NO07G03030.1, NO07G03030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03030.1
Unique NameNO07G03030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2164
Alignment locationchr7:846529..848918 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:846529..848918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03030.1 vs.
Match: EWM27077.1 (lactation elevated 1 [Nannochloropsis gaditana])

HSP 1 Score: 586.6 bits (1511), Expect = 8.900e-164
Identity = 357/604 (59.11%), Postives = 418/604 (69.21%), Query Frame = 0 
Query:   45 RPILRLL-RQRQGFPSV-----LSSFSQANALPFDLQSLVASAGAAKRPLMDVYEELVEQGALREDPEQRRVAKRLDKLSRLLQTYTPPVNLFAPSAAATAPSLSTSAVGEPSSSSSSSSSSSSSSSSSFSSSSSSSFSSSSSSSSSALSPSPPKLQRKVLRGFYLHGQVGTGKSLLMDLFFHHCPLPRKRRVHFHAFMLEVHARIHAWKQRALREEGRQRHVDLRPERNAIIQIAKEIGQEATVLCFDEFQVTDVADAIIMSSLFGELWTGSGVVVIATSNRAPSELYMDGLNRPYFLPFIDLLCRQCVVEDMDSERDHRQGFAKLKGRYFWP------GQVKDEEEEEE------KGVEDEED----VQVQETFKGRREAARALNKAYLKLTGGRRGRATRIPVMMGRTLHVPEASEDGKICRFTFEDLCATQVFAADYAAITERFQTVVLEGVPLMSAEKPNEARRFITLVDMLYERRMALFMSAEVPVMALF----RRTMGKGEEGLKEGRYSTCVNMGSLAGETRVIEGGREGGTGEEPPGEKGAFSEADPLLRQYVDAAQELIVPEGELASVKELAFAFKRAASRLVEMGSEEYLREG 623
            RP+L L  RQR+ F +      L+S   AN+L   LQ+ VASAG A RPL++VYE LV +GALR D +Q RVA+RLDKLSRLL TYTPP++     ++ T PS                             SSSSS   ++ SS++  SPS P  Q KVLRG YLHG+VGTGKSLLMDLFFHHCPL RKRRVHFH+FMLEVHARIHAWKQ AL+ EGRQRHVDLRPERNAI QIA++IGQEATVLCFDEFQVTDVADAIIMS LF ELW GSGVVV+ATSNR P +LY+ GLNRPYFLPFIDLL RQC VE M+SERDHR+GFA  +G+YF P       + K    E E      KG ++EE      +V+ETFKGRREAARAL+ A+L+L+GGRRG   ++PVMMGRTL VPEA   G ICRF+FE+LCAT VFAADY A++  F T+VLEGV  M A + NEARRFITLVD+LYE +  L MSAE P+  LF    R+  G    G   G     V  G+  G TR  EGGRE   G    G++GA        R++VDAAQEL+VPEGELASVKEL+FAF+RAASRL EM S+EY   G
Sbjct:    4 RPVLLLAARQRRPFLASTRALGLASTWHANSLRPGLQNEVASAGIANRPLIEVYEALVNEGALRRDAKQHRVARRLDKLSRLLATYTPPMSFKQMDSSLTLPS-----------------------------SSSSSEKKTTPSSTAVASPSSPTAQHKVLRGLYLHGEVGTGKSLLMDLFFHHCPLKRKRRVHFHSFMLEVHARIHAWKQEALQREGRQRHVDLRPERNAITQIARQIGQEATVLCFDEFQVTDVADAIIMSRLFAELWQGSGVVVVATSNRPPEDLYLGGLNRPYFLPFIDLLRRQCRVESMESERDHRRGFAWQQGKYFTPTVHEGVSEAKRRVGEGENAGAGSKGGKEEEKKGRMAEVKETFKGRREAARALDAAFLRLSGGRRGGPCQVPVMMGRTLRVPEAC--GGICRFSFEELCATDVFAADYQALSGYFHTLVLEGVACMGARRANEARRFITLVDVLYESKTRLLMSAERPIGNLFLGEERKEEGNTGSGGVVGGSGVQVGSGAGGGGTRDREGGRELEAG----GKEGAG-------REHVDAAQELMVPEGELASVKELSFAFRRAASRLREMASQEYWNAG 565
