NO07G02860.1, NO07G02860.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G02860.1
Unique Name	NO07G02860.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3487
Alignment location	chr7:806547..810913 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:806547..810913 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G02860.1 vs.
Match: EWM27101.1 (hypothetical protein Naga_100046g26 [Nannochloropsis gaditana])

HSP 1 Score: 240.7 bits (613), Expect = 3.700e-60
Identity = 137/201 (68.16%), Postives = 157/201 (78.11%), Query Frame = 0

Query:    1 MSMEEHT--LSDSGN--STGSLHDVTDNDASNANAAMAAAAAEEEEGTQHNSSQNVIPTDSLANGLSVAKGLFTSGWSQAKKGLTQMQESETMAKVREASKPLVGAVVEGGKVVGEKLHQSAEAAKPGLEAVGRRVSGAVESLAEKTKPALEKAGDAIKTTTKHVVDEGKPIVKKVGTFINHNMGG-KSEGGGRGDPPTTV 197
            MSMEEHT   S+SG   S G L DV  +D S A AA+A+ A EEE+     SSQNVIP DSLANG SVAKG   SGWSQA+K +  +Q+SE + K+REASKP VGAVVEGGKVVG++LH +AEAAKPGLEAVGRRVSGAVE L+E+T+PALEKAG+ IK TTK VVDEGKP+VKKVG F N N+GG K  GGG GDPPTTV
Sbjct:    1 MSMEEHTTSFSESGRQGSDGGLTDVLKDDESEAAAAVASTATEEEDEGAQPSSQNVIPADSLANGFSVAKGFLASGWSQARKSIATLQDSEAVHKMREASKPFVGAVVEGGKVVGDRLHHTAEAAKPGLEAVGRRVSGAVEHLSERTRPALEKAGETIKKTTKQVVDEGKPMVKKVGDFFNDNLGGKKGGGGGDGDPPTTV 201

The following BLAST results are available for this feature:

BLAST of NO07G02860.1 vs.

BLAST of NO07G02860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27101.1	3.700e-60	68.16	hypothetical protein Naga_100046g26 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G02860	NO07G02860	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G02860.1	NO07G02860.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G02860.1.cds1	NO07G02860.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G02860.1.cds2	NO07G02860.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G02860.1.cds3	NO07G02860.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G02860.1.cds4	NO07G02860.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G02860.1.cds5	NO07G02860.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:806547..810913+
coding sequence from alignment at chr7:806547..810913+

