NO07G03090.3, NO07G03090.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03090.3
Unique NameNO07G03090.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2739
Alignment locationchr7:861644..864667 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:861644..864667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G03090.3 vs.
Match: EWM27048.1 (hypothetical protein Naga_100056g41 [Nannochloropsis gaditana])

HSP 1 Score: 384.0 bits (985), Expect = 5.900e-103
Identity = 214/412 (51.94%), Postives = 280/412 (67.96%), Query Frame = 0
Query:   23 LKKFAKWADKGTGINPFLPPRSTTSSTAAKAGGLVLSLGLLAVRLPLLCITGSWLFLVSLLTTPWFDILTGSLLLAACYVNHAPNLHTGGSPTPEQTSITLLALGVSLGLLPPLHRLFSLLLLRPALAAVLKTMGISFIEQHANLRKLGLRPPGHKPLVTRVGATIQPGDLLLSNHTSALDILYFASRSLPLFSCFTLAPEIRFSSLSAFGAVWKAGKVPNKA---GQGVTLDKVLAEAKRERRSLVVFPEMVRSNGEGILAFPKGVLDGL----AGAGEGGGGAAGGSVGVHLFGFSAVKGDLLATHTVGSSLRFFFRILCRPRTTVHVTYVCARDVPSYPGSRCSSGNKSTSSTPAQWSEEIRGLLAGMLGRPKLGLGYDDFVTFGKYYAAVQIKDDKAAAALASAREKL 428
            ++KF KWADKGTGINPFLP R   SS  +K    +L++ L+AVRLPL+ +T +W   +SLLT PWFDILTG+L     Y++  P+     + +P+ T   LL LG    L  P+ R+FS L LRP +  +L  +G+S+ EQHANLRKLGLRPPGH+P  +R+G TIQ GD+LLSNHTS L++L+F SR LP FS   +AP  +   L+   A W+AG VP KA   G G  L  + AEAKR+ +++VVFPE  RSNG+G+L F +GVLDG     A  G+  GG  GG V VH+FGFSA KG+++ THTVGS   F+ ++L R RTTV+V+YV A D+   P S  + G+  +S TP   SEE+R LLA MLGRPKL LGY+DF +F KYYAA++  D++ AAALA AREK+
Sbjct:    1 MEKFTKWADKGTGINPFLPQRRAASSLPSKVASGLLAIVLIAVRLPLILLTLTWFLALSLLTKPWFDILTGALFTTYAYLDEGPSKPM--TLSPQHTGFFLLVLGSLTALSVPIRRVFSFLTLRPPVYLLLSILGVSYREQHANLRKLGLRPPGHRPHDSRIGRTIQAGDILLSNHTSPLEVLFFISRFLPAFSALAVAPVAQGRLLTPLQAWWRAGLVPPKAFETGTGQALSSLAAEAKRQGQAVVVFPETARSNGDGVLVFQRGVLDGTDAKEAKGGKLTGGERGGGVNVHIFGFSAPKGEVMPTHTVGSVFGFYLQLLSRWRTTVNVSYVGAPDLLLQPTS--AKGSGGSSRTPVYSSEELRSLLANMLGRPKLNLGYEDFCSFRKYYAAIRAGDEERAAALARAREKM 408          
The following BLAST results are available for this feature:
BLAST of NO07G03090.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27048.15.900e-10351.94hypothetical protein Naga_100056g41 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03090NO07G03090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03090.3NO07G03090.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03090.3.cds1NO07G03090.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03090.3.cds2NO07G03090.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03090.3 ID=NO07G03090.3|Name=NO07G03090.3|organism=Nannochloropsis oceanica|type=mRNA|length=2739bp
