NO07G02880.1, NO07G02880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02880.1
Unique NameNO07G02880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1065
Alignment locationchr7:814308..815563 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:814308..815563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G02880.1 vs.
Match: EWM27107.1 (diphthine synthase [Nannochloropsis gaditana])

HSP 1 Score: 504.2 bits (1297), Expect = 2.800e-139
Identity = 250/297 (84.18%), Postives = 269/297 (90.57%), Query Frame = 0 
Query:    1 MVLYVVGLGLGDEDDITVRGLKAVQRSEVVFLEAYTSVLGAPKERLETAFGKSIVVADRAMVESEAERIYLPAKDTDVCFLVVGDPLCATTHTDIILRAKEAGIPVEVVHNASVMGAVASCGLQLYSFGCTVSIPLFEGEWRPDSFYSKIAYNRAGGMHTLCLLDIKMKEPDYEQMMRGRVQYLPPRFMTVNVAIEQLLAVEVTKDEGVLLLETPAVGLARLGQPTQQIVAGTLGELLEVDFGRPLHSLVICGEQHPCEVELLQFFHVTRGGWNKYVKPVEDASSSSDEEDETQQQD 298
            MVL+VVGLGLGDEDDITVRGLKAVQRSEV+FLEAYTSVLG PKERLET FGKSIV+ADR MVESEAERIY+PAK+TDVCFLVVGDPLCATTHTDII+RAK  GI VEVVHN SVMGAVASCGLQLYSFG TVSIPLFEGEWRPDSFY KIAYN+AGGMHTLCLLDIKMKEPDYE+MMRGRV+YLPPRFMTVNVAI QLLAVE  + EGVL  ET AVGLARLGQ TQ IV+GTLGELLEVDFG+PLHSLVICGEQHPCEVELL  FHV +GGW++YV+P ++ SSSSD+ DE    D
Sbjct:    1 MVLFVVGLGLGDEDDITVRGLKAVQRSEVIFLEAYTSVLGTPKERLETVFGKSIVIADRNMVESEAERIYMPAKETDVCFLVVGDPLCATTHTDIIIRAKAEGIRVEVVHNTSVMGAVASCGLQLYSFGYTVSIPLFEGEWRPDSFYPKIAYNKAGGMHTLCLLDIKMKEPDYEEMMRGRVRYLPPRFMTVNVAIGQLLAVEAVRGEGVLSRETSAVGLARLGQSTQMIVSGTLGELLEVDFGKPLHSLVICGEQHPCEVELLDMFHVRKGGWSRYVRPDDNTSSSSDDGDEDDGVD 297
The following BLAST results are available for this feature:
BLAST of NO07G02880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27107.12.800e-13984.18diphthine synthase [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02880NO07G02880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02880.1NO07G02880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02880.1.cds1NO07G02880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02880.1.cds2NO07G02880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02880.1 ID=NO07G02880.1|Name=NO07G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp
ACAGCCGACCACACAAAACCACTCGGCAAGATCAAGCTTCCCCTTTCCCA
CATGGTGCTCTACGTGGTGGGTCTAGGCCTGGGGGACGAGGATGACATCA
CGGTGCGTGGGCTCAAGGCTGTCCAACGGAGCGAGGTAGTCTTTCTGGAG
GCCTACACTTCCGTACTTGGCGCTCCCAAGGAGCGCTTGGAAACTGCCTT
CGGAAAGAGCATCGTTGTGGCGGACCGTGCCATGGTAGAGAGCGAAGCAG
AGCGCATTTATCTGCCGGCCAAGGACACGGATGTGTGCTTCTTGGTCGTA
GGCGACCCGCTCTGCGCCACCACTCACACGGACATAATCCTACGTGCAAA
AGAGGCCGGCATTCCCGTAGAAGTCGTACACAACGCCTCGGTCATGGGAG
CTGTCGCCTCATGCGGTTTGCAACTCTACAGTTTTGGATGCACGGTCTCG
ATCCCCTTGTTTGAGGGGGAATGGCGGCCCGACTCGTTTTATTCGAAAAT
TGCCTACAACCGAGCTGGAGGCATGCACACCTTGTGCCTCCTCGACATCA
AAATGAAGGAGCCCGACTACGAACAAATGATGCGTGGGCGTGTCCAATAT
CTCCCACCACGGTTCATGACGGTTAACGTAGCGATTGAGCAGCTGCTGGC
AGTGGAGGTCACGAAGGACGAAGGGGTGCTGTTACTGGAGACGCCTGCAG
TTGGATTAGCGCGATTGGGGCAGCCGACGCAGCAGATCGTGGCAGGAACA
TTGGGCGAACTGTTGGAGGTGGATTTTGGGAGGCCATTACATTCGTTGGT
GATCTGTGGCGAGCAGCATCCCTGTGAAGTTGAGCTGTTGCAATTTTTCC
ATGTCACCAGAGGCGGGTGGAACAAGTACGTCAAACCAGTTGAGGACGCC
AGCAGCAGCAGTGATGAAGAAGACGAGACACAGCAGCAAGATGATGAGTA
GCGAAATGGGGCAGTAGAGCGGCTCGGTCAGTAGTAATTTTAAATCAGAA
TATAAATAGAGTTGGAAAGAGTGAGATGACAAGAAGTAAACAAAAGCATC
CCCGCAGCTGAAGCA
back to top

