NO07G02760.1, NO07G02760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02760.1
Unique NameNO07G02760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1501
Alignment locationchr7:791566..793066 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:791566..793066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G02760.1 vs.
Match: AGS78408.1 (malonyl-CoA:Acyl carrier protein transacylase [Nannochloropsis gaditana]; EWM27095.1 malonyl- :acp transacylase [Nannochloropsis gaditana])

HSP 1 Score: 600.1 bits (1546), Expect = 4.400e-168
Identity = 316/352 (89.77%), Postives = 332/352 (94.32%), Query Frame = 0 
Query:    1 MMSKSLMLLSLLSPVAFAFVSRAPASTLSRAASTHARKNLVKASAVDYTTAFMFPGQGAQYVGMGAQVAEEVPAAKALFEKASVILGYDLLERSVNGPKDLLDSTAVSQPAIFVTSAAAVEKLRATEGEAAVNTATVAMGLSLGEYTALWYAGAFSFEDGVRLTKARGEAMQAAADLVDTTMVSVIGLDPDKVAELCSAASKKSGEKIQIANYLCPGNYAVSGSLKAAQVLEEIAKPDFGARMTVRLAVAGAFHTEYMAPAVEKLKEVLAKTEFKTPRIPVISNVDGKAHSDPEEIKAILARQVTSPVQWETTMNDLVKGGLETGYELGPGKVCAGIMKRIDRSAKMVNIEA 353
            MMSKSL++L LLSP AFAFV +   + LSRA S+HARKNLVKASAVDY TAFMFPGQGAQYVGMGAQV+EEVPAAKALFEKAS ILGYDLL+R++NGPKDLLDSTAVSQPAIFV SAAAVEKLRATEGE A N ATVAMGLSLGEY+AL YAGAFSFEDGVRLTKARGEAMQAAADLVDTTMVSVIGL+ DKV ELC+AAS KSGEKIQIANYLCPGNYAVSGSLKAAQVLEEIAKP+FGARMTVRLAVAGAFHTEYMAPA+EKLKEVLAKTEFKTPRIPVISNVDGK HSDPEEIKAILA+QVTSPVQWETTMNDLVKGGLETGYELGPGKVCAGI+KRIDR AKMVNIEA
Sbjct:    1 MMSKSLIMLGLLSPTAFAFVPKLSTNVLSRAISSHARKNLVKASAVDYKTAFMFPGQGAQYVGMGAQVSEEVPAAKALFEKASEILGYDLLDRAMNGPKDLLDSTAVSQPAIFVASAAAVEKLRATEGEDAANAATVAMGLSLGEYSALCYAGAFSFEDGVRLTKARGEAMQAAADLVDTTMVSVIGLEADKVNELCAAASSKSGEKIQIANYLCPGNYAVSGSLKAAQVLEEIAKPEFGARMTVRLAVAGAFHTEYMAPALEKLKEVLAKTEFKTPRIPVISNVDGKPHSDPEEIKAILAKQVTSPVQWETTMNDLVKGGLETGYELGPGKVCAGILKRIDRKAKMVNIEA 352
The following BLAST results are available for this feature:
BLAST of NO07G02760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
AGS78408.14.400e-16889.77malonyl-CoA:Acyl carrier protein transacylase [Nan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02760NO07G02760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02760.1NO07G02760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02760.1.cds1NO07G02760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02760.1 ID=NO07G02760.1|Name=NO07G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp
TCGGAACCCGCTGACAGCCAAGATCGCGCTCGCCTTCGTCGCCACGCTAC
GTAACCACACTGGTACTTCTGCAAATGGTTTTCGGTTGCATAAGCAGTCA
TGGTCGTCGAGCAGTCCATGTGGTGCGGACGTTTTCCATGGCAGCCAATC
AAGCGCAAAGTCATCAATCTCTTCCTATCCTCACCCTTCCACACTCCACA
CCACCCGCTACACACAGAGAATGATGTCCAAGAGCCTCATGCTGCTTAGC
CTGCTGAGCCCCGTGGCGTTTGCTTTCGTCTCTCGCGCACCGGCCAGTAC
CCTCTCCCGCGCCGCTTCTACGCACGCCCGCAAGAACCTGGTCAAGGCCT
CTGCTGTGGACTACACGACTGCCTTCATGTTCCCCGGGCAAGGCGCGCAA
TACGTGGGCATGGGTGCTCAGGTTGCCGAGGAGGTACCCGCTGCTAAGGC
TTTGTTTGAGAAAGCTAGCGTGATTCTGGGGTACGATTTGCTTGAGCGGT
CGGTAAACGGGCCTAAGGACCTGTTGGACTCGACGGCGGTGAGCCAGCCT
GCCATTTTTGTGACGTCCGCGGCGGCGGTGGAGAAACTCCGCGCAACCGA
AGGCGAAGCGGCCGTCAATACCGCTACGGTGGCCATGGGGTTATCTTTGG
GGGAATACACAGCTTTGTGGTACGCGGGTGCATTTTCGTTCGAGGACGGG
GTGCGATTGACCAAAGCGCGCGGAGAGGCCATGCAAGCGGCGGCCGATCT
GGTTGACACAACCATGGTGAGCGTCATTGGCTTGGATCCGGATAAAGTGG
CCGAACTCTGTTCGGCAGCGTCAAAGAAGTCGGGTGAAAAAATTCAAATA
GCCAACTACTTGTGCCCGGGAAATTATGCCGTATCTGGTAGCTTGAAAGC
GGCCCAGGTCTTGGAGGAGATCGCCAAGCCTGACTTTGGGGCGAGAATGA
CTGTCCGTCTCGCTGTGGCCGGAGCGTTCCATACTGAATATATGGCACCA
GCAGTGGAGAAGCTGAAAGAGGTATTGGCCAAGACTGAGTTCAAGACGCC
GAGGATTCCTGTGATTTCGAATGTGGATGGGAAAGCGCATTCGGACCCAG
AAGAGATCAAGGCGATTCTGGCGAGGCAAGTCACCTCGCCCGTGCAGTGG
GAGACGACGATGAATGATTTGGTTAAGGGTGGGTTGGAGACGGGGTATGA
GTTGGGGCCCGGGAAGGTGTGTGCCGGAATTATGAAGAGGATTGATAGGA
GTGCAAAGATGGTAAACATTGAAGCGTAAGTTAGGGAGGGAGGCGAAGAA
GGGAGGGAGAGAGGGAGAGGGAGGGAGGATGGATAGGTGTTGTATGTGCT
ACTATTTGTCATCGATGTTATGCGCGTGTGTGAATTTCTGACTCATTATG
GTGTGTGGTGGTAGTAGTTCGTATGGTCTCGCTCCGCGCGCTGCGTTTCG
GTAAAGGGAGGGCACACCAAAGCAAGAGGAAAAATACAACCAAACAGCAG
A
back to top

