NO07G02900.1, NO07G02900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02900.1
Unique NameNO07G02900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1660
Alignment locationchr7:817330..819093 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:817330..819093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02900.1 vs.
Match: EWM27119.1 (nad dependent steroid dehydrogenase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 790.8 bits (2041), Expect = 2.500e-225
Identity = 400/491 (81.47%), Postives = 433/491 (88.19%), Query Frame = 0 
Query:   12 DAESFSTSAVMVVMAVVLLALLMVV--KPSSSSCSIKLDPKAPVPILVEVPDEVLHRRLKYKLPKKAMVTGGNGFVGRRIVSMLLEQGCEVTVFDISGGFQNEPRVKMVVGNLVDPVDVAKAVVGIEVVYHVAAPHASHPPAVQYAVNVTGTQNLLQASAAAGVKRFVFTSSASVVYEGRDQAGADEATPIPTASLDSYTKTKAEAEALVLAANGQEGMLTAAIRPHGIFGPGDRQFFPVLVESARKGKTKYALGEGKNVADFTFVGNVAHAHLLAAEKLGVVKGVDGQAFFITNDAPLPFWDFLAKVLTGFGYAAPSVRLPAGAMAVIGGGMDGLAAILRKIGVVFQPTFTRSRVQYLTTHHYYSIEKAKRLLGYEPAWTQEEALALCFQEMMPELVNSRAPKPRRATVKKWEVIPRFTMEQVARHKKREDAWIVVDGKVYDVTEYVDVHPGDDAILNFVGQDSSKGFHGPQHPVSVWDVIAEYEIGALA 501
            D  SF T    V + VV   LL ++  K  SSS S  LD KAPVP+LVEVPD VL+RR KY LP +A+VTGGNGFVGRRIV+MLLEQGC+VTVFDI+ GF++EPRVKMVVGNLV+  DVAKAV GIEVVYHVAAPHASHPPAVQ+AVNVTGT+ LLQASAAAGVK+FVFTSSASVVYEG +QAG DE+TPIPTASLDSYTKTKAEAEALVLAANGQ GM TAAIRPHGIFGPGDRQFFPVLVESARKGKTKYALGEG+NVADFTFVGNVAHAHLLAAEKLG V GVDGQAFF+TNDAP+PFWDFLA+VLTGFGY APSVRLPAG M V+GG MDG+A +LR +GV FQPTFTRSRVQYLTTHHYYSIEKAKRLLGY PAW+QEEALALCFQ MMP L N RAPKPRR TVKK + +P + M+QV+RH  R DAWIVVDGKVYDVTEYVDVHPGDDAIL FVG DSSKGFHGPQHPVSVWDVIAEYEIGA+A
Sbjct:    4 DDSSFLTPPHAVTIGVVAACLLAIIFIKAKSSSTSTTLDSKAPVPVLVEVPDAVLNRRFKYDLPNRALVTGGNGFVGRRIVAMLLEQGCDVTVFDITKGFEDEPRVKMVVGNLVETADVAKAVEGIEVVYHVAAPHASHPPAVQFAVNVTGTRALLQASAAAGVKKFVFTSSASVVYEGGNQAGVDESTPIPTASLDSYTKTKAEAEALVLAANGQHGMHTAAIRPHGIFGPGDRQFFPVLVESARKGKTKYALGEGRNVADFTFVGNVAHAHLLAAEKLGKVPGVDGQAFFVTNDAPVPFWDFLAQVLTGFGYPAPSVRLPAGLMTVVGGWMDGMATLLRMVGVRFQPTFTRSRVQYLTTHHYYSIEKAKRLLGYAPAWSQEEALALCFQCMMPALANPRAPKPRRVTVKKGQSVPVYRMQQVSRHNTRGDAWIVVDGKVYDVTEYVDVHPGDDAILRFVGGDSSKGFHGPQHPVSVWDVIAEYEIGAVA 494
The following BLAST results are available for this feature:
BLAST of NO07G02900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27119.12.500e-22581.47nad dependent steroid dehydrogenase-like protein [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02900NO07G02900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02900.1NO07G02900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02900.1.cds1NO07G02900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02900.1.cds2NO07G02900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02900.1 ID=NO07G02900.1|Name=NO07G02900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1660bp
CACCAGCACACAGCCCCTCCTTCCTTGATACACACAAACGACGACACGGG
CGAACCAACATTAGCCACCTTTCTGCCTTCCTATTCCGAATGCCCGTCAG
CTACGCGATGCTTCCCTTATTTGACGCCGAGTCTTTCTCGACTTCGGCCG
TGATGGTCGTCATGGCAGTCGTACTGCTCGCCCTGTTGATGGTTGTTAAG
CCCTCCTCCTCCTCCTGCTCAATCAAGCTCGACCCCAAGGCCCCTGTCCC
CATCCTTGTCGAAGTCCCCGACGAGGTTCTGCACCGCCGCCTCAAGTATA
AGCTCCCTAAAAAAGCGATGGTCACTGGCGGGAACGGTTTTGTGGGCCGG
CGCATTGTCTCAATGCTCCTCGAACAAGGCTGCGAAGTCACCGTCTTTGA
CATCTCGGGGGGGTTCCAAAACGAACCCCGCGTCAAGATGGTGGTCGGCA
ACCTAGTCGATCCAGTCGATGTCGCCAAGGCCGTGGTAGGCATCGAGGTT
GTCTATCATGTGGCAGCTCCCCATGCCTCCCATCCTCCTGCTGTCCAATA
TGCGGTCAACGTGACCGGCACCCAAAACCTCCTTCAAGCTTCCGCCGCCG
CTGGGGTCAAACGTTTTGTGTTTACCTCTTCTGCCAGTGTCGTCTACGAG
GGAAGAGATCAAGCAGGCGCGGATGAAGCTACACCTATCCCTACCGCTAG
TCTTGACTCTTACACCAAAACAAAAGCCGAAGCAGAGGCGTTGGTCCTAG
CAGCAAACGGACAAGAAGGCATGCTAACCGCCGCCATTCGCCCCCATGGG
ATCTTCGGACCTGGTGACCGGCAATTTTTTCCCGTCCTTGTGGAAAGTGC
GCGGAAAGGGAAGACTAAGTATGCCTTGGGGGAGGGGAAGAATGTAGCTG
ACTTCACGTTTGTGGGTAACGTTGCTCATGCCCACTTGCTGGCCGCGGAG
AAGCTAGGGGTGGTGAAAGGCGTAGACGGGCAGGCATTTTTCATCACAAA
TGATGCGCCTTTGCCTTTTTGGGATTTTCTGGCAAAGGTATTGACGGGTT
TTGGGTATGCAGCGCCGAGTGTGCGACTGCCAGCGGGGGCCATGGCGGTG
ATAGGAGGGGGGATGGACGGCTTGGCCGCGATTTTGAGGAAGATTGGCGT
GGTGTTTCAACCGACATTCACACGGTCTAGGGTGCAGTACCTGACAACAC
ACCATTATTATAGCATTGAGAAGGCGAAGCGTCTGTTGGGGTACGAGCCG
GCCTGGACGCAAGAAGAGGCTTTGGCGTTGTGTTTCCAGGAGATGATGCC
CGAGCTTGTGAACTCACGCGCGCCAAAGCCTCGACGGGCAACAGTGAAGA
AATGGGAGGTCATCCCGAGATTTACGATGGAACAGGTTGCGAGGCATAAG
AAGAGAGAGGATGCGTGGATCGTCGTTGATGGGAAGGTTTATGACGTGAC
TGAGTACGTGGATGTCCACCCGGGGGACGACGCGATATTGAATTTCGTTG
GCCAAGATTCTAGTAAGGGCTTCCACGGGCCGCAGCACCCTGTAAGTGTG
TGGGATGTGATTGCCGAGTATGAGATTGGGGCGCTGGCATAGTTTGGAAA
GTAAGAGGGAGGAGAGGAGGGAAGGACAAAAGTAAAATTGATTTATTTTT
ATCTGAGCGA
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protein sequence of NO07G02900.1

>NO07G02900.1-protein ID=NO07G02900.1-protein|Name=NO07G02900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MPVSYAMLPLFDAESFSTSAVMVVMAVVLLALLMVVKPSSSSCSIKLDPK