protein sequence of NO07G02880.1

>NO07G02880.1-protein ID=NO07G02880.1-protein|Name=NO07G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MVLYVVGLGLGDEDDITVRGLKAVQRSEVVFLEAYTSVLGAPKERLETAF
GKSIVVADRAMVESEAERIYLPAKDTDVCFLVVGDPLCATTHTDIILRAK
EAGIPVEVVHNASVMGAVASCGLQLYSFGCTVSIPLFEGEWRPDSFYSKI
AYNRAGGMHTLCLLDIKMKEPDYEQMMRGRVQYLPPRFMTVNVAIEQLLA
VEVTKDEGVLLLETPAVGLARLGQPTQQIVAGTLGELLEVDFGRPLHSLV
ICGEQHPCEVELLQFFHVTRGGWNKYVKPVEDASSSSDEEDETQQQDDE*
back to top

mRNA from alignment at chr7:814308..815563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02880.1 ID=NO07G02880.1|Name=NO07G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1256bp|location=Sequence derived from alignment at chr7:814308..815563- (Nannochloropsis oceanica)
ACAGCCGACCACACAAAACCACTCGGCAAGATCAAGCTTCCCCTTTCCCA
CATGGTGCTCTACGTGGTGGGTCTAGGCCTGGGGGACGAGGATGACATCA
CGGTGCGTGGGCTCAAGGCTGTCCAACGGAGCGAGGTAGTCTTTCTGGAG
GCCTACACTTCCGTACTTGGCGCTCCCAAGGAGCGCTTGGAAACTGCCTT
CGGAAAGAGCATCGTTGTGGCGGACCGTGCCATGGTAGAGAGCGAAGCAG
AGCGCATTTATCTGCCGGCCAAGGACACGGATGTGTGCTTCTTGGTCGTA
GGCGACCCGCTCTGCGCCACCACTCACACGGACATAATCCTACGTGCAAA
AGAGGCCGGCATTCCCGTAGAAGTCGTACACAACGCCTCGGTCATGGGAG
CTGTCGCCTCATGCGGTTTGCAACTCTACAGTTTTGGATGCACGGTCTCG
ATCCCCTTGTTTGAGGGGGAATGGCGGCCCGACTCGTTTTATTCGAAAAT
TGCCTACAACCGAGCTGGAGGCATGCACACCTTGTGCCTCCTCGACATCA
AAATGAAGGAGCCCGACTACGAACAAATGATGCGTGGGCGTGTCCAATAT
CTCCCACCACGGTTCATGACGGTTAACGTAGCGATTGAGCAGCTGCTGGC
AGTGGAGGTCACGAAGGACGAAGGGGTGCTGTTACTGGAGACGCCTGCAG
TTGGATTAGCGCGATTGGGGCAGCCGACGCAGCAGATCGTGGCAGGAACA
TTGGGCGAACTGTTGGAGGTGGATTTTGGGAGGCCATTACATTCGTTGGT
GATCTGTGGCGAGCAGCATCCCTGTGAAGTTGAGCTGTTGCAATTTTTCC
ATGTCACCAGAGGTGAGTGAGAGGGCATGGTGAAAGCTTTACTTCTGTCG
TCCTGGGTCATTCTTCTGAATCTTCGAGTCAAACATAATTAATGCTTTTG
GCCTCTTTGCATCGATGTAACTTCCTGATGTCACATGTATTGATCATGCT
CTCTTACCTTCTTCTCCTCCCCTTTTTCCCTCCTACCTACCCTCCCTCCC
TAGGCGGGTGGAACAAGTACGTCAAACCAGTTGAGGACGCCAGCAGCAGC
AGTGATGAAGAAGACGAGACACAGCAGCAAGATGATGAGTAGCGAAATGG
GGCAGTAGAGCGGCTCGGTCAGTAGTAATTTTAAATCAGAATATAAATAG
AGTTGGAAAGAGTGAGATGACAAGAAGTAAACAAAAGCATCCCCGCAGCT
GAAGCA
back to top