TTCATTTGTTGCATTCTTTTCATTCATTCATCCCATTTATTTAATTTATT
TCCCTCGTGGGGGCGTTATCCACAACACCACATGGTTACACGCACTCGCC
ACCTGCTCGTAGACCGGGTTACACTTCACCTGCCTCACAGGGCCTGTATG
CCCACTCAATCGACACACCACCCCGTCCATTACCCTCTCCTCCGTCGCAT
CAAACACACATACCTCCCCCTCCTCCGAGCCCGTCAAAATGTGGTTCACA
TCCGAGGTATAACAAGCTGTGATATTCAATCCCTTCTCATTCTTATAGCC
GGTCAGAAACCTCGTCACTTGCAAATCGTAAGTGTCAATCACAAGCGTCA
TCCCTCCCTTGGTCGACACCAGTAAATTCTTCCCGTCCGCGCTAAAGCTC
ATGTCAATCCACGGAGCCTGTACCAACTTACGAGCCACCTCAGGGTCAAT
CGTTGGTTGTTGTGCAAGCAACGTCTGTCGTAACTCATTCTCAGAGATCC
CGAAATTTTCAAAAGCCCCTTCACTGAACTTCCTCGCGTCATACAATTTC
AACAAATGTCTGTCTTGCACCTGCGCGCACACTGCAAAAACCAACCCCGA
CGGGTCAAACTCCGCTAAAACAGGACAAGGACTACTGCTGCTGTTGCTGT
AGCTTCCCCCACCACCTATCTGAATGTTGCCCTGGCCCAAGCACTTGGGT
TGCTGCAATGTCCATATCCGAACGGTACCATCAACCGATGCGCTCATAAA
TCGATCGTCTGTGTAAGACATGGCCAACGCTGTCACTCGCGCTTCATGGC
CCGAAAAAAAACGCAAGTACTGGTTGTCGTACAGGGACAGATAACGAATG
TCATGCGCCGTCGTTCCCAAGGCGGATGCTGTCTGGCTTGCCGAGGGCCG
GCTACTGCACAAAACACTCTGGGCATGATGCGTGAACCTGGCCAGCTCCA
CCCCATACTTCTTGCAAAATAGTTTCTTCCGCGCTTTGCCCTCCAAGGCA
TTTATCAGGTGCACGGTTCCGTCCTCCGCCGCGGTCACTAAATACTCACC
TTCCCGATGATAATCCAAGCAAGTGACTGGAGCCGTCCCCGAAACCACGC
AGCCACGTTGCAGCTCCTGCACCCGGACGGCTTCCAGGCCACTCATCCCG
CTACTTCCGCACGTCATCGTCAATTTCCAACTGCGTAGGTGTGTGAGGTG
GTATACGTGTGGTTTAGAATGGCCAAATTGCTGTGTGGAAGAAGTAAGGC
TTTCATCATCAAAGCGGCATTCTTCATCTGCCACTTTGTACTTCGGCACA
TCCACCACTCACAGCCCTTCCATCCAATTCACACCCCAGCACCAAAGGTA
AAACGACAAGGAAGCTTATCGGCCCGCTCGCCAGCTTGCCGCAGCCCTAG
CTTCCAGTCAATGGAGGTCAGTTAGCTCCTGTACGCATGCCCCAACATGC
CCTCCCTCTCCATCCTCATTTCTCTCATTTCCCCTTTCATTTGTGTTCAT
CCTTGAAGAAATTCGCCAAGTGGGCCGATAAAGGTACGGGTATCAACCCT
TTTTTGCCACCACGCTCCACCACCTCCTCCACGGCAGCCAAGGCAGGGGG
CCTGGTTCTCAGTCTCGGCCTGCTCGCCGTGCGCCTGCCCCTCCTCTGTA
TCACAGGCAGCTGGCTCTTCCTCGTCAGTCTTCTCACCACCCCTTGGTTC
GACATTTTGACTGGCAGTCTCCTTCTTGCCGCCTGCTATGTCAATCACGC
ACCAAACCTACACACCGGAGGCTCTCCCACTCCCGAGCAAACAAGCATCA
CTCTCCTAGCCCTAGGAGTAAGCCTGGGCCTCCTCCCCCCCCTCCATCGT
CTTTTCTCCCTCCTCCTCCTCCGCCCAGCCCTTGCCGCTGTCCTCAAAAC