APVPILVEVPDEVLHRRLKYKLPKKAMVTGGNGFVGRRIVSMLLEQGCEV
TVFDISGGFQNEPRVKMVVGNLVDPVDVAKAVVGIEVVYHVAAPHASHPP
AVQYAVNVTGTQNLLQASAAAGVKRFVFTSSASVVYEGRDQAGADEATPI
PTASLDSYTKTKAEAEALVLAANGQEGMLTAAIRPHGIFGPGDRQFFPVL
VESARKGKTKYALGEGKNVADFTFVGNVAHAHLLAAEKLGVVKGVDGQAF
FITNDAPLPFWDFLAKVLTGFGYAAPSVRLPAGAMAVIGGGMDGLAAILR
KIGVVFQPTFTRSRVQYLTTHHYYSIEKAKRLLGYEPAWTQEEALALCFQ
EMMPELVNSRAPKPRRATVKKWEVIPRFTMEQVARHKKREDAWIVVDGKV
YDVTEYVDVHPGDDAILNFVGQDSSKGFHGPQHPVSVWDVIAEYEIGALA
*
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mRNA from alignment at chr7:817330..819093+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02900.1 ID=NO07G02900.1|Name=NO07G02900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp|location=Sequence derived from alignment at chr7:817330..819093+ (Nannochloropsis oceanica)
CACCAGCACACAGCCCCTCCTTCCTTGATACACACAAACGACGACACGGG
CGAACCAACATTAGCCACCTTTCTGCCTTCCTATTCCGAATGCCCGTCAG
CTACGCGATGCTTCCCTTATTTGACGCCGAGTCTTTCTCGACTTCGGCCG
TGATGGTCGTCATGGCAGTCGTACTGCTCGCCCTGTTGATGGTTGTTAAG
GTATGTGTAGTCTATGCTGTGCCAATCAGAGGGTTGGGACATCAAAGGCT
TGCTCCTCCTACCATACTCATCTCCCCTCTTCCCTCCGACCTCCTACACA
CCAGCCCTCCTCCTCCTCCTGCTCAATCAAGCTCGACCCCAAGGCCCCTG
TCCCCATCCTTGTCGAAGTCCCCGACGAGGTTCTGCACCGCCGCCTCAAG
TATAAGCTCCCTAAAAAAGCGATGGTCACTGGCGGGAACGGTTTTGTGGG
CCGGCGCATTGTCTCAATGCTCCTCGAACAAGGCTGCGAAGTCACCGTCT
TTGACATCTCGGGGGGGTTCCAAAACGAACCCCGCGTCAAGATGGTGGTC
GGCAACCTAGTCGATCCAGTCGATGTCGCCAAGGCCGTGGTAGGCATCGA
GGTTGTCTATCATGTGGCAGCTCCCCATGCCTCCCATCCTCCTGCTGTCC
AATATGCGGTCAACGTGACCGGCACCCAAAACCTCCTTCAAGCTTCCGCC
GCCGCTGGGGTCAAACGTTTTGTGTTTACCTCTTCTGCCAGTGTCGTCTA
CGAGGGAAGAGATCAAGCAGGCGCGGATGAAGCTACACCTATCCCTACCG
CTAGTCTTGACTCTTACACCAAAACAAAAGCCGAAGCAGAGGCGTTGGTC
CTAGCAGCAAACGGACAAGAAGGCATGCTAACCGCCGCCATTCGCCCCCA
TGGGATCTTCGGACCTGGTGACCGGCAATTTTTTCCCGTCCTTGTGGAAA
GTGCGCGGAAAGGGAAGACTAAGTATGCCTTGGGGGAGGGGAAGAATGTA
GCTGACTTCACGTTTGTGGGTAACGTTGCTCATGCCCACTTGCTGGCCGC
GGAGAAGCTAGGGGTGGTGAAAGGCGTAGACGGGCAGGCATTTTTCATCA
CAAATGATGCGCCTTTGCCTTTTTGGGATTTTCTGGCAAAGGTATTGACG
GGTTTTGGGTATGCAGCGCCGAGTGTGCGACTGCCAGCGGGGGCCATGGC
GGTGATAGGAGGGGGGATGGACGGCTTGGCCGCGATTTTGAGGAAGATTG
GCGTGGTGTTTCAACCGACATTCACACGGTCTAGGGTGCAGTACCTGACA
ACACACCATTATTATAGCATTGAGAAGGCGAAGCGTCTGTTGGGGTACGA
GCCGGCCTGGACGCAAGAAGAGGCTTTGGCGTTGTGTTTCCAGGAGATGA