protein sequence of NO07G02760.1

>NO07G02760.1-protein ID=NO07G02760.1-protein|Name=NO07G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MMSKSLMLLSLLSPVAFAFVSRAPASTLSRAASTHARKNLVKASAVDYTT
AFMFPGQGAQYVGMGAQVAEEVPAAKALFEKASVILGYDLLERSVNGPKD
LLDSTAVSQPAIFVTSAAAVEKLRATEGEAAVNTATVAMGLSLGEYTALW
YAGAFSFEDGVRLTKARGEAMQAAADLVDTTMVSVIGLDPDKVAELCSAA
SKKSGEKIQIANYLCPGNYAVSGSLKAAQVLEEIAKPDFGARMTVRLAVA
GAFHTEYMAPAVEKLKEVLAKTEFKTPRIPVISNVDGKAHSDPEEIKAIL
ARQVTSPVQWETTMNDLVKGGLETGYELGPGKVCAGIMKRIDRSAKMVNI
EA*
back to top

mRNA from alignment at chr7:791566..793066+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02760.1 ID=NO07G02760.1|Name=NO07G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp|location=Sequence derived from alignment at chr7:791566..793066+ (Nannochloropsis oceanica)
TCGGAACCCGCTGACAGCCAAGATCGCGCTCGCCTTCGTCGCCACGCTAC
GTAACCACACTGGTACTTCTGCAAATGGTTTTCGGTTGCATAAGCAGTCA
TGGTCGTCGAGCAGTCCATGTGGTGCGGACGTTTTCCATGGCAGCCAATC
AAGCGCAAAGTCATCAATCTCTTCCTATCCTCACCCTTCCACACTCCACA
CCACCCGCTACACACAGAGAATGATGTCCAAGAGCCTCATGCTGCTTAGC
CTGCTGAGCCCCGTGGCGTTTGCTTTCGTCTCTCGCGCACCGGCCAGTAC
CCTCTCCCGCGCCGCTTCTACGCACGCCCGCAAGAACCTGGTCAAGGCCT
CTGCTGTGGACTACACGACTGCCTTCATGTTCCCCGGGCAAGGCGCGCAA
TACGTGGGCATGGGTGCTCAGGTTGCCGAGGAGGTACCCGCTGCTAAGGC
TTTGTTTGAGAAAGCTAGCGTGATTCTGGGGTACGATTTGCTTGAGCGGT
CGGTAAACGGGCCTAAGGACCTGTTGGACTCGACGGCGGTGAGCCAGCCT
GCCATTTTTGTGACGTCCGCGGCGGCGGTGGAGAAACTCCGCGCAACCGA
AGGCGAAGCGGCCGTCAATACCGCTACGGTGGCCATGGGGTTATCTTTGG
GGGAATACACAGCTTTGTGGTACGCGGGTGCATTTTCGTTCGAGGACGGG
GTGCGATTGACCAAAGCGCGCGGAGAGGCCATGCAAGCGGCGGCCGATCT
GGTTGACACAACCATGGTGAGCGTCATTGGCTTGGATCCGGATAAAGTGG
CCGAACTCTGTTCGGCAGCGTCAAAGAAGTCGGGTGAAAAAATTCAAATA
GCCAACTACTTGTGCCCGGGAAATTATGCCGTATCTGGTAGCTTGAAAGC
GGCCCAGGTCTTGGAGGAGATCGCCAAGCCTGACTTTGGGGCGAGAATGA
CTGTCCGTCTCGCTGTGGCCGGAGCGTTCCATACTGAATATATGGCACCA