The following BLAST results are available for this feature:
BLAST of NO07G03030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27077.18.900e-16459.11lactation elevated 1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03030NO07G03030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03030.1NO07G03030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03030.1.cds1NO07G03030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03030.1.cds2NO07G03030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03030.1.cds3NO07G03030.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03030.1 ID=NO07G03030.1|Name=NO07G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2164bp
TATGTTTTGGTAATGGATTTGCGGAAGCGGACCCAGACAAGATAAATGAG
AGGCGCATTAGAGATAGATTGGAGACCAAGCCGTGGTTGCTAGTCCAGAA
TTGAGTGCTTACTATTGCAAAATGGGCGCGAGTAGTTACGCGGATCATAC
CTCCTGCCGTCAAAACCAACCTCCCCACCCCCCTGACTCACGCACGCAAA
TACCACCACAGCTTTCACTCATACAACCTACAGTGATGCTCTATTGTCAT
CGCCGCCCGATCCTTAGGCTACTGCGGCAGCGGCAGGGCTTCCCTTCTGT
CCTGTCCTCTTTCAGCCAAGCCAATGCCCTCCCCTTTGACCTCCAGAGTC
TGGTTGCGAGCGCCGGTGCCGCTAAGCGTCCCTTGATGGACGTGTATGAA
GAACTGGTCGAACAAGGGGCATTGCGCGAGGACCCCGAGCAACGACGGGT
TGCAAAACGCCTAGACAAACTTTCTCGCCTCCTCCAAACCTATACGCCTC
CTGTCAACCTGTTCGCACCATCTGCAGCAGCGACAGCGCCATCCTTGTCT
ACTTCAGCTGTTGGCGAGCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCTTCCTCCTCTTTCT
CCTCCTCCTCCTCCTCCTCCTCCTCCGCTCTTTCTCCTTCCCCTCCTAAG
TTGCAACGGAAAGTCCTCCGCGGGTTCTACCTCCACGGTCAAGTCGGCAC
AGGAAAGTCCTTGCTAATGGACCTCTTCTTCCACCACTGTCCATTACCAC
GCAAGCGTCGCGTACATTTTCATGCCTTTATGCTAGAGGTACACGCACGG
ATTCATGCGTGGAAGCAACGAGCATTAAGGGAGGAAGGGAGGCAGCGCCA
TGTTGATCTGAGGCCAGAACGGAATGCAATTATTCAGATTGCTAAGGAGA
TTGGGCAAGAAGCAACCGTTCTCTGTTTCGATGAATTTCAAGTGACTGAC
GTGGCTGACGCCATCATCATGAGCAGCCTGTTCGGAGAGCTCTGGACGGG
GTCAGGAGTTGTCGTCATCGCAACCAGCAATCGCGCTCCCTCGGAGTTGT
ACATGGATGGATTGAATAGACCCTATTTTTTGCCGTTTATTGATCTGTTG
TGTAGGCAGTGTGTAGTGGAGGACATGGACTCGGAGAGGGATCACAGGCA
GGGCTTTGCGAAATTGAAGGGAAGGTATTTTTGGCCAGGACAGGTGAAGG
ACGAGGAGGAGGAGGAGGAGAAAGGGGTGGAGGACGAGGAGGACGTGCAG
GTACAAGAGACGTTTAAGGGTCGGCGAGAGGCCGCCCGGGCGCTTAACAA
GGCCTACCTGAAGCTTACCGGAGGGAGGAGGGGGAGGGCAACGCGGATTC