TATGGGCATATCCTTTATTGAACAACATGCGAATTTACGGAAGCTCGGTT
TGAGGCCACCAGGGCACAAGCCTCTAGTTACACGCGTGGGTGCGACCATT
CAACCCGGGGACCTCCTCCTGAGCAATCACACCTCTGCCTTGGACATCCT
TTATTTTGCCAGTCGTTCCTTACCGTTGTTTTCATGTTTCACGCTTGCCC
CCGAGATAAGATTTAGCTCCCTGTCGGCTTTCGGAGCGGTGTGGAAGGCA
GGCAAAGTACCTAATAAAGCAGGCCAAGGAGTGACTTTGGACAAGGTCTT
AGCAGAAGCCAAGAGGGAGAGAAGGTCATTGGTAGTGTTTCCGGAGATGG
TACGATCGAATGGGGAAGGAATATTGGCCTTTCCCAAGGGAGTGTTGGAC
GGTTTAGCGGGGGCAGGGGAGGGAGGGGGAGGAGCAGCAGGAGGAAGCGT
AGGAGTGCATTTGTTTGGGTTTAGTGCCGTCAAAGGCGACCTTCTTGCCA
CGCATACCGTTGGTAGCAGCTTGCGTTTCTTTTTCAGGATCCTCTGCCGA
CCGCGAACCACCGTCCACGTCACTTACGTCTGCGCGCGAGACGTGCCTTC
TTATCCCGGAAGCCGCTGCAGCAGTGGGAATAAAAGCACCAGCAGCACAC
CAGCGCAATGGAGTGAGGAAATTAGAGGCCTTCTGGCCGGTATGTTGGGA
CGACCTAAGCTTGGGTTGGGGTACGATGATTTCGTAACCTTTGGTAAATA
TTATGCGGCAGTTCAGATTAAAGATGATAAAGCAGCAGCGGCGTTGGCGA
GTGCGAGGGAGAAGCTGTAGCGATGAGGAAGGGAGGGGG
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protein sequence of NO07G03090.3

>NO07G03090.3-protein ID=NO07G03090.3-protein|Name=NO07G03090.3|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MPQHALPLHPHFSHFPFHLCSSLKKFAKWADKGTGINPFLPPRSTTSSTA
AKAGGLVLSLGLLAVRLPLLCITGSWLFLVSLLTTPWFDILTGSLLLAAC
YVNHAPNLHTGGSPTPEQTSITLLALGVSLGLLPPLHRLFSLLLLRPALA
AVLKTMGISFIEQHANLRKLGLRPPGHKPLVTRVGATIQPGDLLLSNHTS
ALDILYFASRSLPLFSCFTLAPEIRFSSLSAFGAVWKAGKVPNKAGQGVT
LDKVLAEAKRERRSLVVFPEMVRSNGEGILAFPKGVLDGLAGAGEGGGGA
AGGSVGVHLFGFSAVKGDLLATHTVGSSLRFFFRILCRPRTTVHVTYVCA
RDVPSYPGSRCSSGNKSTSSTPAQWSEEIRGLLAGMLGRPKLGLGYDDFV
TFGKYYAAVQIKDDKAAAALASAREKL*
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mRNA from alignment at chr7:861644..864667-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03090.3 ID=NO07G03090.3|Name=NO07G03090.3|organism=Nannochloropsis oceanica|type=mRNA|length=3024bp|location=Sequence derived from alignment at chr7:861644..864667- (Nannochloropsis oceanica)
TTCATTTGTTGCATTCTTTTCATTCATTCATCCCATTTATTTAATTTATT TCCCTCGTGGGGGCGTTATCCACAACACCACATGGTTACACGCACTCGCC ACCTGCTCGTAGACCGGGTTACACTTCACCTGCCTCACAGGGCCTGTATG CCCACTCAATCGACACACCACCCCGTCCATTACCCTCTCCTCCGTCGCAT CAAACACACATACCTCCCCCTCCTCCGAGCCCGTCAAAATGTGGTTCACA TCCGAGGTATAACAAGCTGTGATATTCAATCCCTTCTCATTCTTATAGCC GGTCAGAAACCTCGTCACTTGCAAATCGTAAGTGTCAATCACAAGCGTCA