TGCCCGAGCTTGTGAACTCACGCGCGCCAAAGCCTCGACGGGCAACAGTG
AAGAAATGGGAGGTCATCCCGAGATTTACGATGGAACAGGTTGCGAGGCA
TAAGAAGAGAGAGGATGCGTGGATCGTCGTTGATGGGAAGGTTTATGACG
TGACTGAGTACGTGGATGTCCACCCGGGGGACGACGCGATATTGAATTTC
GTTGGCCAAGATTCTAGTAAGGGCTTCCACGGGCCGCAGCACCCTGTAAG
TGTGTGGGATGTGATTGCCGAGTATGAGATTGGGGCGCTGGCATAGTTTG
GAAAGTAAGAGGGAGGAGAGGAGGGAAGGACAAAAGTAAAATTGATTTAT
TTTTATCTGAGCGA
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Coding sequence (CDS) from alignment at chr7:817330..819093+

>NO07G02900.1 ID=NO07G02900.1|Name=NO07G02900.1|organism=Nannochloropsis oceanica|type=CDS|length=1503bp|location=Sequence derived from alignment at chr7:817330..819093+ (Nannochloropsis oceanica)
ATGCCCGTCAGCTACGCGATGCTTCCCTTATTTGACGCCGAGTCTTTCTC
GACTTCGGCCGTGATGGTCGTCATGGCAGTCGTACTGCTCGCCCTGTTGA
TGGTTGTTAAGCCCTCCTCCTCCTCCTGCTCAATCAAGCTCGACCCCAAG
GCCCCTGTCCCCATCCTTGTCGAAGTCCCCGACGAGGTTCTGCACCGCCG
CCTCAAGTATAAGCTCCCTAAAAAAGCGATGGTCACTGGCGGGAACGGTT
TTGTGGGCCGGCGCATTGTCTCAATGCTCCTCGAACAAGGCTGCGAAGTC
ACCGTCTTTGACATCTCGGGGGGGTTCCAAAACGAACCCCGCGTCAAGAT
GGTGGTCGGCAACCTAGTCGATCCAGTCGATGTCGCCAAGGCCGTGGTAG
GCATCGAGGTTGTCTATCATGTGGCAGCTCCCCATGCCTCCCATCCTCCT
GCTGTCCAATATGCGGTCAACGTGACCGGCACCCAAAACCTCCTTCAAGC
TTCCGCCGCCGCTGGGGTCAAACGTTTTGTGTTTACCTCTTCTGCCAGTG
TCGTCTACGAGGGAAGAGATCAAGCAGGCGCGGATGAAGCTACACCTATC
CCTACCGCTAGTCTTGACTCTTACACCAAAACAAAAGCCGAAGCAGAGGC
GTTGGTCCTAGCAGCAAACGGACAAGAAGGCATGCTAACCGCCGCCATTC
GCCCCCATGGGATCTTCGGACCTGGTGACCGGCAATTTTTTCCCGTCCTT
GTGGAAAGTGCGCGGAAAGGGAAGACTAAGTATGCCTTGGGGGAGGGGAA
GAATGTAGCTGACTTCACGTTTGTGGGTAACGTTGCTCATGCCCACTTGC
TGGCCGCGGAGAAGCTAGGGGTGGTGAAAGGCGTAGACGGGCAGGCATTT
TTCATCACAAATGATGCGCCTTTGCCTTTTTGGGATTTTCTGGCAAAGGT
ATTGACGGGTTTTGGGTATGCAGCGCCGAGTGTGCGACTGCCAGCGGGGG
CCATGGCGGTGATAGGAGGGGGGATGGACGGCTTGGCCGCGATTTTGAGG
AAGATTGGCGTGGTGTTTCAACCGACATTCACACGGTCTAGGGTGCAGTA
CCTGACAACACACCATTATTATAGCATTGAGAAGGCGAAGCGTCTGTTGG
GGTACGAGCCGGCCTGGACGCAAGAAGAGGCTTTGGCGTTGTGTTTCCAG
GAGATGATGCCCGAGCTTGTGAACTCACGCGCGCCAAAGCCTCGACGGGC
AACAGTGAAGAAATGGGAGGTCATCCCGAGATTTACGATGGAACAGGTTG
CGAGGCATAAGAAGAGAGAGGATGCGTGGATCGTCGTTGATGGGAAGGTT
TATGACGTGACTGAGTACGTGGATGTCCACCCGGGGGACGACGCGATATT
GAATTTCGTTGGCCAAGATTCTAGTAAGGGCTTCCACGGGCCGCAGCACC
CTGTAAGTGTGTGGGATGTGATTGCCGAGTATGAGATTGGGGCGCTGGCA
TAG
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Synonyms
Publications