NO07G02960.1, NO07G02960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02960.1
Unique NameNO07G02960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1170
Alignment locationchr7:832872..834041 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:832872..834041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02960.1 vs.
Match: EWM27080.1 (tetrapyrrole methylase family protein [Nannochloropsis gaditana])

HSP 1 Score: 463.4 bits (1191), Expect = 7.000e-127
Identity = 254/409 (62.10%), Postives = 313/409 (76.53%), Query Frame = 0 
Query:    1 MRIRPTVHFVPILLHLACFSTTAHRQ---LVHTGVGSAASARGLGCFLAPR--LLQCLPLLS-------------SNSRICHSSTRSGAGNSISPSDEGIPGRVPNKIIPGTIYFVATPVGNLGDITLRALDVLRGVDVIASEDTRTTGLLLKALGLTKKPQMSHHQHNVQSRVPELVRKAQVENLSIAVVSDAGTPGISDPGNELAAACWAAGVPVVPVPGACAAVAAVSVSGFASTEFVFIGFLPAKSGKSRKAKVAEVATQDRPCVLYESPNRVLRTLMEIREADETGGERMVMCARELTKLHEELFRGTLSEAVLHFGGQE----GSDSPSTASPRGEFTLVLGPLPRMARGKEEMGALVREMLQVCLDEEELSASEAAKKVSKCLGKEAGLARSDVYKIALEIK 388
            MR +P++ F+ ILL LA   TT       +    + S      L  F++PR  L     +LS             S SR C SST          ++E +P RVPNKI+PGTIYFV+TP+GNLGDITLRALDVLRGVD+IASEDTRTTGLLLKALGL KKPQ+SHHQHN+QSRVP+L+R+AQ E LSIAVVSDAGTPG+SDPG+ELAAACW AGVP+VPVPGACAAVAA+SV+GF STEF FIGFLP++SGK R+A+VA+ A ++RPC+LYESPNR+LRTL E+READETGG R+V+ ARELTKLHE+L+RGTL+EA+ HFGG+E      ++ + A  RGEFTLVLGP PR+AR +EE+   V+ ML+ CL+E+ +SASEAAK  SK LGKEAGLA+SD+YK+A+E+K
Sbjct:   33 MRKKPSLPFLSILLLLAAHCTTTDHVEGCIKVANIASTVRNHRLRAFVSPRRVLPHVRAVLSRKSYGVGAGAPCTSTSRYCTSST--------DHTEEDMPRRVPNKIMPGTIYFVSTPLGNLGDITLRALDVLRGVDLIASEDTRTTGLLLKALGLGKKPQVSHHQHNIQSRVPDLIRRAQEERLSIAVVSDAGTPGVSDPGSELAAACWTAGVPLVPVPGACAAVAAISVAGFPSTEFTFIGFLPSRSGKVRQAEVAKAAREERPCILYESPNRILRTLTELREADETGGGRLVLVARELTKLHEDLYRGTLTEALAHFGGKEEQGVSVEAGAFAPLRGEFTLVLGPRPRVARSQEEVSIAVQAMLRACLEEDGMSASEAAKAASKTLGKEAGLAKSDMYKLAVEMK 433
The following BLAST results are available for this feature:
BLAST of NO07G02960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27080.17.000e-12762.10tetrapyrrole methylase family protein [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02960NO07G02960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02960.1NO07G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02960.1.cds1NO07G02960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02960.1 ID=NO07G02960.1|Name=NO07G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp
ATGAGAATACGACCGACCGTCCACTTCGTGCCCATCCTCCTTCACCTTGC
