NO07G02940.1, NO07G02940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02940.1
Unique NameNO07G02940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2168
Alignment locationchr7:827244..829596 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:827244..829596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02940.1 vs.
Match: EWM27123.1 (hypothetical protein Naga_100046g16 [Nannochloropsis gaditana])

HSP 1 Score: 207.6 bits (527), Expect = 6.900e-50
Identity = 163/392 (41.58%), Postives = 229/392 (58.42%), Query Frame = 0 
Query:   13 EPWKGH-TSMSPAQQLHHHRVLTCLLFDPALERREREVATDKAVTVTAQQARRDRLLLVEALKEQHKQQLAEEVAMMNKRVEETQAWVRREIENLRPVALAVVVKEYEKAMEYVQQQQQNGRGGGEREGGRRGGRFRLEEEEDGDEMEYESGMYVGDRQEEMHVNLLGGAGGVGGGMEGG----------LSPPSPLLTKKRASPMTNSGGE----QPQRSKKKRKGQKQQQQQQQQLMGRGRRSMEEELIAMMMDRGGIEGKGGEGGGGRGRVEEGEGFDRDGMAQEVMSSLNQVLLQKQLTAALAASTREYERERQHALNEEIEKRVKQAVGQIEREMKSEFECILEEEKEKVRILTEVAADQARKEMEENLREEHKEEIQALMQKVGLA 390
            E W+ H  S+SPA++ +H+ VL+ LLFDP +E  E E+    A+   A+QARRDRLLL +ALK++H+Q+L EE+A++ KRVEE Q WV+ EI +L+PVAL  VV EYE AME+          G     GR+      + E +  E      M   D +E    N L G      G++            LS  +PL TK+ ASPMT S        P R K  R             +G  ++ + E+L+ +M+          + GG R R+    G + +G+ QEV+ SLNQ +LQKQL+ ALAA+ +E E+ER  ALN+E+EKR+K A+ Q++ EM +EFE  L+EEKEKVR+LTEVA D+ R+E+EE L+EEH  E+  ++QKVGLA
Sbjct:    7 EAWENHFDSLSPARKRYHYTVLSALLFDPEVELCELEMIKADAMKAVARQARRDRLLLNDALKKEHEQELTEEIAVIEKRVEEMQVWVQNEIASLKPVALQKVVSEYEHAMEHFYLH------GDTNTKGRKHSFLLFDNEAEEFEEIGSEKMDTYDSEE----NELDGRDSALAGVDVSERETDMTDYTLSSLNPLSTKRLASPMTTSESNGDFLPPLRKKNTRSST----------LGNLKQRVVEDLVDVMVG-------APDRGGRRSRL----GLEPEGLVQEVIGSLNQAMLQKQLSTALAAAKQECEQERHRALNDEMEKRLKTALEQMQCEMSAEFENHLQEEKEKVRVLTEVAMDEQRRELEERLKEEHAREMAEVLQKVGLA 367
The following BLAST results are available for this feature:
BLAST of NO07G02940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27123.16.900e-5041.58hypothetical protein Naga_100046g16 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02940NO07G02940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02940.1NO07G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02940.1.cds1NO07G02940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02940.1.cds2NO07G02940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02940.1 ID=NO07G02940.1|Name=NO07G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp
CCTTTCCCTGCTCACCTTGCGAAGCTGTGTCATAGACACGAGCAAGCCAA
ATTACTTGGAGCAAAATCTAGTCAATCCTCCCTTTTCCCCTATCCTGTCT
TCCCTTGCTTGCTCCTCTTGCTCTTGCTCTTCCTTGAGTCCTTCCTCTCC
AATCCTCCTCCCTCCCTCCCTCCTCATCACTCCTGTAGCACTGCAGCCCA
AGCATGAAGACTTTCGAGACCACCTCTACCCCAGCGATGGAGCCCTGGAA
AGGTCACACCTCCATGTCCCCCGCTCAGCAGCTTCATCATCACCGTGTTC
TGACGTGCCTCCTTTTCGACCCTGCCTTGGAGCGCCGGGAGCGTGAAGTG
GCCACCGACAAGGCCGTCACCGTCACCGCTCAACAAGCCCGCCGGGACCG
CTTGCTCCTGGTCGAGGCTTTGAAGGAACAGCATAAACAGCAGCTGGCCG
AGGAGGTTGCAATGATGAACAAAAGAGTGGAAGAGACGCAGGCCTGGGTG
CGACGGGAGATAGAAAACCTGCGGCCGGTGGCGCTGGCGGTAGTGGTCAA
AGAGTACGAGAAAGCCATGGAATATGTGCAACAGCAGCAGCAGAACGGCA
GAGGAGGAGGGGAGAGAGAAGGAGGAAGGAGAGGAGGGCGTTTCCGTCTT
GAGGAGGAGGAGGACGGCGACGAAATGGAATATGAGAGTGGAATGTATGT
AGGTGATAGACAGGAGGAGATGCATGTAAATCTCCTCGGAGGAGCAGGAG
GAGTAGGAGGAGGGATGGAGGGAGGCCTCTCTCCCCCCTCTCCCCTCTTG
ACGAAGAAACGTGCAAGTCCTATGACAAATTCCGGCGGGGAGCAGCCACA
AAGGAGTAAGAAGAAGAGAAAGGGACAGAAGCAGCAGCAGCAGCAGCAGC
AGCAGTTGATGGGTCGTGGTCGTCGTTCGATGGAGGAAGAGTTGATAGCC
ATGATGATGGACAGGGGAGGAATAGAAGGAAAAGGAGGAGAAGGAGGAGG
AGGAAGAGGGAGGGTTGAGGAAGGAGAAGGATTCGACCGTGATGGGATGG
CACAGGAGGTTATGAGCTCATTGAATCAAGTCTTGCTTCAGAAACAGCTC
ACCGCCGCATTGGCGGCATCCACGCGGGAGTACGAGCGAGAAAGGCAACA
TGCCTTGAATGAGGAGATAGAGAAAAGGGTGAAGCAGGCCGTTGGTCAGA
TCGAGAGGGAAATGAAGAGTGAGTTTGAGTGTATCCTTGAGGAAGAGAAG
GAGAAGGTGAGGATTCTGACGGAGGTGGCAGCCGATCAAGCGCGGAAGGA
GATGGAAGAGAATCTCCGGGAGGAGCATAAGGAGGAGATTCAGGCATTGA
TGCAGAAGGTGGGGCTGGCCTAAGGAGGGGAGGAGAGAAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAAGGAGTGACAGATACAGATGTGAGGGAGTGCAT
AGTGGTATCAGTATGAGAAGCATTAGCAGCCAGGGCAGGGGGAGGGAGGG
AGGGAGGGGAGAAGGGAGGGAAGCGCTCGGTGAGTGAGGACCACCAAGAG
ACTCTGCCGTTTCCAAGGGGTGTGTAAAATAAATTGTCAAGGGACTCTCA
GTGGGGTCGGAGGTGCGAACATGCAGGAACCAAGACGGATGGATCTTGAA
CCAGTCAGGTACACGCTGTTCTCTGCCATGTGGTGCTATGCTGTGTAATG
AAAGCCGTTGTTGCCAATGTGTATGTGTCAAGGGCGGAAATGGATGGAGT
GTAGCAGAGACATGGGGATTGTCCTTCGAACACAAGTTTCAAATGATTGG
AGGGATGTAAACATATATATGCATATATATATACATGTGTGTGTGTGTGT
GTGTGAAAAAGAGTTTTCGTGCTTGCGTGGATAGGGAAGAGGAAAACAAA
CACGAGGGAGTGGAGGGGGTCTATCGCAACTCCAATGGAAAAAAAAGCCA
CGGCCCACGAGCCAGCTGATTGGTGGCCTGGACAATGACAGCAAAAAGTG
ACCGAGCGGACGCCGACCCTGACGCGTCTAATCTCCGTAGGAAGGAGCAG
CACGGCATTGGAGCAACCAACCATACCCCCCGCTTCTCAAAAAAGGACCA
AACAAAACGAATGCATGTGACTCAAGCTGTGCATGCCGCGACAGCAACCG
GACACCATGCACCCAAGC
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protein sequence of NO07G02940.1