CCGTGATGATGGGGAGGACCTTGCATGTACCTGAAGCAAGCGAGGATGGG
AAGATATGTCGGTTCACATTTGAAGACTTGTGTGCGACTCAGGTGTTTGC
CGCTGACTACGCGGCTATCACCGAGAGGTTCCAAACGGTGGTGTTGGAGG
GGGTGCCGTTGATGAGTGCGGAGAAGCCCAACGAGGCCAGGCGGTTCATC
ACCTTGGTGGACATGTTGTACGAGAGGAGGATGGCGCTGTTTATGTCGGC
CGAGGTGCCGGTGATGGCTTTGTTTCGACGGACGATGGGCAAGGGAGAGG
AAGGATTGAAGGAAGGGAGGTATTCAACGTGTGTGAATATGGGATCACTT
GCGGGGGAGACAAGGGTGATAGAAGGAGGGAGGGAGGGAGGGACTGGTGA
GGAGCCGCCGGGAGAAAAAGGTGCTTTCTCCGAGGCAGATCCATTGTTGC
GGCAGTACGTTGATGCAGCACAGGAGTTGATAGTGCCAGAGGGAGAGCTG
GCGTCGGTAAAGGAATTGGCGTTTGCTTTCAAGAGAGCGGCTTCGCGGTT
GGTGGAGATGGGCAGTGAGGAGTACTTGAGAGAGGGGGTAGGGAGGGGGA
GTGGGCAGTGAGCGAATAAGGGGGGGGGGTCGAGGAGAGGAGGGAGCGCA
CACTGTAAAGAAGAGAACGGCACTTAGTTTTGTTCCAGCATATATAGAGA
CAAATGTAGAAATAGGAAGAAGAGCGGGCAGCTGAGAGGCGGTTGGACGA
GGAAGAAGTTCTCG
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protein sequence of NO07G03030.1

>NO07G03030.1-protein ID=NO07G03030.1-protein|Name=NO07G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=630bp
MGASSYADHTSCRQNQPPHPPDSRTQIPPQLSLIQPTVMLYCHRRPILRL
LRQRQGFPSVLSSFSQANALPFDLQSLVASAGAAKRPLMDVYEELVEQGA
LREDPEQRRVAKRLDKLSRLLQTYTPPVNLFAPSAAATAPSLSTSAVGEP
SSSSSSSSSSSSSSSSSFSSSSSSSFSSSSSSSSSALSPSPPKLQRKVLR
GFYLHGQVGTGKSLLMDLFFHHCPLPRKRRVHFHAFMLEVHARIHAWKQR
ALREEGRQRHVDLRPERNAIIQIAKEIGQEATVLCFDEFQVTDVADAIIM
SSLFGELWTGSGVVVIATSNRAPSELYMDGLNRPYFLPFIDLLCRQCVVE
DMDSERDHRQGFAKLKGRYFWPGQVKDEEEEEEKGVEDEEDVQVQETFKG
RREAARALNKAYLKLTGGRRGRATRIPVMMGRTLHVPEASEDGKICRFTF
EDLCATQVFAADYAAITERFQTVVLEGVPLMSAEKPNEARRFITLVDMLY
ERRMALFMSAEVPVMALFRRTMGKGEEGLKEGRYSTCVNMGSLAGETRVI
EGGREGGTGEEPPGEKGAFSEADPLLRQYVDAAQELIVPEGELASVKELA
FAFKRAASRLVEMGSEEYLREGVGRGSGQ*
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mRNA from alignment at chr7:846529..848918+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03030.1 ID=NO07G03030.1|Name=NO07G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2390bp|location=Sequence derived from alignment at chr7:846529..848918+ (Nannochloropsis oceanica)
TATGTTTTGGTAATGGATTTGCGGAAGCGGACCCAGACAAGATAAATGAG
AGGCGCATTAGAGATAGATTGGAGACCAAGCCGTGGTTGCTAGTCCAGAA
TTGAGTGCTTACTATTGCAAAATGGGCGCGAGTAGTTACGCGGATCATAC
CTCCTGCCGTCAAAACCAACCTCCCCACCCCCCTGACTCACGCACGCAAA
TACCACCACAGCTTTCACTCATACAACCTACAGTGATGCTCTATTGTCAT
