NO07G03050.1, NO07G03050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03050.1
Unique NameNO07G03050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length303
Alignment locationchr7:849094..849755 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:849094..849755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03050.1 vs.
Match: XP_009830968.1 (hypothetical protein H257_07215 [Aphanomyces astaci]; ETV80032.1 hypothetical protein H257_07215 [Aphanomyces astaci])

HSP 1 Score: 83.2 bits (204), Expect = 5.100e-13
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 0 
Query:    3 SDQLAGAFLLAVAVIVFVYYTLWVIVLPFIDPDVGLHAFFPPRFYAIAIPTVLLVVFVGLVTLFIGLTMLRA 75
            SDQ AGA LLAV+V+ +VYY LWVI+ PF+D D  + +FFP R+YAIAIP+VLLVVF+ + + FIGL M+R+
Sbjct:    5 SDQRAGAILLAVSVVSYVYYFLWVIISPFVDKDHIVQSFFPERYYAIAIPSVLLVVFLTVCSTFIGLVMIRS 76
The following BLAST results are available for this feature:
BLAST of NO07G03050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009830968.15.100e-1361.11hypothetical protein H257_07215 [Aphanomyces astac... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03050NO07G03050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03050.1NO07G03050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03050.1.cds1NO07G03050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03050.1.cds2NO07G03050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03050.1.cds3NO07G03050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03050.1 ID=NO07G03050.1|Name=NO07G03050.1|organism=Nannochloropsis oceanica|type=mRNA|length=303bp
ATGGGGTCGGACCAACTCGCGGGGGCCTTCTTGCTCGCCGTGGCCGTCAT
TGTCTTCGTCTACTACACGCTTTGGGTCATAGTATTGCCATTCATCGACC
CCGACGTAGGCCTTCACGCTTTCTTCCCTCCTCGATTTTACGCAATCGCT
ATTCCTACCGTCCTCCTCGTCGTTTTTGTCGGCCTTGTGACTCTGTTTAT
TGGCCTAACCATGCTCAGGGCTGCGTCGGCGGAGAAGCGGAAAAAGAAGC
AGCCACAAGCATCTACGGCGTCGGCGAAAAATAAAAGGAAGAAGGTTACG
TAA
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protein sequence of NO07G03050.1

>NO07G03050.1-protein ID=NO07G03050.1-protein|Name=NO07G03050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MGSDQLAGAFLLAVAVIVFVYYTLWVIVLPFIDPDVGLHAFFPPRFYAIA
IPTVLLVVFVGLVTLFIGLTMLRAASAEKRKKKQPQASTASAKNKRKKVT
*
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mRNA from alignment at chr7:849094..849755-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03050.1 ID=NO07G03050.1|Name=NO07G03050.1|organism=Nannochloropsis oceanica|type=mRNA|length=662bp|location=Sequence derived from alignment at chr7:849094..849755- (Nannochloropsis oceanica)
ATGGGGGTAAGTGACTAAACAAGATTTTTGAGTGTCTCTCCATCTGTGCT
TCCACTGCCTCCGTCCCTTACCCACTTACACTCACTTACGCAGTCGGACC
AACTCGCGGGGGCCTTCTTGCTCGCCGTGGCCGTCATTGTCTTCGTCTAC
TACACGCTTTGGGTCATAGTATTGGTAAGTAGCCATTCGTACGGTCATAT
AATCCGTCATGGGTATTCACCGCGGCTGTGTATGTTAAAAGTTGTGTGTG
TGCCTTGCGGCGGAGTAATAGCATGCGCTTATACCGAGTCTTGACCTCCC
CACCCTCTCGGCCCACCTGTGACCACGATCCCCTCTCACTTGCTTTCGTG
GATGTCGCATCAATGCTAATTCTGGGCTGGTGGACTCGCCAGCGTGTGTC
TTTGTACCTGTAGTGCTCATGTCCTCCTCCTGCCCCCCAAAACCAGCCAT
TCATCGACCCCGACGTAGGCCTTCACGCTTTCTTCCCTCCTCGATTTTAC
GCAATCGCTATTCCTACCGTCCTCCTCGTCGTTTTTGTCGGCCTTGTGAC
TCTGTTTATTGGCCTAACCATGCTCAGGGCTGCGTCGGCGGAGAAGCGGA
AAAAGAAGCAGCCACAAGCATCTACGGCGTCGGCGAAAAATAAAAGGAAG
AAGGTTACGTAA
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Coding sequence (CDS) from alignment at chr7:849094..849755-

>NO07G03050.1 ID=NO07G03050.1|Name=NO07G03050.1|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at chr7:849094..849755- (Nannochloropsis oceanica)
ATGGGGTCGGACCAACTCGCGGGGGCCTTCTTGCTCGCCGTGGCCGTCAT
TGTCTTCGTCTACTACACGCTTTGGGTCATAGTATTGCCATTCATCGACC
CCGACGTAGGCCTTCACGCTTTCTTCCCTCCTCGATTTTACGCAATCGCT
ATTCCTACCGTCCTCCTCGTCGTTTTTGTCGGCCTTGTGACTCTGTTTAT
TGGCCTAACCATGCTCAGGGCTGCGTCGGCGGAGAAGCGGAAAAAGAAGC
AGCCACAAGCATCTACGGCGTCGGCGAAAAATAAAAGGAAGAAGGTTACG
TAA
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Synonyms
Publications