>NO07G02940.1-protein ID=NO07G02940.1-protein|Name=NO07G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MKTFETTSTPAMEPWKGHTSMSPAQQLHHHRVLTCLLFDPALERREREVA
TDKAVTVTAQQARRDRLLLVEALKEQHKQQLAEEVAMMNKRVEETQAWVR
REIENLRPVALAVVVKEYEKAMEYVQQQQQNGRGGGEREGGRRGGRFRLE
EEEDGDEMEYESGMYVGDRQEEMHVNLLGGAGGVGGGMEGGLSPPSPLLT
KKRASPMTNSGGEQPQRSKKKRKGQKQQQQQQQQLMGRGRRSMEEELIAM
MMDRGGIEGKGGEGGGGRGRVEEGEGFDRDGMAQEVMSSLNQVLLQKQLT
AALAASTREYERERQHALNEEIEKRVKQAVGQIEREMKSEFECILEEEKE
KVRILTEVAADQARKEMEENLREEHKEEIQALMQKVGLA*
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mRNA from alignment at chr7:827244..829596+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02940.1 ID=NO07G02940.1|Name=NO07G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2353bp|location=Sequence derived from alignment at chr7:827244..829596+ (Nannochloropsis oceanica)
CCTTTCCCTGCTCACCTTGCGAAGCTGTGTCATAGACACGAGCAAGCCAA
ATTACTTGGAGCAAAATCTAGTCAATCCTCCCTTTTCCCCTATCCTGTCT
TCCCTTGCTTGCTCCTCTTGCTCTTGCTCTTCCTTGAGTCCTTCCTCTCC
AATCCTCCTCCCTCCCTCCCTCCTCATCACTCCTGTAGCACTGCAGCCCA
AGCATGAAGACTTTCGAGACCACCTCTACCCCAGCGATGGAGCCCTGGAA
AGGTCACACCTCCATGTCCCCCGCTCAGCAGCTTCATCATCACCGTGTTC
TGACGTGCCTCCTTTTCGACCCTGCCTTGGAGCGCCGGGAGCGTGAAGTG
GCCACCGACAAGGCCGTCACCGTCACCGCTCAACAAGCCCGCCGGGACCG
CTTGCTCCTGGTCGAGGCTTTGAAGGAACAGCATAAACAGCAGCTGGCCG
AGGAGGTTGCAATGATGAACAAAAGAGTGGAAGAGACGCAGGTACTTTTT
GTTGCTCCTTCCTTGTCTATTCTCTCCTTTTCCCCTCAACCTGCGATCAT
CCCATCCACCCACACTAGTGATCCACCGTCAGTGCTTACAACCATATTTA
GCCCCAAAATGTTAGCACATTTCCTTGCCCTCATTGCAATCCTCTCTCAC
ATTTGCTCTCTCCCCTCCCTCTCCAGGCCTGGGTGCGACGGGAGATAGAA
AACCTGCGGCCGGTGGCGCTGGCGGTAGTGGTCAAAGAGTACGAGAAAGC
CATGGAATATGTGCAACAGCAGCAGCAGAACGGCAGAGGAGGAGGGGAGA
GAGAAGGAGGAAGGAGAGGAGGGCGTTTCCGTCTTGAGGAGGAGGAGGAC
GGCGACGAAATGGAATATGAGAGTGGAATGTATGTAGGTGATAGACAGGA
GGAGATGCATGTAAATCTCCTCGGAGGAGCAGGAGGAGTAGGAGGAGGGA
TGGAGGGAGGCCTCTCTCCCCCCTCTCCCCTCTTGACGAAGAAACGTGCA
AGTCCTATGACAAATTCCGGCGGGGAGCAGCCACAAAGGAGTAAGAAGAA
GAGAAAGGGACAGAAGCAGCAGCAGCAGCAGCAGCAGCAGTTGATGGGTC
GTGGTCGTCGTTCGATGGAGGAAGAGTTGATAGCCATGATGATGGACAGG
GGAGGAATAGAAGGAAAAGGAGGAGAAGGAGGAGGAGGAAGAGGGAGGGT
TGAGGAAGGAGAAGGATTCGACCGTGATGGGATGGCACAGGAGGTTATGA
GCTCATTGAATCAAGTCTTGCTTCAGAAACAGCTCACCGCCGCATTGGCG
GCATCCACGCGGGAGTACGAGCGAGAAAGGCAACATGCCTTGAATGAGGA
GATAGAGAAAAGGGTGAAGCAGGCCGTTGGTCAGATCGAGAGGGAAATGA
AGAGTGAGTTTGAGTGTATCCTTGAGGAAGAGAAGGAGAAGGTGAGGATT
CTGACGGAGGTGGCAGCCGATCAAGCGCGGAAGGAGATGGAAGAGAATCT
CCGGGAGGAGCATAAGGAGGAGATTCAGGCATTGATGCAGAAGGTGGGGC