mRNA sequence

>NO07G02860.1 ID=NO07G02860.1|Name=NO07G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=3487bp
TGAGCAAGAAGTTCTTCAAGGGCGAGAGATCCGTGTCACGTAAGTTGTTG
AGTGTTGAATGTATCCCCTTTTCCCCCTTCCTTTCTGATTGGTTCTTTCG
TAAATATCTTGTATAGCGTGCTCATTTACTCGACCTTTTTCCGTAAAAAG
GCTGTTGTGTGTATTTAATACGGCCGGTCGCGCCTGTCGCCCCTACGTCC
GCCCCTATCATCGTACCTTCCGTAACCTCCTCCGTACCCTCCTCCCCCTC
CCCTTCCTCCTCCGCCACCCCTATATCCTCCACCTCCTCCTCGGTCGTCC
CTTCCATAGCCACCTCCTCCCCCTCCTCGCCCTCCTCCATACCCACCCCC
TCCGCCCCTCCCTCCTCCGTATCCCCCTCCTCCACCACCGTAACCCCCCC
TCCTCCGGAGTACCCTCCTCCACTTCCTCCCTCCTCATCCTCCCCGTATG
ACACCATACTCACCTTCAACGTCTTCCCAGCCAGTTCCGTGCCGTGGAAA
AATGAGATCGAAGCATGGGCAGAATTAGGCTCTTCGTACGTGAGCACGCA
TTCGCCTTTGCTTTTACCCGATTCGTCGCGGTACATTTTGATTTTGTAAG
GCCATTGGTCCGGGTAGCTAAGAAAATAAGGAGGGAGGGAGGGAGGGTGG
GAGGGAGAGAGGGGTGACTGAGAATGGAAGAGAAGGTGGAATTTGCATCT
TCGTGGGTCACGTCAAATCGTTTTGGGCCTTCGCATGGCCCGCCCCGGTA
CAGATTGTTTTTGTCGAACATCTGGATCAAGAAGTAGGGAGAAGGGAGGG
AGAAAAAAAGGGAAGGAGGAAAGGATGGGGAGGTGGTACATCTCTTCACC
CAAAGCAACGCACGCGCTCAATATCATTTTCTCTTACCCTCGCTTTTGCT
TCATCTTCTTGACAATACCAATCTGGCCGAAGTATTCCGCAATCTCGGCT
TCAGTTGTTGAGGGACTGAGCCCAGAGATAAAGATAGTGCCGTTAACACG
CAATTTGTCCAACTGGCAAGGGGGGGAGGGAGGGAGGGTGAAGGGAAAAA
TTGAGTAAGGAATGCTAATGTTGTTTATGATGCAGCTGTAGAGGATAGTG
CCCTAAATCTGATAAATCGCTCTGGTTGATACACCGGTTATCCGAATGCA
TAAAAAGGGAGGGAGGACGGCAAGGTTGAGGAAAATTCAAGGGGAAAGAC
TCTCCATAAAAAGAAACCTATGTGCTCCAACTAAACAAGCGGCCCTGGAA
TGAGGAAATTAATCCCAGGGTGCTTATGCGAGTTCGACCGAGTCGTGCCT
CCCTTTCTTCCTTCGAAGAAGAAAAGAGGGGGAAGACGCATCTTGTTCTC
CTCCGGAGTAAACAACTTCGCCCGCACTCATCTCAGCCCACCCTTGCGAG
GGTGGGGGCATGGGAAGCTAACTAGCCGGAGTATGTTCACGTGTGTTTTC
AGTTTATGAAACTGGGTAAATTAAAAAGAAATGACACATCAGTATGTGGG
ACGGGGAAGGACGGAGGGGGGGAGGGAAGAACTGCTCATTATGCTTACCT
AACCCACGGAGTCTTGGCCGCAGTCTCCATCTCCTTCGACAAAACATTAT
CTATCACGCAGCCCAACAAAGCCGTCCATGGCGAACGCGCTTCTTTCCCC
TTTATTCCACTCATCACTTTTATCATCTTTTCATCCCTTTACCCCTTCCG
