAGGCCCTGTGAGGCAGGTGAAGTGTAAC
CCGGTCTACGAGCAGGTGGCGAGTGCGTGTAACCATGTGGTGTTGTGGAT
AACGCCCCCACGAGGGAAATAA
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Coding sequence (CDS) from alignment at chr7:863501..864622+

>NO07G03100.1 ID=NO07G03100.1|Name=NO07G03100.1|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at chr7:863501..864622+ (Nannochloropsis oceanica)
ATGACGTGCGGAAGTAGCGGGATGAGTGGCCTGGAAGCCGTCCGGGTGCA
GGAGCTGCAACGTGGCTGCGTGGTTTCGGGGACGGCTCCAGTCACTTGCT
TGGATTATCATCGGGAAGGTGAGTATTTAGTGACCGCGGCGGAGGACGGA
ACCGTGCACCTGATAAATGCCTTGGAGGGCAAAGCGCGGAAGAAACTATT
TTGCAAGAAGTATGGGGTGGAGCTGGCCAGGTTCACGCATCATGCCCAGA
GTGTTTTGTGCAGTAGCCGGCCCTCGGCAAGCCAGACAGCATCCGCCTTG
GGAACGACGGCGCATGACATTCGTTATCTGTCCCTGTACGACAACCAGTA
CTTGCGTTTTTTTTCGGGCCATGAAGCGCGAGTGACAGCGTTGGCCATGT
CTTACACAGACGATCGATTTATGAGCGCATCGGTTGATGGTACCGTTCGG
ATATGGACATTGCAGCAACCCAAGTGCTTGGGCCAGGGCAACATTCAGAT
AGGTGGTGGGGGAAGCTACAGCAACAGCAGCAGTAGTCCTTGTCCTGTTT
TAGCGGAGTTTGACCCGTCGGGGTTGGTTTTTGCAGTGTGCGCGCAGGTG
CAAGACAGACATTTGTTGAAATTGTATGACGCGAGGAAGTTCAGTGAAGG
GGCTTTTGAAAATTTCGGGATCTCTGAGAATGAGTTACGACAGACGTTGC
TTGCACAACAACCAACGATTGACCCTGAGGTGGCTCGTAAGTTGGTACAG
GCTCCGTGGATTGACATGAGCTTTAGCGCGGACGGGAAGAATTTACTGGT
GTCGACCAAGGGAGGGATGACGCTTGTGATTGACACTTACGATTTGCAAG
TGACGAGGTTTCTGACCGGCTATAAGAATGAGAAGGGATTGAATATCACA
GCTTGTTATACCTCGGATGTGAACCACATTTTGACGGGCTCGGAGGAGGG
GGAGGTATGTGTGTTTGATGCGACGGAGGAGAGGGTAATGGACGGGGTGG
TGTGTCGATTGAGTGGGCATACAGGCCCTGTGAGGCAGGTGAAGTGTAAC
CCGGTCTACGAGCAGGTGGCGAGTGCGTGTAACCATGTGGTGTTGTGGAT
AACGCCCCCACGAGGGAAATAA
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Synonyms
Publications