CTGCTTTAGCACGACGGCGCACCGCCAGCTTGTTCATACTGGTGTGGGCT
CTGCCGCCTCCGCCCGCGGTCTGGGCTGCTTCCTTGCACCTCGCCTTCTG
CAATGTTTGCCACTGCTTTCCTCTAACTCGAGAATATGCCACAGCAGTAC
CCGCAGTGGCGCGGGCAACAGCATCAGCCCTAGCGATGAAGGGATACCCG
GGCGAGTTCCCAACAAAATAATTCCCGGTACTATCTACTTTGTCGCCACT
CCTGTGGGCAATCTTGGCGACATCACCCTCCGGGCCCTCGACGTGCTGCG
CGGCGTCGATGTGATCGCCTCAGAAGACACGCGAACAACGGGCTTGCTTC
TCAAGGCTCTTGGATTGACCAAAAAGCCACAAATGAGCCATCATCAACAC
AACGTGCAAAGTCGAGTGCCCGAACTGGTGCGGAAGGCCCAAGTCGAAAA
CCTATCCATTGCCGTGGTCTCAGACGCAGGCACACCTGGTATCTCCGACC
CTGGCAACGAGCTTGCCGCTGCATGTTGGGCCGCAGGGGTCCCTGTCGTG
CCTGTTCCAGGCGCATGCGCGGCAGTTGCCGCTGTGAGCGTCTCTGGATT
TGCATCGACGGAGTTCGTGTTTATTGGCTTCCTCCCTGCGAAGAGTGGAA
AGTCCCGCAAGGCCAAAGTAGCCGAGGTGGCGACCCAAGACCGACCGTGT
GTGCTGTATGAGTCGCCTAACCGCGTGTTGCGCACGTTGATGGAAATTCG
GGAGGCGGATGAGACGGGCGGCGAACGGATGGTGATGTGTGCGCGGGAGC
TGACAAAGTTGCACGAAGAATTGTTTCGAGGTACCTTGAGTGAGGCTGTG
CTTCACTTTGGCGGTCAAGAGGGCAGCGATTCACCCTCAACAGCATCACC
GAGAGGAGAATTTACGTTGGTCTTGGGGCCATTGCCTCGGATGGCGCGGG
GGAAGGAGGAAATGGGTGCCTTGGTGCGAGAAATGCTGCAGGTGTGTCTG
GACGAGGAAGAATTGTCTGCTTCCGAGGCGGCCAAAAAGGTCAGTAAGTG
TCTTGGAAAAGAGGCAGGGCTTGCCAGGTCGGATGTGTACAAAATAGCTC
TTGAAATAAAAGGTAAATAA
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protein sequence of NO07G02960.1

>NO07G02960.1-protein ID=NO07G02960.1-protein|Name=NO07G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MRIRPTVHFVPILLHLACFSTTAHRQLVHTGVGSAASARGLGCFLAPRLL
QCLPLLSSNSRICHSSTRSGAGNSISPSDEGIPGRVPNKIIPGTIYFVAT
PVGNLGDITLRALDVLRGVDVIASEDTRTTGLLLKALGLTKKPQMSHHQH
NVQSRVPELVRKAQVENLSIAVVSDAGTPGISDPGNELAAACWAAGVPVV
PVPGACAAVAAVSVSGFASTEFVFIGFLPAKSGKSRKAKVAEVATQDRPC
VLYESPNRVLRTLMEIREADETGGERMVMCARELTKLHEELFRGTLSEAV
LHFGGQEGSDSPSTASPRGEFTLVLGPLPRMARGKEEMGALVREMLQVCL
DEEELSASEAAKKVSKCLGKEAGLARSDVYKIALEIKGK*
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mRNA from alignment at chr7:832872..834041-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02960.1 ID=NO07G02960.1|Name=NO07G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp|location=Sequence derived from alignment at chr7:832872..834041- (Nannochloropsis oceanica)
ATGAGAATACGACCGACCGTCCACTTCGTGCCCATCCTCCTTCACCTTGC
CTGCTTTAGCACGACGGCGCACCGCCAGCTTGTTCATACTGGTGTGGGCT
CTGCCGCCTCCGCCCGCGGTCTGGGCTGCTTCCTTGCACCTCGCCTTCTG
CAATGTTTGCCACTGCTTTCCTCTAACTCGAGAATATGCCACAGCAGTAC
CCGCAGTGGCGCGGGCAACAGCATCAGCCCTAGCGATGAAGGGATACCCG
GGCGAGTTCCCAACAAAATAATTCCCGGTACTATCTACTTTGTCGCCACT