TGGCCTAAGGAGGGGAGGAGAGAAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAAGGAGTGACAGATACAGATGTGAGGGAGTGCATAGTGGTATCAGTATG
AGAAGCATTAGCAGCCAGGGCAGGGGGAGGGAGGGAGGGAGGGGAGAAGG
GAGGGAAGCGCTCGGTGAGTGAGGACCACCAAGAGACTCTGCCGTTTCCA
AGGGGTGTGTAAAATAAATTGTCAAGGGACTCTCAGTGGGGTCGGAGGTG
CGAACATGCAGGAACCAAGACGGATGGATCTTGAACCAGTCAGGTACACG
CTGTTCTCTGCCATGTGGTGCTATGCTGTGTAATGAAAGCCGTTGTTGCC
AATGTGTATGTGTCAAGGGCGGAAATGGATGGAGTGTAGCAGAGACATGG
GGATTGTCCTTCGAACACAAGTTTCAAATGATTGGAGGGATGTAAACATA
TATATGCATATATATATACATGTGTGTGTGTGTGTGTGTGAAAAAGAGTT
TTCGTGCTTGCGTGGATAGGGAAGAGGAAAACAAACACGAGGGAGTGGAG
GGGGTCTATCGCAACTCCAATGGAAAAAAAAGCCACGGCCCACGAGCCAG
CTGATTGGTGGCCTGGACAATGACAGCAAAAAGTGACCGAGCGGACGCCG
ACCCTGACGCGTCTAATCTCCGTAGGAAGGAGCAGCACGGCATTGGAGCA
ACCAACCATACCCCCCGCTTCTCAAAAAAGGACCAAACAAAACGAATGCA
TGTGACTCAAGCTGTGCATGCCGCGACAGCAACCGGACACCATGCACCCA
AGC
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Coding sequence (CDS) from alignment at chr7:827244..829596+

>NO07G02940.1 ID=NO07G02940.1|Name=NO07G02940.1|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at chr7:827244..829596+ (Nannochloropsis oceanica)
ATGAAGACTTTCGAGACCACCTCTACCCCAGCGATGGAGCCCTGGAAAGG
TCACACCTCCATGTCCCCCGCTCAGCAGCTTCATCATCACCGTGTTCTGA
CGTGCCTCCTTTTCGACCCTGCCTTGGAGCGCCGGGAGCGTGAAGTGGCC
ACCGACAAGGCCGTCACCGTCACCGCTCAACAAGCCCGCCGGGACCGCTT
GCTCCTGGTCGAGGCTTTGAAGGAACAGCATAAACAGCAGCTGGCCGAGG
AGGTTGCAATGATGAACAAAAGAGTGGAAGAGACGCAGGCCTGGGTGCGA
CGGGAGATAGAAAACCTGCGGCCGGTGGCGCTGGCGGTAGTGGTCAAAGA
GTACGAGAAAGCCATGGAATATGTGCAACAGCAGCAGCAGAACGGCAGAG
GAGGAGGGGAGAGAGAAGGAGGAAGGAGAGGAGGGCGTTTCCGTCTTGAG
GAGGAGGAGGACGGCGACGAAATGGAATATGAGAGTGGAATGTATGTAGG
TGATAGACAGGAGGAGATGCATGTAAATCTCCTCGGAGGAGCAGGAGGAG
TAGGAGGAGGGATGGAGGGAGGCCTCTCTCCCCCCTCTCCCCTCTTGACG
AAGAAACGTGCAAGTCCTATGACAAATTCCGGCGGGGAGCAGCCACAAAG
GAGTAAGAAGAAGAGAAAGGGACAGAAGCAGCAGCAGCAGCAGCAGCAGC
AGTTGATGGGTCGTGGTCGTCGTTCGATGGAGGAAGAGTTGATAGCCATG
ATGATGGACAGGGGAGGAATAGAAGGAAAAGGAGGAGAAGGAGGAGGAGG
AAGAGGGAGGGTTGAGGAAGGAGAAGGATTCGACCGTGATGGGATGGCAC
AGGAGGTTATGAGCTCATTGAATCAAGTCTTGCTTCAGAAACAGCTCACC
GCCGCATTGGCGGCATCCACGCGGGAGTACGAGCGAGAAAGGCAACATGC
CTTGAATGAGGAGATAGAGAAAAGGGTGAAGCAGGCCGTTGGTCAGATCG
AGAGGGAAATGAAGAGTGAGTTTGAGTGTATCCTTGAGGAAGAGAAGGAG
AAGGTGAGGATTCTGACGGAGGTGGCAGCCGATCAAGCGCGGAAGGAGAT
GGAAGAGAATCTCCGGGAGGAGCATAAGGAGGAGATTCAGGCATTGATGC
AGAAGGTGGGGCTGGCCTAA
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Synonyms
Publications