CCTCACTCACCACGCGACCCAGCTTGTCCCGAATTTCCCGGGAAATATCA
TATTTGCTCAAGTCTTGATAATCCAGCCCCGCCAAATCTGCCACGGTCTC
CACCCCACCCGCCACCAATGTCTGTGCGGATAAGAATGGAAAGTTAATAT
TCATGATTCGTGCGGCTTGCTAAGACTCCCGAGACCCAGCTTGTTCCTTC
GTCATGGCTTACTACCAGCCTCCGCCCTCTCTGCCGCTACACGAGGTGCC
TGACCATCCACTTCTCGCCCCTCTCCACGCCGACCACCGCTCTTTTTACT
CCAGACTCTCTTCTCCTGCATACGACCACCATTCTTTCAACTCCAGCAAT
TCTTCTCCTGCATACCTTCGCAGGCTCCGCGTATGTAGGGCTTAGATGTG
TCAAGAACCGAATAACCTCGCTAGGGTCCTCCGCAGGCTCTGCAGGCGCA
GACGGTTCAGAGGCCGGCGCGGCGTTGCTCTCGCTCATAGTTAATCCAGT
TGCTTTGTCTTCGTGTTGAACAGATTGTCTATTTGGTGTGTGCGCGTGTG
TGAGAAAGGAGGAGATAGGTGGAAGGTTGTTATTGCTCGGTAAGGGAGTT
GTTGTTTTGCGTTGCCAGAAGTCTACACCTCCCCACGAGGCTTATTTCCG
GCGCAGTCAAGCACACGATCAACCGCACCAAACTTCCACTGATCCTTGCA
GGACCTTGTGCGGTAAAGCTTCTTGGTGTGGATTGGCTGCGTCTGTGGTG
GAGAAATTTAGTGTCAACTTAATTATCCAGGATTCAGAAGGAACTTCTTG
AAGAAGCGCTCGCTCGAAGTGATTTTCATTTCTTTATCATTCATGCACTT
CGACACACCCACACCCACTTTCTCGCACCACCGCAGCCACCCACACAAGC
AGCATGTCCATGGAAGAGCACACTCTGTCGGATTCTGGCAACAGCACCGG
CAGCTTGCACGATGTTACGGACAACGATGCCTCTAATGCAAACGCGGCCA
TGGCAGCGGCGGCTGCCGAGGAGGAGGAGGGCACACAGCACAACAGCAGC
CAAAACGTCATTCCCACCGACAGTCTGGCCAACGGGCTAAGCGTCGCCAA
GGGGCTGTTTACCTCCGGGTGGTCGCAAGCGAAAAAAGGCCTGACGCAGA
TGCAGGAATCGGAGACGATGGCGAAAGTCCGTGAGGCCTCCAAGCCGCTG
GTGGGTGCAGTCGTGGAGGGTGGAAAGGTGGTCGGGGAGAAGCTGCACCA
GTCGGCAGAAGCGGCCAAACCTGGACTGGAAGCAGTTGGGAGGCGCGTAT
CGGGCGCGGTGGAGAGTTTAGCCGAGAAGACTAAGCCGGCATTGGAGAAG
GCTGGAGATGCGATCAAGACAACGACGAAGCATGTGGTGGATGAGGGCAA
GCCGATTGTGAAGAAGGTGGGAACATTCATCAATCACAACATGGGCGGCA
AGAGCGAGGGCGGTGGTCGTGGCGATCCGCCCACGACGGTCTAAGCGCAG
CAGCAGTGCAGGTCTAAGGCGGCAGGCTTGTAGAGTGGAGGAAAAGAACA
GAGGGAAACAGAGATGATTGACGTCACAGAAGGGGAGAAATTTACGTGTC
TATCCATAGGATGTGTTATTTGAGATCAAGTTTTTTTGGTGTGGGAATGT
AGGGAAGGTATGGGAGGGGAGAGAGAGAGGGATTGTCGACGTGGAGACCG
CGTCAAATAAAAGCGGGGGCGAAATCAAAACACACCGTCTTTATTCATAT
GGAGTGGAAAGGAACATACACAGGAAGCGTCTCGTGT