CGCCGCCCGATCCTTAGGCTACTGCGGCAGCGGCAGGGCTTCCCTTCTGT
CCTGTCCTCTTTCAGCCAAGCCAATGCCCTCCCCTTTGACCTCCAGGTAA
AGGATGCCTGCATGGCCGGCTTGCTCCTTTTGTTATATTGCCTTGTGCCC
CTTTTTGTCGCCATCTCCCCCACTTACTTCAAAAATACAATATAAGTAGA
GTCTGGTTGCGAGCGCCGGTGCCGCTAAGCGTCCCTTGATGGACGTGTAT
GAAGAACTGGTCGAACAAGGGGCATTGCGCGAGGACCCCGAGCAACGACG
GGTTGCAAAACGCCTAGACAAACTTTCTCGCCTCCTCCAAACCTATACGC
CTCCTGTCAACCTGTTCGCACCATCTGCAGCAGCGACAGCGCCATCCTTG
TCTACTTCAGCTGTTGGCGAGCCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCTTCCTCCTCTT
TCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCTCTTTCTCCTTCCCCTCCT
AAGTTGCAACGGAAAGTCCTCCGCGGGTTCTACCTCCACGGTCAAGTCGG
CACAGGAAAGTCCTTGCTAATGGACCTCTTCTTCCACCACTGTCCATTAC
CACGCAAGCGTCGCGTACATTTTCATGCCTTTATGCTAGAGGTACACGCA
CGGATTCATGCGTGGAAGCAACGAGCATTAAGGGAGGAAGGGAGGCAGCG
CCATGTTGATCTGAGGCCAGAACGGAATGCAATTATTCAGATTGCTAAGG
AGATTGGGTAAGGGAAAACGGGAGAAGGGGAGGGAAGAAAGGGGGGGAGA
GAGTGACAAGATAGCGAGAAGGCAAGCAAGAGACTCACACTAACCCACGC
CCAAATCTTCATTCTTCCACTCGTTTTCAGGCAAGAAGCAACCGTTCTCT
GTTTCGATGAATTTCAAGTGACTGACGTGGCTGACGCCATCATCATGAGC
AGCCTGTTCGGAGAGCTCTGGACGGGGTCAGGAGTTGTCGTCATCGCAAC
CAGCAATCGCGCTCCCTCGGAGTTGTACATGGATGGATTGAATAGACCCT
ATTTTTTGCCGTTTATTGATCTGTTGTGTAGGCAGTGTGTAGTGGAGGAC
ATGGACTCGGAGAGGGATCACAGGCAGGGCTTTGCGAAATTGAAGGGAAG
GTATTTTTGGCCAGGACAGGTGAAGGACGAGGAGGAGGAGGAGGAGAAAG
GGGTGGAGGACGAGGAGGACGTGCAGGTACAAGAGACGTTTAAGGGTCGG
CGAGAGGCCGCCCGGGCGCTTAACAAGGCCTACCTGAAGCTTACCGGAGG
GAGGAGGGGGAGGGCAACGCGGATTCCCGTGATGATGGGGAGGACCTTGC
ATGTACCTGAAGCAAGCGAGGATGGGAAGATATGTCGGTTCACATTTGAA
GACTTGTGTGCGACTCAGGTGTTTGCCGCTGACTACGCGGCTATCACCGA
GAGGTTCCAAACGGTGGTGTTGGAGGGGGTGCCGTTGATGAGTGCGGAGA
AGCCCAACGAGGCCAGGCGGTTCATCACCTTGGTGGACATGTTGTACGAG
AGGAGGATGGCGCTGTTTATGTCGGCCGAGGTGCCGGTGATGGCTTTGTT
TCGACGGACGATGGGCAAGGGAGAGGAAGGATTGAAGGAAGGGAGGTATT
CAACGTGTGTGAATATGGGATCACTTGCGGGGGAGACAAGGGTGATAGAA
GGAGGGAGGGAGGGAGGGACTGGTGAGGAGCCGCCGGGAGAAAAAGGTGC
TTTCTCCGAGGCAGATCCATTGTTGCGGCAGTACGTTGATGCAGCACAGG
AGTTGATAGTGCCAGAGGGAGAGCTGGCGTCGGTAAAGGAATTGGCGTTT
GCTTTCAAGAGAGCGGCTTCGCGGTTGGTGGAGATGGGCAGTGAGGAGTA
CTTGAGAGAGGGGGTAGGGAGGGGGAGTGGGCAGTGAGCGAATAAGGGGG
GGGGGTCGAGGAGAGGAGGGAGCGCACACTGTAAAGAAGAGAACGGCACT
TAGTTTTGTTCCAGCATATATAGAGACAAATGTAGAAATAGGAAGAAGAG
CGGGCAGCTGAGAGGCGGTTGGACGAGGAAGAAGTTCTCG
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Coding sequence (CDS) from alignment at chr7:846529..848918+

