NO07G02950.1, NO07G02950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02950.1
Unique NameNO07G02950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1563
Alignment locationchr7:829872..832003 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:829872..832003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02950.1 vs.
Match: EWM27087.1 (alkylated dna repair protein [Nannochloropsis gaditana])

HSP 1 Score: 487.6 bits (1254), Expect = 4.600e-134
Identity = 252/419 (60.14%), Postives = 313/419 (74.70%), Query Frame = 0 
Query:  100 QTPAQRVQHALMPEDILSSAIAGLPDLKAAHLSTAVLRLGKGLLQPKEATRRRQLTQDNKAFYTLLDKTLTLVSIPTANLGHIQDFLLGLALLEHPIYDDPTLQARIEMDLYRNLLARRVDELSPGDITGLAWCWEKLGFEPRRLPSALAEVTSTLPFRILIGALKTTTGEEDENKDKEEASLLDLEELRAEVNLKRDTIQLSPDKTIEESRLTAWQGTQPFNYSGKQMPARPMTPRISRIRDRLEILTGVRYDCVLINMYETGKTGMRYHVDPDQGVYWSTNTVVVSIGDTREFCLREIEEKAEEATFSKR-RGGSSMSNTSNSFSTSDGDGKSETINVTKKKKGKQNSHHRFFVAQNDVTEMTGECQWRYQHAVRVCDNADDAGPRMSLVYKQSLGQATEEERKWVASYLRQKGGGK 518
            +TPAQRVQHAL PEDILS+A+  +  LKA HL+TAVLR+GKGLLQPKEATRR+ L ++++ F TLL +TL L+S  +A+  HI DFLLGLALL++P+  +   + R+E  LY+++LA R +ELSPGDI+ L WCW K   +  RLP    EVTS LPFR+LIGAL    G        E A LLDL  LRAE++L+RDTIQLSP KT++ESRLTAWQGTQPF YSGK+MPAR MT R++RIRDRL ++TGV YDCVLIN+YETGK GMRYHVDPDQG+Y+STNTVVVS+GDTREFCLR I E+ EE    K  RG     +     S      +S +    + +KGK+ +HHRFFVAQ+D  EMT ECQWRYQHAV+VC++A+DAG RMSLV+KQ+L  AT++ER W+A+YL  K  GK
Sbjct:   63 ETPAQRVQHALAPEDILSNAVMNMKYLKAGHLATAVLRIGKGLLQPKEATRRKDL-RESQGFQTLLPQTLDLISTTSASTVHILDFLLGLALLDYPLCSEFPTRHRVEQ-LYQSILAARANELSPGDISSLVWCWRKFHLDVERLPPHFIEVTSALPFRVLIGALSGGDGAS------ESAELLDLAALRAEIDLQRDTIQLSPHKTVDESRLTAWQGTQPFFYSGKEMPAREMTARVARIRDRLAVVTGVYYDCVLINLYETGKVGMRYHVDPDQGIYFSTNTVVVSVGDTREFCLRSIAEEVEEEVGPKGIRGEGEKGSAGADKSHRKSQDRSASAKTVEGRKGKRATHHRFFVAQSDAVEMTRECQWRYQHAVKVCEHAEDAGARMSLVFKQTLDGATQDERYWIATYLSMKDEGK 473
The following BLAST results are available for this feature:
BLAST of NO07G02950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27087.14.600e-13460.14alkylated dna repair protein [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02950NO07G02950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02950.1NO07G02950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02950.1.cds1NO07G02950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02950.1.cds2NO07G02950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02950.1.cds3NO07G02950.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02950.1 ID=NO07G02950.1|Name=NO07G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp
ATGTGCCTAATAAAGTCGGAAATTCGGAAGGGTGCATTCAAAAGAATCAA
GACAAGACAAGTGGCAGGGCGGTGTAACTCGGCCCCGGGCCCCGGGCCCC
TGGCGGGGCTTCGAACTTCGAAGTTGGACTTGTCGGCGACAGGCAGTCCA
GTAATCGGGACTACTGGTTGGGCAAATGACGCATATCAGATGTATGGGAC
TAGTAATCACACATGCAACAACTTTCAAGCACAGGATTCATCCCGATGCT
GTCCTTGTCGGAGCCAAGAAGCCGCTCCTAGCAGTACGCAACAGCAGCAA
ACCCCAGCCCAACGCGTTCAGCATGCCCTTATGCCTGAGGATATTCTATC
AAGCGCTATCGCAGGACTCCCTGATCTCAAAGCTGCGCATTTATCAACTG
CAGTGCTCCGTCTAGGCAAGGGACTATTGCAACCCAAGGAAGCTACCCGC
CGCCGACAGTTGACACAGGATAACAAAGCCTTCTACACTCTCCTTGACAA
AACACTCACGCTCGTAAGCATTCCCACCGCGAATCTCGGTCATATCCAGG
ACTTTTTACTTGGGCTGGCCTTGCTAGAGCACCCCATATATGACGACCCC
ACTCTCCAAGCACGCATCGAAATGGACCTCTACCGTAATCTTTTGGCTCG
ACGAGTCGACGAACTCTCACCCGGTGACATTACCGGGCTCGCCTGGTGCT
GGGAGAAGCTCGGTTTTGAACCCAGACGCCTTCCTTCTGCCTTGGCAGAG
GTGACGTCCACCTTGCCATTTCGTATTCTGATAGGTGCGTTAAAGACAAC
AACTGGAGAGGAGGACGAAAACAAGGACAAGGAGGAAGCGTCCCTCTTAG
ATCTAGAGGAGTTGCGTGCCGAGGTGAATCTGAAGCGGGACACAATCCAG
TTGTCTCCTGATAAAACAATTGAAGAATCTCGTTTGACGGCATGGCAAGG
CACGCAGCCATTTAATTACAGTGGGAAGCAAATGCCTGCGCGACCGATGA
CCCCGAGAATTTCTCGGATACGGGATAGGCTGGAGATTTTGACGGGGGTG
CGGTATGACTGTGTATTGATAAATATGTACGAAACGGGCAAGACGGGCAT
GAGGTATCATGTAGATCCGGATCAAGGTGTCTATTGGTCGACCAATACGG
TGGTAGTAAGCATTGGCGACACCAGGGAATTCTGCCTTCGAGAGATCGAG
GAGAAGGCGGAGGAAGCCACCTTCAGCAAACGCCGGGGCGGAAGCAGCAT
GAGCAACACGAGCAATAGTTTCAGTACCAGCGATGGTGACGGTAAAAGCG
AGACAATAAATGTAACAAAAAAGAAGAAGGGAAAACAAAACTCACACCAC
CGATTTTTCGTCGCACAGAACGACGTCACTGAAATGACGGGGGAGTGTCA
ATGGCGGTACCAGCACGCCGTGAGAGTGTGCGATAATGCTGATGACGCTG
GCCCTAGAATGAGCCTTGTATATAAACAGAGCTTGGGACAGGCGACGGAG
GAGGAACGAAAGTGGGTCGCTTCCTATTTGCGACAAAAGGGTGGAGGGAA
GAGCGGTGGCTGA
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protein sequence of NO07G02950.1

>NO07G02950.1-protein ID=NO07G02950.1-protein|Name=NO07G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MCLIKSEIRKGAFKRIKTRQVAGRCNSAPGPGPLAGLRTSKLDLSATGSP
VIGTTGWANDAYQMYGTSNHTCNNFQAQDSSRCCPCRSQEAAPSSTQQQQ
TPAQRVQHALMPEDILSSAIAGLPDLKAAHLSTAVLRLGKGLLQPKEATR
RRQLTQDNKAFYTLLDKTLTLVSIPTANLGHIQDFLLGLALLEHPIYDDP
TLQARIEMDLYRNLLARRVDELSPGDITGLAWCWEKLGFEPRRLPSALAE
VTSTLPFRILIGALKTTTGEEDENKDKEEASLLDLEELRAEVNLKRDTIQ
