NO07G03080.1, NO07G03080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03080.1
Unique NameNO07G03080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1684
Alignment locationchr7:859492..861643 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:859492..861643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03080.1 vs.
Match: XP_005852499.1 (light harvesting complex protein, partial [Nannochloropsis gaditana CCMP526]; EKU23332.1 light harvesting complex protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 396.4 bits (1017), Expect = 7.200e-107
Identity = 193/231 (83.55%), Postives = 208/231 (90.04%), Query Frame = 0 
Query:   34 RALLCLALPALASAFVSRAPTAVTRASAPVKGRTVVMESISDFLKFDAKLGELEVTKAGVSAPFGFFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDFETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIVKSIFG 265
            R L C+ALPALA+AF++RAPT V    +  KGRTVVMESIS+FLKFDAKLGELEVTKAGVSAPFGFFDPLNFYGG++ R KKK RESELKHGRVAMMAV GIF QE+WHPLLAGDDFETAL QYYGVTEFIPDFG GA+FVLSLFEFKSIA GWDP+EETLK PKIAGMRDDYVAGDLQYDPLGFCPDDDE F+ MRTKELNNGRMAMIA IGII QE+ TGVP+VKS+FG
Sbjct:  492 RLLFCVALPALATAFLARAPTTVPHTHSVRKGRTVVMESISEFLKFDAKLGELEVTKAGVSAPFGFFDPLNFYGGKTIRQKKKLRESELKHGRVAMMAVLGIFVQELWHPLLAGDDFETALSQYYGVTEFIPDFGAGALFVLSLFEFKSIAMGWDPVEETLKEPKIAGMRDDYVAGDLQYDPLGFCPDDDEAFVRMRTKELNNGRMAMIAAIGIIGQELATGVPVVKSLFG 722
The following BLAST results are available for this feature:
BLAST of NO07G03080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852499.17.200e-10783.55light harvesting complex protein, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03080NO07G03080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03080.1NO07G03080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03080.1.cds1NO07G03080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03080.1.cds2NO07G03080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03080.1.cds3NO07G03080.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03080.1 ID=NO07G03080.1|Name=NO07G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp
GGGAGGGAGGGATGAGGGGAGGGGGGACATGTAGAGTTAGTGAGAAGCGG
GTAGTAAGTGAGGAGCAGGTAGATGCATGTGTAGAGTAGAAGAAGGCAAG
CGAAACCGACTGAATGCATAGCATCAAGTAACGTTTAAATGCACACAATC
AGTGGATCGACTAGCAGCTGTAATAGCACGAGCACCAGGGGCCGAGATCG
GAGGGGGGAGAGGTGGAGGAGGGAGAATTATAAGGAAGAAAACCCGGTAG
ACCTTGGTGTAATCACCAGGATACGGGCGCCTTAATAAAGAAGTAAAATA
AAAAGTGCTGCCCAAGGCTCACTGGAATGGGCCGGGCAAAGAACATGAAC
ATCGTCGGTCAGCGAGAAGAAGCAGAAGCAGAGAAGCAGGGTGAGGTGGT
CATAGTTCTTTTCTGCCGCTATCCTACAATCCTGAACTGGCTTTACGCCG
TCCTTTGTTTTCCGCCCCGTCCTTTTGACATTAGTCCTTTCTTTATTGCG
CAGAGCGGCGGCACAAAGACGACATTTTTGCTGTCATTGTGCTGGTAGAT
GGCCTGAATTCGAGCGTGCGTGGCCGTCGACGTAGTCGAAGCCCGGGCCG