>NO07G03030.1 ID=NO07G03030.1|Name=NO07G03030.1|organism=Nannochloropsis oceanica|type=CDS|length=1890bp|location=Sequence derived from alignment at chr7:846529..848918+ (Nannochloropsis oceanica)
ATGGGCGCGAGTAGTTACGCGGATCATACCTCCTGCCGTCAAAACCAACC
TCCCCACCCCCCTGACTCACGCACGCAAATACCACCACAGCTTTCACTCA
TACAACCTACAGTGATGCTCTATTGTCATCGCCGCCCGATCCTTAGGCTA
CTGCGGCAGCGGCAGGGCTTCCCTTCTGTCCTGTCCTCTTTCAGCCAAGC
CAATGCCCTCCCCTTTGACCTCCAGAGTCTGGTTGCGAGCGCCGGTGCCG
CTAAGCGTCCCTTGATGGACGTGTATGAAGAACTGGTCGAACAAGGGGCA
TTGCGCGAGGACCCCGAGCAACGACGGGTTGCAAAACGCCTAGACAAACT
TTCTCGCCTCCTCCAAACCTATACGCCTCCTGTCAACCTGTTCGCACCAT
CTGCAGCAGCGACAGCGCCATCCTTGTCTACTTCAGCTGTTGGCGAGCCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTTCTCCTCCTCCTCTTCCTCCTCTTTCTCCTCCTCCTCCTCCTCCTCCT
CCTCCGCTCTTTCTCCTTCCCCTCCTAAGTTGCAACGGAAAGTCCTCCGC
GGGTTCTACCTCCACGGTCAAGTCGGCACAGGAAAGTCCTTGCTAATGGA
CCTCTTCTTCCACCACTGTCCATTACCACGCAAGCGTCGCGTACATTTTC
ATGCCTTTATGCTAGAGGTACACGCACGGATTCATGCGTGGAAGCAACGA
GCATTAAGGGAGGAAGGGAGGCAGCGCCATGTTGATCTGAGGCCAGAACG
GAATGCAATTATTCAGATTGCTAAGGAGATTGGGCAAGAAGCAACCGTTC
TCTGTTTCGATGAATTTCAAGTGACTGACGTGGCTGACGCCATCATCATG
AGCAGCCTGTTCGGAGAGCTCTGGACGGGGTCAGGAGTTGTCGTCATCGC
AACCAGCAATCGCGCTCCCTCGGAGTTGTACATGGATGGATTGAATAGAC
CCTATTTTTTGCCGTTTATTGATCTGTTGTGTAGGCAGTGTGTAGTGGAG
GACATGGACTCGGAGAGGGATCACAGGCAGGGCTTTGCGAAATTGAAGGG
AAGGTATTTTTGGCCAGGACAGGTGAAGGACGAGGAGGAGGAGGAGGAGA
AAGGGGTGGAGGACGAGGAGGACGTGCAGGTACAAGAGACGTTTAAGGGT
CGGCGAGAGGCCGCCCGGGCGCTTAACAAGGCCTACCTGAAGCTTACCGG
AGGGAGGAGGGGGAGGGCAACGCGGATTCCCGTGATGATGGGGAGGACCT
TGCATGTACCTGAAGCAAGCGAGGATGGGAAGATATGTCGGTTCACATTT
GAAGACTTGTGTGCGACTCAGGTGTTTGCCGCTGACTACGCGGCTATCAC
CGAGAGGTTCCAAACGGTGGTGTTGGAGGGGGTGCCGTTGATGAGTGCGG
AGAAGCCCAACGAGGCCAGGCGGTTCATCACCTTGGTGGACATGTTGTAC
GAGAGGAGGATGGCGCTGTTTATGTCGGCCGAGGTGCCGGTGATGGCTTT
GTTTCGACGGACGATGGGCAAGGGAGAGGAAGGATTGAAGGAAGGGAGGT
ATTCAACGTGTGTGAATATGGGATCACTTGCGGGGGAGACAAGGGTGATA
GAAGGAGGGAGGGAGGGAGGGACTGGTGAGGAGCCGCCGGGAGAAAAAGG
TGCTTTCTCCGAGGCAGATCCATTGTTGCGGCAGTACGTTGATGCAGCAC
AGGAGTTGATAGTGCCAGAGGGAGAGCTGGCGTCGGTAAAGGAATTGGCG
TTTGCTTTCAAGAGAGCGGCTTCGCGGTTGGTGGAGATGGGCAGTGAGGA
GTACTTGAGAGAGGGGGTAGGGAGGGGGAGTGGGCAGTGA
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Synonyms
Publications