protein sequence of NO07G02860.1

>NO07G02860.1-protein ID=NO07G02860.1-protein|Name=NO07G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MSMEEHTLSDSGNSTGSLHDVTDNDASNANAAMAAAAAEEEEGTQHNSSQ
NVIPTDSLANGLSVAKGLFTSGWSQAKKGLTQMQESETMAKVREASKPLV
GAVVEGGKVVGEKLHQSAEAAKPGLEAVGRRVSGAVESLAEKTKPALEKA
GDAIKTTTKHVVDEGKPIVKKVGTFINHNMGGKSEGGGRGDPPTTV*

mRNA from alignment at chr7:806547..810913+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G02860.1 ID=NO07G02860.1|Name=NO07G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=4367bp|location=Sequence derived from alignment at chr7:806547..810913+ (Nannochloropsis oceanica)
TGAGCAAGAAGTTCTTCAAGGGCGAGAGATCCGTGTCACGTAAGTTGTTG
AGTGTTGAATGTATCCCCTTTTCCCCCTTCCTTTCTGATTGGTTCTTTCG
TAAATATCTTGTATAGCGTGCTCATTTACTCGACCTTTTTCCGTAAAAAG
GCTGTTGTGTGTATTTAATACGGCCGGTCGCGCCTGTCGCCCCTACGTCC
GCCCCTATCATCGTACCTTCCGTAACCTCCTCCGTACCCTCCTCCCCCTC
CCCTTCCTCCTCCGCCACCCCTATATCCTCCACCTCCTCCTCGGTCGTCC
CTTCCATAGCCACCTCCTCCCCCTCCTCGCCCTCCTCCATACCCACCCCC
TCCGCCCCTCCCTCCTCCGTATCCCCCTCCTCCACCACCGTAACCCCCCC
TCCTCCGGAGTACCCTCCTCCACTTCCTCCCTCCTCATCCTCCCCGTATG
ACACCATACTCACCTTCAACGTCTTCCCAGCCAGTTCCGTGCCGTGGAAA
AATGAGATCGAAGCATGGGCAGAATTAGGCTCTTCGTACGTGAGCACGCA
TTCGCCTTTGCTTTTACCCGATTCGTCGCGGTACATTTTGATTTTGTAAG
GCCATTGGTCCGGGTAGCTAAGAAAATAAGGAGGGAGGGAGGGAGGGTGG
GAGGGAGAGAGGGGTGACTGAGAATGGAAGAGAAGGTGGAATTTGCATCT
TCGTGGGTCACGTCAAATCGTTTTGGGCCTTCGCATGGCCCGCCCCGGTA
CAGATTGTTTTTGTCGAACATCTGGATCAAGAAGTAGGGAGAAGGGAGGG
AGAAAAAAAGGGAAGGAGGAAAGGATGGGGAGGTGGTACATCTCTTCACC
CAAAGCAACGCACGCGCTCAATATCATTTTCTCTTACCCTCGCTTTTGCT
TCATCTTCTTGACAATACCAATCTGGCCGAAGTATTCCGCAATCTCGGCT
TCAGTTGTTGAGGGACTGAGCCCAGAGATAAAGATAGTGCCGTTAACACG
CAATTTGTCCAACTGGCAAGGGGGGGAGGGAGGGAGGGTGAAGGGAAAAA
TTGAGTAAGGAATGCTAATGTTGTTTATGATGCAGCTGTAGAGGATAGTG
CCCTAAATCTGATAAATCGCTCTGGTTGATACACCGGTTATCCGAATGCA
TAAAAAGGGAGGGAGGACGGCAAGGTTGAGGAAAATTCAAGGGGAAAGAC
TCTCCATAAAAAGAAACCTATGTGCTCCAACTAAACAAGCGGCCCTGGAA
TGAGGAAATTAATCCCAGGGTGCTTATGCGAGTTCGACCGAGTCGTGCCT
CCCTTTCTTCCTTCGAAGAAGAAAAGAGGGGGAAGACGCATCTTGTTCTC
CTCCGGAGTAAACAACTTCGCCCGCACTCATCTCAGCCCACCCTTGCGAG
GGTGGGGGCATGGGAAGCTAACTAGCCGGAGTATGTTCACGTGTGTTTTC
AGTTTATGAAACTGGGTAAATTAAAAAGAAATGACACATCAGTATGTGGG
ACGGGGAAGGACGGAGGGGGGGAGGGAAGAACTGCTCATTATGCTTACCT
AACCCACGGAGTCTTGGCCGCAGTCTCCATCTCCTTCGACAAAACATTAT
CTATCACGCAGCCCAACAAAGCCGTCCATGGCGAACGCGCTTCTTTCCCC
TTTATTCCACTCATCACTTTTATCATCTTTTCATCCCTTTACCCCTTCCG
CCTCACTCACCACGCGACCCAGCTTGTCCCGAATTTCCCGGGAAATATCA
TATTTGCTCAAGTCTTGATAATCCAGCCCCGCCAAATCTGCCACGGTCTC
CACCCCACCCGCCACCAATGTCTGTGCGGATAAGAATGGAAAGTTAATAT
TCATGATTCGTGCGGCTTGCTAAGACTCCCGAGACCCAGCTTGTTCCTTC