Coding sequence (CDS) from alignment at chr7:814308..815563-

>NO07G02880.1 ID=NO07G02880.1|Name=NO07G02880.1|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at chr7:814308..815563- (Nannochloropsis oceanica)
ATGGTGCTCTACGTGGTGGGTCTAGGCCTGGGGGACGAGGATGACATCAC
GGTGCGTGGGCTCAAGGCTGTCCAACGGAGCGAGGTAGTCTTTCTGGAGG
CCTACACTTCCGTACTTGGCGCTCCCAAGGAGCGCTTGGAAACTGCCTTC
GGAAAGAGCATCGTTGTGGCGGACCGTGCCATGGTAGAGAGCGAAGCAGA
GCGCATTTATCTGCCGGCCAAGGACACGGATGTGTGCTTCTTGGTCGTAG
GCGACCCGCTCTGCGCCACCACTCACACGGACATAATCCTACGTGCAAAA
GAGGCCGGCATTCCCGTAGAAGTCGTACACAACGCCTCGGTCATGGGAGC
TGTCGCCTCATGCGGTTTGCAACTCTACAGTTTTGGATGCACGGTCTCGA
TCCCCTTGTTTGAGGGGGAATGGCGGCCCGACTCGTTTTATTCGAAAATT
GCCTACAACCGAGCTGGAGGCATGCACACCTTGTGCCTCCTCGACATCAA
AATGAAGGAGCCCGACTACGAACAAATGATGCGTGGGCGTGTCCAATATC
TCCCACCACGGTTCATGACGGTTAACGTAGCGATTGAGCAGCTGCTGGCA
GTGGAGGTCACGAAGGACGAAGGGGTGCTGTTACTGGAGACGCCTGCAGT
TGGATTAGCGCGATTGGGGCAGCCGACGCAGCAGATCGTGGCAGGAACAT
TGGGCGAACTGTTGGAGGTGGATTTTGGGAGGCCATTACATTCGTTGGTG
ATCTGTGGCGAGCAGCATCCCTGTGAAGTTGAGCTGTTGCAATTTTTCCA
TGTCACCAGAGGCGGGTGGAACAAGTACGTCAAACCAGTTGAGGACGCCA
GCAGCAGCAGTGATGAAGAAGACGAGACACAGCAGCAAGATGATGAGTAG
back to top
Synonyms
Publications