LSPDKTIEESRLTAWQGTQPFNYSGKQMPARPMTPRISRIRDRLEILTGV
RYDCVLINMYETGKTGMRYHVDPDQGVYWSTNTVVVSIGDTREFCLREIE
EKAEEATFSKRRGGSSMSNTSNSFSTSDGDGKSETINVTKKKKGKQNSHH
RFFVAQNDVTEMTGECQWRYQHAVRVCDNADDAGPRMSLVYKQSLGQATE
EERKWVASYLRQKGGGKSGG*
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mRNA from alignment at chr7:829872..832003-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02950.1 ID=NO07G02950.1|Name=NO07G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2132bp|location=Sequence derived from alignment at chr7:829872..832003- (Nannochloropsis oceanica)
ATGTGCCTAATAAAGTCGGAAATTCGGAAGGGTGCATTCAAAAGAATCAA
GACAAGACAAGTGGCAGGGCGGTGTAACTCGGCCCCGGGCCCCGGGCCCC
TGGCGGGGCTTCGAACTTCGAAGTTGGACTTGTCGGCGACAGGCAGTCCA
GTAATCGGGACTACTGGTTGGGCAAATGACGCATATCAGATGTATGGGAC
TAGTAATCACACATGCAACAACTTTCAAGCACAGGATTCATCCCGATGCT
GTCCTTGTCGGAGCCAAGAAGGTGAGAGGCCGTGGGTTCGGTAAGACAAG
ACGAAGACAGAAAGCCTTATCGACTTGACGACATGGCCCAGCCACGATCA
AGGCATCAATTTCCCCAGCACTACCATTCCACCATATTGCAACAACTCGT
CGTCGTCCTTCTGCTGCTTCTGTTCCCAAGCATAGCGACTTCTTTTTTCC
TGCTGCCTACTGTCCTCCACTGCTCGCTAATCCATCCCCTCATCCCTCTC
GCAGCCGCTCCTAGCAGTACGCAACAGCAGCAAACCCCAGCCCAACGCGT
TCAGCATGCCCTTATGCCTGAGGATATTCTATCAAGCGCTATCGCAGGAC
TCCCTGATCTCAAAGCTGCGCATTTATCAACTGCAGTGCTCCGTCTAGGC
AAGGGACTATTGCAACCCAAGGAAGCTACCCGCCGCCGACAGTTGACACA
GGATAACAAAGCCTTCTACACTCTCCTTGACAAAACACTCACGCTCGTAA
GCATTCCCACCGCGAATCTCGGTCATATCCAGGACTTTTTACTTGGGCTG
GCCTTGCTAGAGCACCCCATATATGACGACCCCACTCTCCAAGCACGCAT
CGAAATGGACCTCTACCGTAATCTTTTGGCTCGACGAGTCGACGAACTCT
CACCCGGTGACATTACCGGGCTCGCCTGGTGCTGGGAGAAGCTCGGTTTT
GAACCCAGACGCCTTCCTTCTGCCTTGGCAGAGGTGACGTCCACCTTGCC
ATTTCGTATTCTGATAGGTGCGTTAAAGACAACAACTGGAGAGGAGGACG
AAAACAAGGACAAGGAGGAAGCGTCCCTCTTAGATCTAGAGGAGTTGCGT
GCCGAGGTGAATCTGAAGCGGGACACAATCCAGTTGTCTCCTGATAAAAC
AATTGAAGAATCTCGTTTGACGGCATGGCAAGGCACGCAGCCATTTAATT
ACAGTGGGAAGCAAATGCCTGCGCGACCGATGACCCCGAGAATTTCTCGG
ATACGGGATAGGCTGGAGATTTTGACGGGGGTGCGGTATGACTGTGTATT
GATAAATATGTACGAAACGGGCAAGACGGGCATGAGGTATCATGTAGATC
CGGATCAAGGTATGTGCTGGTGGTGATGGAGGGTCGCGGGGAGAGAGGTG
GTGTCTGTGTGTTGCTTCCTCTTTTTGGTTTGTAGGGAGTATGGCATGGA
AGTGTGCGAGACGAATATGACTTGCTTGCACTTCCATACAGATCTGGGCG
AAGAGAAATGTCCGCGCCGGTGGTGATAAGATAATACGGAGGAGGAGGGA
GTTTGCTGGGTTTGTGATGGATGCTCAAACGCCGACGACCGGTCGTTTCC
TTCTCCTTTGCTGCCCCGTTATGGCCCTGAAAGATTCATTTTTGTCCCTC
TCTGCTTCCTATCCATGCCGTGTCCCCCCTAATTCTGACCTACAGGTGTC
TATTGGTCGACCAATACGGTGGTAGTAAGCATTGGCGACACCAGGGAATT