GTCATGGCTTACTACCAGCCTCCGCCCTCTCTGCCGCTACACGAGGTGCC
TGACCATCCACTTCTCGCCCCTCTCCACGCCGACCACCGCTCTTTTTACT
CCAGACTCTCTTCTCCTGCATACGACCACCATTCTTTCAACTCCAGCAAT
TCTTCTCCTGCATACCTTCGCAGGCTCCGCGTATGTAGGGCTTAGATGTG
TCAAGAACCGAATAACCTCGCTAGGGTCCTCCGCAGGCTCTGCAGGCGCA
GACGGTTCAGAGGCCGGCGCGGCGTTGCTCTCGCTCATAGTTAATCCAGT
TGCTTTGTCTTCGTGTTGAACAGATTGTCTATTTGGTGTGTGCGCGTGTG
TGAGAAAGGAGGAGATAGGTGGAAGGTTGTTATTGCTCGGTAAGGGAGTT
GTTGTTTTGCGTTGCCAGAAGTCTACACCTCCCCACGAGGCTTATTTCCG
GCGCAGTCAAGCACACGATCAACCGCACCAAACTTCCACTGATCCTTGCA
GGACCTTGTGCGGTAAAGCTTCTTGGTGTGGATTGGCTGCGTCTGTGGTG
GAGAAATTTAGTGTCAACTTAATTATCCAGGATTCAGAAGGAACTTCTTG
AAGAAGCGCTCGCTCGAAGTGATTTTCATTTCTTTATCATTCATGCACTT
CGACACACCCACACCCACTTTCTCGCACCACCGCAGCCACCCACACAAGC
AGCATGTCCATGGAAGAGCACACTCTGTCGGATTCTGGCAACAGCACCGG
CAGCTTGCACGATGTTACGGACAACGATGGTAAGTTGACGACAACCCGCT
TGGCCATGTTCCGTTTAGTTGCCCCTGTCTGTGCCCTTAAACAGCAAGCA
CTCAACCTCTCACGCACCATAACCCTCGTTCTTTCAAATGACATACAGCC
TCTAATGCAAACGCGGCCATGGCAGCGGCGGCTGCCGAGGAGGAGGAGGG
CACAGTGAGTCAAGGGCGGAAATGTCGAGGGTGACTGGTAGTGCAAATGC
CTCGCATGTGTTCATGCTGGTGCAAAGATGTTTGACAGACATAGGCATTT
GGTGATGTAGTATGATATCATGCTACATGCTGCATCCACGGCGCCGAATT
CACAGCATGGAGGACGCATCGTACCATGCTAATTGTTGTAAGATGTGCGA
AAGGCCACTCAGTGATCATTTGTGTCAGACAGATTCAGTTAGAGTCGAGA
AGGCTGTCCGATGACCTCGATTGGAAACAACGAGAATGAGGAAAGCATGG
AATGGCAGTGCCGAATAAGCACCAGTGGCAGCTTAAGAAGGGGAAAGCAC
ACGCCTCTTTTTAGCGACACGAAAGTGCTTTGGAAGACAGAACTGCAAGC
TTCGAAGGACGGAGCTGTAGCCGATTTTTCGGTCCCCTCCCCCCCTTTTA
CATTACCCTCCTTTCTCCCCCGTGGTAATACCCCGCGAGAAAGGCCACGG
TCTCTCCGACAACCTTCCGTCCTAACCCACCTCTCCCCCTTTCTTTGCAT
CCCTCCAGCAGCACAACAGCAGCCAAAACGTCATTCCCACCGACAGTCTG
GCCAACGGGCTAAGCGTCGCCAAGGGGCTGTTTACCTCCGGGTGGTCGCA
AGCGAAAAAAGGCCTGACGCAGATGCAGGAATCGGAGACGATGGCGAAAG
TCCGTGAGGCCTCCAAGCCGCTGGTGGGTGCAGTCGTGGAGGGTGGAAAG
GTGGTCGGGGAGAAGCTGCACCAGTCGGCAGAAGCGGCCAAACCTGGACT
GGAAGCAGTTGGGAGGTACGTACATTTTTTGTCTATCGTTGTGTCTTGTC
GAACACTCAAGATAGATTCGAATCTCACTCTGTCTTCCTTCCTTTTCGCC
CGCTATCCCTCCCTTCCTGCCTCCATCCCTTCCAGGCGCGTATCGGGCGC
GGTGGAGAGTTTAGCCGAGAAGACTAAGCCGGCATTGGAGAAGGCTGGAG
ATGCGATCAAGACAACGACGAAGCATGTGGTGGATGAGGGCAAGCCGATT
GTGAAGAAGGTGAGTCTAGAGAGAGCGAGGGAGGGAGGACAAGGCCGGGC
TATCTGGGTCGTGGCTAACAATACACCTCCCTTTATACATGTACAGGTGG
GAACATTCATCAATCACAACATGGGCGGCAAGAGCGAGGGCGGTGGTCGT
GGCGATCCGCCCACGACGGTCTAAGCGCAGCAGCAGTGCAGGTCTAAGGC
GGCAGGCTTGTAGAGTGGAGGAAAAGAACAGAGGGAAACAGAGATGATTG
ACGTCACAGAAGGGGAGAAATTTACGTGTCTATCCATAGGATGTGTTATT
TGAGATCAAGTTTTTTTGGTGTGGGAATGTAGGGAAGGTATGGGAGGGGA
GAGAGAGAGGGATTGTCGACGTGGAGACCGCGTCAAATAAAAGCGGGGGC
GAAATCAAAACACACCGTCTTTATTCATATGGAGTGGAAAGGAACATACA
CAGGAAGCGTCTCGTGT