GCAGTGGAGAAGCTGAAAGAGGTATTGGCCAAGACTGAGTTCAAGACGCC
GAGGATTCCTGTGATTTCGAATGTGGATGGGAAAGCGCATTCGGACCCAG
AAGAGATCAAGGCGATTCTGGCGAGGCAAGTCACCTCGCCCGTGCAGTGG
GAGACGACGATGAATGATTTGGTTAAGGGTGGGTTGGAGACGGGGTATGA
GTTGGGGCCCGGGAAGGTGTGTGCCGGAATTATGAAGAGGATTGATAGGA
GTGCAAAGATGGTAAACATTGAAGCGTAAGTTAGGGAGGGAGGCGAAGAA
GGGAGGGAGAGAGGGAGAGGGAGGGAGGATGGATAGGTGTTGTATGTGCT
ACTATTTGTCATCGATGTTATGCGCGTGTGTGAATTTCTGACTCATTATG
GTGTGTGGTGGTAGTAGTTCGTATGGTCTCGCTCCGCGCGCTGCGTTTCG
GTAAAGGGAGGGCACACCAAAGCAAGAGGAAAAATACAACCAAACAGCAG
A
back to top

Coding sequence (CDS) from alignment at chr7:791566..793066+

>NO07G02760.1 ID=NO07G02760.1|Name=NO07G02760.1|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr7:791566..793066+ (Nannochloropsis oceanica)
ATGATGTCCAAGAGCCTCATGCTGCTTAGCCTGCTGAGCCCCGTGGCGTT
TGCTTTCGTCTCTCGCGCACCGGCCAGTACCCTCTCCCGCGCCGCTTCTA
CGCACGCCCGCAAGAACCTGGTCAAGGCCTCTGCTGTGGACTACACGACT
GCCTTCATGTTCCCCGGGCAAGGCGCGCAATACGTGGGCATGGGTGCTCA
GGTTGCCGAGGAGGTACCCGCTGCTAAGGCTTTGTTTGAGAAAGCTAGCG
TGATTCTGGGGTACGATTTGCTTGAGCGGTCGGTAAACGGGCCTAAGGAC
CTGTTGGACTCGACGGCGGTGAGCCAGCCTGCCATTTTTGTGACGTCCGC
GGCGGCGGTGGAGAAACTCCGCGCAACCGAAGGCGAAGCGGCCGTCAATA
CCGCTACGGTGGCCATGGGGTTATCTTTGGGGGAATACACAGCTTTGTGG
TACGCGGGTGCATTTTCGTTCGAGGACGGGGTGCGATTGACCAAAGCGCG
CGGAGAGGCCATGCAAGCGGCGGCCGATCTGGTTGACACAACCATGGTGA
GCGTCATTGGCTTGGATCCGGATAAAGTGGCCGAACTCTGTTCGGCAGCG
TCAAAGAAGTCGGGTGAAAAAATTCAAATAGCCAACTACTTGTGCCCGGG
AAATTATGCCGTATCTGGTAGCTTGAAAGCGGCCCAGGTCTTGGAGGAGA
TCGCCAAGCCTGACTTTGGGGCGAGAATGACTGTCCGTCTCGCTGTGGCC
GGAGCGTTCCATACTGAATATATGGCACCAGCAGTGGAGAAGCTGAAAGA
GGTATTGGCCAAGACTGAGTTCAAGACGCCGAGGATTCCTGTGATTTCGA
ATGTGGATGGGAAAGCGCATTCGGACCCAGAAGAGATCAAGGCGATTCTG
GCGAGGCAAGTCACCTCGCCCGTGCAGTGGGAGACGACGATGAATGATTT
GGTTAAGGGTGGGTTGGAGACGGGGTATGAGTTGGGGCCCGGGAAGGTGT
GTGCCGGAATTATGAAGAGGATTGATAGGAGTGCAAAGATGGTAAACATT
GAAGCGTAA
back to top
Synonyms
Publications