TCCCTCCCTTGGTCGACACCAGTAAATTCTTCCCGTCCGCGCTAAAGCTC ATGTCAATCCACGGAGCCTGTACCAACTTACGAGCCACCTCAGGGTCAAT CGTTGGTTGTTGTGCAAGCAACGTCTGTCGTAACTCATTCTCAGAGATCC CGAAATTTTCAAAAGCCCCTTCACTGAACTTCCTCGCGTCATACAATTTC AACAAATGTCTGTCTTGCACCTGCGCGCACACTGCAAAAACCAACCCCGA CGGGTCAAACTCCGCTAAAACAGGACAAGGACTACTGCTGCTGTTGCTGT AGCTTCCCCCACCACCTATCTGAATGTTGCCCTGGCCCAAGCACTTGGGT TGCTGCAATGTCCATATCCGAACGGTACCATCAACCGATGCGCTCATAAA TCGATCGTCTGTGTAAGACATGGCCAACGCTGTCACTCGCGCTTCATGGC CCGAAAAAAAACGCAAGTACTGGTTGTCGTACAGGGACAGATAACGAATG TCATGCGCCGTCGTTCCCAAGGCGGATGCTGTCTGGCTTGCCGAGGGCCG GCTACTGCACAAAACACTCTGGGCATGATGCGTGAACCTGGCCAGCTCCA CCCCATACTTCTTGCAAAATAGTTTCTTCCGCGCTTTGCCCTCCAAGGCA TTTATCAGGTGCACGGTTCCGTCCTCCGCCGCGGTCACTAAATACTCACC TTCCCGATGATAATCCAAGCAAGTGACTGGAGCCGTCCCCGAAACCACGC AGCCACGTTGCAGCTCCTGCACCCGGACGGCTTCCAGGCCACTCATCCCG CTACTTCCGCACGTCATCGTCAATTTCCAACTGCGTAGGTGTGTGAGGTG GTATACGTGTGGTTTAGAATGGCCAAATTGCTGTGTGGAAGAAGTAAGGC TTTCATCATCAAAGCGGCATTCTTCATCTGCCACTTTGTACTTCGGCACA TCCACCACTCACAGCCCTTCCATCCAATTCACACCCCAGCACCAAAGGTA AAACGACAAGGAAGCTTATCGGCCCGCTCGCCAGCTTGCCGCAGCCCTAG CTTCCAGTCAATGGAGGTCAGTTAGCTCCTGTACGCATGCCCCAACATGC CCTCCCTCTCCATCCTCATTTCTCTCATTTCCCCTTTCATTTGTGTTCAT CCTTGAAGAAATTCGCCAAGTGGGCCGATAAAGGTACGGGTATCAACCCT TTTTTGCCACCACGCTCCACCACCTCCTCCACGGCAGCCAAGGCAGGGGG CCTGGTTCTCAGTCTCGGCCTGCTCGCCGTGCGCCTGCCCCTCCTCTGTA TCACAGGCAGCTGGCTCTTCCTCGTCAGTCTTCTCACCACCCCTTGGTTC GACATTTTGACTGGCAGTCTCCTTCTTGCCGCCTGCTATGTCAATCACGC ACCAAACCTACACACCGGAGGCTCTCCCACTCCCGAGCAAACAAGCATCA CTCTCCTAGCCCTAGGAGTAAGCCTGGGCCTCCTCCCCCCCCTCCATCGT CTTTTCTCCCTCCTCCTCCTCCGCCCAGCCCTTGCCGCTGTCCTCAAAAC TATGGGCATATCCTTTATTGAACAACATGCGAATTTACGGAAGCTCGGTT TGAGGCCACCAGGGCACAAGCCTCTAGTTACACGCGTGGGTGCGACCATT CAACCCGGGGACCTCCTCCTGAGCAATCACACCTCTGCCTTGGACATCCT TTATTTTGCCAGTCGTTCCTTACCGTTGTTTTCATGTTTCACGCTTGCCC CCGAGATAAGATTTAGCTCCCTGTCGGCTTTCGGAGCGGTGTGGAAGGCA GGCAAAGTACCTAATAAAGCAGGCCAAGGAGTGACTTTGGACAAGGTCTT AGCAGAAGCCAAGAGGGAGAGAAGGTCATTGGTAGTGTTTCCGGAGATGG TACGATCGAATGGGGAAGGAATATTGGCCTTTCCCAAGGGAGTGTTGGAC GGTTTAGCGGGGGCAGGGGAGGGAGGGGGAGGAGCAGCAGGAGGAAGCGT AGGAGTGCATTTGTTTGGGTTTAGGTGCGTTGTGGGAGAGGAGGGGGAAT ACGGGAGGGAGAGAAGATGAAAGCAAGCTTGGAATACACCGTGATGCAGC TGCGGGGGTCAAGCATATTATGCACTCCCGTAAACATTCTCTTCGACGGA