ATCTATGTGCACGACGCACATACAGCAATGCACGCGTCGTTGTTCTGGAA
TGCACGACAAAATCTCACTAGCTCCCACCTCAAAAATATCCACATCTCTT
ATAGTAATTCTACCATGATCGCTACGCGTGCCTTGCTCTGCCTGGCCCTA
CCGGCCTTGGCCTCCGCCTTCGTTAGCCGTGCCCCCACTGCTGTGACCCG
CGCCTCTGCTCCTGTGAAGGGCCGCACAGTGGTAATGGAGTCCATCTCGG
ACTTCCTCAAGTTTGATGCGAAGCTCGGCGAGCTGGAAGTGACCAAGGCT
GGCGTCTCCGCTCCCTTCGGTTTCTTCGATCCCTTAAACTTTTACGGCGG
CCAAAGCACCCGCACCAAGAAGAAGTTCCGTGAGTCAGAGCTCAAGCACG
GCCGCGTCGCTATGATGGCCGTGGCTGGCATTTTTTTTCAAGAAATCTGG
CACCCGTTGTTGGCGGGGGATGACTTCGAGACAGCGCTGGACCAATACTA
TGGAGTGACGGAGTTTATACCTGATTTTGGCCTGGGGGCGATGTTTGTGT
TGTCGTTGTTCGAATTCAAGAGCATTGCCAAGGGCTGGGACCCGATTGAA
GAGACGCTTAAGAACCCAAAAATTGCTGGCATGCGCGACGACTACGTGGC
AGGTGATTTACAGTACGATCCCCTTGGCTTCTGCCCTGACGATGACGAGG
ACTTTATCACCATGCGCACGAAGGAGCTGAATAATGGCCGCATGGCGATG
ATTGCCGTCATTGGCATTATTGCCCAGGAGATTGTGACGGGCGTCCCTAT
TGTTAAGTCCATCTTTGGATAAATATCTGATGATGTGTGTGTGTGTGCGT
GAGAAAGAGAAAGCAAGAAGGGACTCAAAAAAAGAAAATAAAAGAGATAT
GGAGAAGCAGTGTATGTGTGTGTGTTCGTATGTTTGTTTGAAAATATGCT
GTGATAAAACTGGTTTGTGTGGGTCCGTGCGTTGGCAGTGGCGTCATATG
AACTTGTGTTGAGTGTGTTTTATCTTAACAAAGAAGCAGACACAAGAGAT
TAAGAAGAGTAAATGAAATCAGGCCAAATGCTAT
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protein sequence of NO07G03080.1

>NO07G03080.1-protein ID=NO07G03080.1-protein|Name=NO07G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MHASLFWNARQNLTSSHLKNIHISYSNSTMIATRALLCLALPALASAFVS
RAPTAVTRASAPVKGRTVVMESISDFLKFDAKLGELEVTKAGVSAPFGFF
DPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDF
ETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIA
GMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQ
EIVTGVPIVKSIFG*
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mRNA from alignment at chr7:859492..861643-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03080.1 ID=NO07G03080.1|Name=NO07G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2152bp|location=Sequence derived from alignment at chr7:859492..861643- (Nannochloropsis oceanica)
GGGAGGGAGGGATGAGGGGAGGGGGGACATGTAGAGTTAGTGAGAAGCGG
GTAGTAAGTGAGGAGCAGGTAGATGCATGTGTAGAGTAGAAGAAGGCAAG
CGAAACCGACTGAATGCATAGCATCAAGTAACGTTTAAATGCACACAATC
AGTGGATCGACTAGCAGCTGTAATAGCACGAGCACCAGGGGCCGAGATCG
GAGGGGGGAGAGGTGGAGGAGGGAGAATTATAAGGAAGAAAACCCGGTAG
ACCTTGGTGTAATCACCAGGATACGGGCGCCTTAATAAAGAAGTAAAATA
AAAAGTGCTGCCCAAGGCTCACTGGAATGGGCCGGGCAAAGAACATGAAC
ATCGTCGGTCAGCGAGAAGAAGCAGAAGCAGAGAAGCAGGGTGAGGTGGT
CATAGTTCTTTTCTGCCGCTATCCTACAATCCTGAACTGGCTTTACGCCG
TCCTTTGTTTTCCGCCCCGTCCTTTTGACATTAGTCCTTTCTTTATTGCG
CAGAGCGGCGGCACAAAGACGACATTTTTGCTGTCATTGTGCTGGTAGAT
GGCCTGAATTCGAGCGTGCGTGGCCGTCGACGTAGTCGAAGCCCGGGCCG
ATCTATGTGCACGACGCACATACAGCAATGCACGCGTCGTTGTTCTGGAA
TGCACGACAAAATCTCACTAGCTCCCACCTCAAAAATATCCACATCTCTT