Coding sequence (CDS) from alignment at chr7:806547..810913+

>NO07G02860.1 ID=NO07G02860.1|Name=NO07G02860.1|organism=Nannochloropsis oceanica|type=CDS|length=591bp|location=Sequence derived from alignment at chr7:806547..810913+ (Nannochloropsis oceanica)
ATGTCCATGGAAGAGCACACTCTGTCGGATTCTGGCAACAGCACCGGCAG
CTTGCACGATGTTACGGACAACGATGCCTCTAATGCAAACGCGGCCATGG
CAGCGGCGGCTGCCGAGGAGGAGGAGGGCACACAGCACAACAGCAGCCAA
AACGTCATTCCCACCGACAGTCTGGCCAACGGGCTAAGCGTCGCCAAGGG
GCTGTTTACCTCCGGGTGGTCGCAAGCGAAAAAAGGCCTGACGCAGATGC
AGGAATCGGAGACGATGGCGAAAGTCCGTGAGGCCTCCAAGCCGCTGGTG
GGTGCAGTCGTGGAGGGTGGAAAGGTGGTCGGGGAGAAGCTGCACCAGTC
GGCAGAAGCGGCCAAACCTGGACTGGAAGCAGTTGGGAGGCGCGTATCGG
GCGCGGTGGAGAGTTTAGCCGAGAAGACTAAGCCGGCATTGGAGAAGGCT
GGAGATGCGATCAAGACAACGACGAAGCATGTGGTGGATGAGGGCAAGCC
GATTGTGAAGAAGGTGGGAACATTCATCAATCACAACATGGGCGGCAAGA
GCGAGGGCGGTGGTCGTGGCGATCCGCCCACGACGGTCTAA

Synonyms

Publications