AAGGGTCATAGAAAGCGATGCCAGTGGCGCCTGAGGAGGGTGGGTTGGGA GACGTTGCCTTAATGCTGCCTATGGATGTCATGTCTTGAACATGGATTCC ACTACGTTCTTCCTATCTTTCTTCTCTCATACACATGCATATGTCTTCCC ACACGACAGTGCCGTCAAAGGCGACCTTCTTGCCACGCATACCGTTGGTA GCAGCTTGCGTTTCTTTTTCAGGATCCTCTGCCGACCGCGAACCACCGTC CACGTCACTTACGTCTGCGCGCGAGACGTGCCTTCTTATCCCGGAAGCCG CTGCAGCAGTGGGAATAAAAGCACCAGCAGCACACCAGCGCAATGGAGTG AGGAAATTAGAGGCCTTCTGGCCGGTATGTTGGGACGACCTAAGCTTGGG TTGGGGTACGATGATTTCGTAACCTTTGGTAAATATTATGCGGCAGTTCA GATTAAAGATGATAAAGCAGCAGCGGCGTTGGCGAGTGCGAGGGAGAAGC TGTAGCGATGAGGAAGGGAGGGGG
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Coding sequence (CDS) from alignment at chr7:861644..864667-

>NO07G03090.3 ID=NO07G03090.3|Name=NO07G03090.3|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at chr7:861644..864667- (Nannochloropsis oceanica)
ATGCCCCAACATGCCCTCCCTCTCCATCCTCATTTCTCTCATTTCCCCTT
TCATTTGTGTTCATCCTTGAAGAAATTCGCCAAGTGGGCCGATAAAGGTA
CGGGTATCAACCCTTTTTTGCCACCACGCTCCACCACCTCCTCCACGGCA
GCCAAGGCAGGGGGCCTGGTTCTCAGTCTCGGCCTGCTCGCCGTGCGCCT
GCCCCTCCTCTGTATCACAGGCAGCTGGCTCTTCCTCGTCAGTCTTCTCA
CCACCCCTTGGTTCGACATTTTGACTGGCAGTCTCCTTCTTGCCGCCTGC
TATGTCAATCACGCACCAAACCTACACACCGGAGGCTCTCCCACTCCCGA
GCAAACAAGCATCACTCTCCTAGCCCTAGGAGTAAGCCTGGGCCTCCTCC
CCCCCCTCCATCGTCTTTTCTCCCTCCTCCTCCTCCGCCCAGCCCTTGCC
GCTGTCCTCAAAACTATGGGCATATCCTTTATTGAACAACATGCGAATTT
ACGGAAGCTCGGTTTGAGGCCACCAGGGCACAAGCCTCTAGTTACACGCG
TGGGTGCGACCATTCAACCCGGGGACCTCCTCCTGAGCAATCACACCTCT
GCCTTGGACATCCTTTATTTTGCCAGTCGTTCCTTACCGTTGTTTTCATG
TTTCACGCTTGCCCCCGAGATAAGATTTAGCTCCCTGTCGGCTTTCGGAG
CGGTGTGGAAGGCAGGCAAAGTACCTAATAAAGCAGGCCAAGGAGTGACT
TTGGACAAGGTCTTAGCAGAAGCCAAGAGGGAGAGAAGGTCATTGGTAGT
GTTTCCGGAGATGGTACGATCGAATGGGGAAGGAATATTGGCCTTTCCCA
AGGGAGTGTTGGACGGTTTAGCGGGGGCAGGGGAGGGAGGGGGAGGAGCA
GCAGGAGGAAGCGTAGGAGTGCATTTGTTTGGGTTTAGTGCCGTCAAAGG
CGACCTTCTTGCCACGCATACCGTTGGTAGCAGCTTGCGTTTCTTTTTCA
GGATCCTCTGCCGACCGCGAACCACCGTCCACGTCACTTACGTCTGCGCG
CGAGACGTGCCTTCTTATCCCGGAAGCCGCTGCAGCAGTGGGAATAAAAG
CACCAGCAGCACACCAGCGCAATGGAGTGAGGAAATTAGAGGCCTTCTGG
CCGGTATGTTGGGACGACCTAAGCTTGGGTTGGGGTACGATGATTTCGTA
ACCTTTGGTAAATATTATGCGGCAGTTCAGATTAAAGATGATAAAGCAGC
AGCGGCGTTGGCGAGTGCGAGGGAGAAGCTGTAG
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Synonyms
Publications