ATAGTAATTCTACCATGATCGCTACGCGTGCCTTGCTCTGCCTGGCCCTA
CCGGCCTTGGCCTCCGCCTTCGTTAGCCGTGCCCCCACTGCTGTGACCCG
CGCCTCTGCTCCTGTGAAGGGCCGCACAGTGGTAATGGAGTCCATCTCGG
ACTTCCTCAAGTTTGATGCGAAGCTCGGCGAGCTGGAAGTGACCAAGGCT
GGCGTGTAAGTAGACGTGGACAGGAGGGAGGGAGGAAAGTAACGGTGGAA
GGACGATGATGAGGAGCGGGCTGGCTTGGGTGGGTTTGCCTCTTTGTACA
TGCGGCCTTCGTGGATGATGCCCACGTTTTCAGTTTAATGGCCATCGTAT
TGTCCGTCCAGGTGTGGAGCATCAGCCACGCCATCGTCTTTCTTTTTCAC
CCCTTTACACTTTTTCTTATTCCGAACACCCACAGCTCCGCTCCCTTCGG
TTTCTTCGATCCCTTAAACTTTTACGGCGGCCAAAGCACCCGCACCAAGA
AGAAGTTCCGTGAGTCAGAGCTCAAGCACGGCCGCGTCGCTATGATGGCC
GTGGCTGGCATTTTTTTTCAAGAAATCTGGCACCCGTTGTTGGCGGGGGA
TGACTTCGAGACAGCGCTGGACCAATACTATGGAGTGACGGAGTTTATAC
CTGATTTTGGCCTGGGGGCGATGTTTGTGTTGTCGTTGTTCGAATTCAAG
AGCATTGCCAAGGGCTGGGACCCGATTGAAGAGACGCTTAAGAACCCAAG
TACGTGTCTTGTGTGTGGTTTCTGATGCTGCCTCTTTTTGTCAACTATCT
TGAGGCTGTCTCTGTGAGTCCAATTGTCCCTGTCGAACCCCCCGCTCGTT
TATACACTTCAGCAGAATCAGCCATTAACCTGCCTCTGACCCTCTCTGTT
ACCGCATCTACTTGCTGGTCGTAATGTATATCCTAACCAAAACCAACCAT
GTCCCCAACCTTCCTCTTCTCCCCCTCCACGACATAGAAATTGCTGGCAT
GCGCGACGACTACGTGGCAGGTGATTTACAGTACGATCCCCTTGGCTTCT
GCCCTGACGATGACGAGGACTTTATCACCATGCGCACGAAGGAGCTGAAT
AATGGCCGCATGGCGATGATTGCCGTCATTGGCATTATTGCCCAGGAGAT
TGTGACGGGCGTCCCTATTGTTAAGTCCATCTTTGGATAAATATCTGATG
ATGTGTGTGTGTGTGCGTGAGAAAGAGAAAGCAAGAAGGGACTCAAAAAA
AGAAAATAAAAGAGATATGGAGAAGCAGTGTATGTGTGTGTGTTCGTATG
TTTGTTTGAAAATATGCTGTGATAAAACTGGTTTGTGTGGGTCCGTGCGT
TGGCAGTGGCGTCATATGAACTTGTGTTGAGTGTGTTTTATCTTAACAAA
GAAGCAGACACAAGAGATTAAGAAGAGTAAATGAAATCAGGCCAAATGCT
AT
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Coding sequence (CDS) from alignment at chr7:859492..861643-

>NO07G03080.1 ID=NO07G03080.1|Name=NO07G03080.1|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr7:859492..861643- (Nannochloropsis oceanica)
ATGCACGCGTCGTTGTTCTGGAATGCACGACAAAATCTCACTAGCTCCCA
CCTCAAAAATATCCACATCTCTTATAGTAATTCTACCATGATCGCTACGC
GTGCCTTGCTCTGCCTGGCCCTACCGGCCTTGGCCTCCGCCTTCGTTAGC
CGTGCCCCCACTGCTGTGACCCGCGCCTCTGCTCCTGTGAAGGGCCGCAC
AGTGGTAATGGAGTCCATCTCGGACTTCCTCAAGTTTGATGCGAAGCTCG
GCGAGCTGGAAGTGACCAAGGCTGGCGTCTCCGCTCCCTTCGGTTTCTTC
GATCCCTTAAACTTTTACGGCGGCCAAAGCACCCGCACCAAGAAGAAGTT
CCGTGAGTCAGAGCTCAAGCACGGCCGCGTCGCTATGATGGCCGTGGCTG
GCATTTTTTTTCAAGAAATCTGGCACCCGTTGTTGGCGGGGGATGACTTC
GAGACAGCGCTGGACCAATACTATGGAGTGACGGAGTTTATACCTGATTT
TGGCCTGGGGGCGATGTTTGTGTTGTCGTTGTTCGAATTCAAGAGCATTG
CCAAGGGCTGGGACCCGATTGAAGAGACGCTTAAGAACCCAAAAATTGCT
GGCATGCGCGACGACTACGTGGCAGGTGATTTACAGTACGATCCCCTTGG
CTTCTGCCCTGACGATGACGAGGACTTTATCACCATGCGCACGAAGGAGC
TGAATAATGGCCGCATGGCGATGATTGCCGTCATTGGCATTATTGCCCAG
GAGATTGTGACGGGCGTCCCTATTGTTAAGTCCATCTTTGGATAA
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Synonyms
Publications