CTGCCTTCGAGAGATCGAGGAGAAGGCGGAGGAAGCCACCTTCAGCAAAC
GCCGGGGCGGAAGCAGCATGAGCAACACGAGCAATAGTTTCAGTACCAGC
GATGGTGACGGTAAAAGCGAGACAATAAATGTAACAAAAAAGAAGAAGGG
AAAACAAAACTCACACCACCGATTTTTCGTCGCACAGAACGACGTCACTG
AAATGACGGGGGAGTGTCAATGGCGGTACCAGCACGCCGTGAGAGTGTGC
GATAATGCTGATGACGCTGGCCCTAGAATGAGCCTTGTATATAAACAGAG
CTTGGGACAGGCGACGGAGGAGGAACGAAAGTGGGTCGCTTCCTATTTGC
GACAAAAGGGTGGAGGGAAGAGCGGTGGCTGA
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Coding sequence (CDS) from alignment at chr7:829872..832003-

>NO07G02950.1 ID=NO07G02950.1|Name=NO07G02950.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr7:829872..832003- (Nannochloropsis oceanica)
ATGTGCCTAATAAAGTCGGAAATTCGGAAGGGTGCATTCAAAAGAATCAA
GACAAGACAAGTGGCAGGGCGGTGTAACTCGGCCCCGGGCCCCGGGCCCC
TGGCGGGGCTTCGAACTTCGAAGTTGGACTTGTCGGCGACAGGCAGTCCA
GTAATCGGGACTACTGGTTGGGCAAATGACGCATATCAGATGTATGGGAC
TAGTAATCACACATGCAACAACTTTCAAGCACAGGATTCATCCCGATGCT
GTCCTTGTCGGAGCCAAGAAGCCGCTCCTAGCAGTACGCAACAGCAGCAA
ACCCCAGCCCAACGCGTTCAGCATGCCCTTATGCCTGAGGATATTCTATC
AAGCGCTATCGCAGGACTCCCTGATCTCAAAGCTGCGCATTTATCAACTG
CAGTGCTCCGTCTAGGCAAGGGACTATTGCAACCCAAGGAAGCTACCCGC
CGCCGACAGTTGACACAGGATAACAAAGCCTTCTACACTCTCCTTGACAA
AACACTCACGCTCGTAAGCATTCCCACCGCGAATCTCGGTCATATCCAGG
ACTTTTTACTTGGGCTGGCCTTGCTAGAGCACCCCATATATGACGACCCC
ACTCTCCAAGCACGCATCGAAATGGACCTCTACCGTAATCTTTTGGCTCG
ACGAGTCGACGAACTCTCACCCGGTGACATTACCGGGCTCGCCTGGTGCT
GGGAGAAGCTCGGTTTTGAACCCAGACGCCTTCCTTCTGCCTTGGCAGAG
GTGACGTCCACCTTGCCATTTCGTATTCTGATAGGTGCGTTAAAGACAAC
AACTGGAGAGGAGGACGAAAACAAGGACAAGGAGGAAGCGTCCCTCTTAG
ATCTAGAGGAGTTGCGTGCCGAGGTGAATCTGAAGCGGGACACAATCCAG
TTGTCTCCTGATAAAACAATTGAAGAATCTCGTTTGACGGCATGGCAAGG
CACGCAGCCATTTAATTACAGTGGGAAGCAAATGCCTGCGCGACCGATGA
CCCCGAGAATTTCTCGGATACGGGATAGGCTGGAGATTTTGACGGGGGTG
CGGTATGACTGTGTATTGATAAATATGTACGAAACGGGCAAGACGGGCAT
GAGGTATCATGTAGATCCGGATCAAGGTGTCTATTGGTCGACCAATACGG
TGGTAGTAAGCATTGGCGACACCAGGGAATTCTGCCTTCGAGAGATCGAG
GAGAAGGCGGAGGAAGCCACCTTCAGCAAACGCCGGGGCGGAAGCAGCAT
GAGCAACACGAGCAATAGTTTCAGTACCAGCGATGGTGACGGTAAAAGCG
AGACAATAAATGTAACAAAAAAGAAGAAGGGAAAACAAAACTCACACCAC
CGATTTTTCGTCGCACAGAACGACGTCACTGAAATGACGGGGGAGTGTCA
ATGGCGGTACCAGCACGCCGTGAGAGTGTGCGATAATGCTGATGACGCTG
GCCCTAGAATGAGCCTTGTATATAAACAGAGCTTGGGACAGGCGACGGAG
GAGGAACGAAAGTGGGTCGCTTCCTATTTGCGACAAAAGGGTGGAGGGAA
GAGCGGTGGCTGA
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Synonyms
Publications