CCTGTGGGCAATCTTGGCGACATCACCCTCCGGGCCCTCGACGTGCTGCG
CGGCGTCGATGTGATCGCCTCAGAAGACACGCGAACAACGGGCTTGCTTC
TCAAGGCTCTTGGATTGACCAAAAAGCCACAAATGAGCCATCATCAACAC
AACGTGCAAAGTCGAGTGCCCGAACTGGTGCGGAAGGCCCAAGTCGAAAA
CCTATCCATTGCCGTGGTCTCAGACGCAGGCACACCTGGTATCTCCGACC
CTGGCAACGAGCTTGCCGCTGCATGTTGGGCCGCAGGGGTCCCTGTCGTG
CCTGTTCCAGGCGCATGCGCGGCAGTTGCCGCTGTGAGCGTCTCTGGATT
TGCATCGACGGAGTTCGTGTTTATTGGCTTCCTCCCTGCGAAGAGTGGAA
AGTCCCGCAAGGCCAAAGTAGCCGAGGTGGCGACCCAAGACCGACCGTGT
GTGCTGTATGAGTCGCCTAACCGCGTGTTGCGCACGTTGATGGAAATTCG
GGAGGCGGATGAGACGGGCGGCGAACGGATGGTGATGTGTGCGCGGGAGC
TGACAAAGTTGCACGAAGAATTGTTTCGAGGTACCTTGAGTGAGGCTGTG
CTTCACTTTGGCGGTCAAGAGGGCAGCGATTCACCCTCAACAGCATCACC
GAGAGGAGAATTTACGTTGGTCTTGGGGCCATTGCCTCGGATGGCGCGGG
GGAAGGAGGAAATGGGTGCCTTGGTGCGAGAAATGCTGCAGGTGTGTCTG
GACGAGGAAGAATTGTCTGCTTCCGAGGCGGCCAAAAAGGTCAGTAAGTG
TCTTGGAAAAGAGGCAGGGCTTGCCAGGTCGGATGTGTACAAAATAGCTC
TTGAAATAAAAGGTAAATAA
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Coding sequence (CDS) from alignment at chr7:832872..834041-

>NO07G02960.1 ID=NO07G02960.1|Name=NO07G02960.1|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at chr7:832872..834041- (Nannochloropsis oceanica)
ATGAGAATACGACCGACCGTCCACTTCGTGCCCATCCTCCTTCACCTTGC
CTGCTTTAGCACGACGGCGCACCGCCAGCTTGTTCATACTGGTGTGGGCT
CTGCCGCCTCCGCCCGCGGTCTGGGCTGCTTCCTTGCACCTCGCCTTCTG
CAATGTTTGCCACTGCTTTCCTCTAACTCGAGAATATGCCACAGCAGTAC
CCGCAGTGGCGCGGGCAACAGCATCAGCCCTAGCGATGAAGGGATACCCG
GGCGAGTTCCCAACAAAATAATTCCCGGTACTATCTACTTTGTCGCCACT
CCTGTGGGCAATCTTGGCGACATCACCCTCCGGGCCCTCGACGTGCTGCG
CGGCGTCGATGTGATCGCCTCAGAAGACACGCGAACAACGGGCTTGCTTC
TCAAGGCTCTTGGATTGACCAAAAAGCCACAAATGAGCCATCATCAACAC
AACGTGCAAAGTCGAGTGCCCGAACTGGTGCGGAAGGCCCAAGTCGAAAA
CCTATCCATTGCCGTGGTCTCAGACGCAGGCACACCTGGTATCTCCGACC
CTGGCAACGAGCTTGCCGCTGCATGTTGGGCCGCAGGGGTCCCTGTCGTG
CCTGTTCCAGGCGCATGCGCGGCAGTTGCCGCTGTGAGCGTCTCTGGATT
TGCATCGACGGAGTTCGTGTTTATTGGCTTCCTCCCTGCGAAGAGTGGAA
AGTCCCGCAAGGCCAAAGTAGCCGAGGTGGCGACCCAAGACCGACCGTGT
GTGCTGTATGAGTCGCCTAACCGCGTGTTGCGCACGTTGATGGAAATTCG
GGAGGCGGATGAGACGGGCGGCGAACGGATGGTGATGTGTGCGCGGGAGC
TGACAAAGTTGCACGAAGAATTGTTTCGAGGTACCTTGAGTGAGGCTGTG
CTTCACTTTGGCGGTCAAGAGGGCAGCGATTCACCCTCAACAGCATCACC
GAGAGGAGAATTTACGTTGGTCTTGGGGCCATTGCCTCGGATGGCGCGGG
GGAAGGAGGAAATGGGTGCCTTGGTGCGAGAAATGCTGCAGGTGTGTCTG
GACGAGGAAGAATTGTCTGCTTCCGAGGCGGCCAAAAAGGTCAGTAAGTG
TCTTGGAAAAGAGGCAGGGCTTGCCAGGTCGGATGTGTACAAAATAGCTC
TTGAAATAAAAGGTAAATAA
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Synonyms
Publications