NO07G02740.1, NO07G02740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02740.1
Unique NameNO07G02740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr7:786188..787673 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:786188..787673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02740.1 vs.
Match: EWM27117.1 (nitrite transporter nar1 [Nannochloropsis gaditana])

HSP 1 Score: 382.1 bits (980), Expect = 1.600e-102
Identity = 199/273 (72.89%), Postives = 232/273 (84.98%), Query Frame = 0 
Query:    7 RTSTSSPLFSGDSSHATILPILRDPEESYISAVELGVHKASYPSAIIFLLGIQAGLQVGLGAAMAASTLAGVPGIKASDPGLAKLIYGFCGLPCGLLLTATTGTQLFTGNTAIVSVALMERKIKFRQLVKTWIWSYLGNMVGAALLASLCTYAGVFKSAAASIVSVAVYKAGLPFGVLVARGALCNYLVCMAVWVSQAAADLVSKAAAIILIITIFASLGFEHSVANMLIGPFSALNGGPSYLHFFLRNIVPVSIGNIFAGVVLVALSNYLSF 280
            R+++S+PL   D       P L+DP  +Y SAV+ G  KA+ P+ IIFLLGIQAGLQVG+GAAMA +T+AGVPGI+A DPGLAKLIYGFCGLPCGLL+TAT GT LFTGNTA+VSVALME+KIK +QLVKTW+WSYLGNMVGA  LA+LCTYAGVF S+AA+I SVA  K  +PFGV VARG LCN+LV  AVW++QAAADLVSKA AI+LIITIFASLGFEHSVANM +GPF ALNGGPS+LHFFLRN++PV+IGNI AGVV+VA +NYLSF
Sbjct:   50 RSASSTPLLPFDGFQ----PPLKDPVAAYDSAVKQGEKKANEPAPIIFLLGIQAGLQVGIGAAMAVATMAGVPGIQAKDPGLAKLIYGFCGLPCGLLMTATMGTMLFTGNTAVVSVALMEKKIKLQQLVKTWVWSYLGNMVGAGFLAALCTYAGVFSSSAAAIASVAASKTAMPFGVAVARGILCNWLVTTAVWIAQAAADLVSKATAIVLIITIFASLGFEHSVANMFVGPFGALNGGPSFLHFFLRNLIPVTIGNIIAGVVMVAFANYLSF 318
The following BLAST results are available for this feature:
BLAST of NO07G02740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27117.11.600e-10272.89nitrite transporter nar1 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02740NO07G02740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02740.1NO07G02740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02740.1.cds1NO07G02740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02740.1.cds2NO07G02740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02740.1.cds3NO07G02740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02740.1.cds4NO07G02740.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02740.1.cds5NO07G02740.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02740.1 ID=NO07G02740.1|Name=NO07G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
ATGCCCCCTTCTTTTCGCCGTACTTCGACCTCCTCCCCCCTCTTTTCCGG
CGACAGCAGCCATGCTACTATTCTCCCAATTCTCCGAGACCCCGAAGAGT
CATACATCAGCGCAGTAGAGCTAGGTGTACATAAGGCCTCATATCCATCA
GCCATAATTTTCCTGCTCGGCATCCAAGCGGGGTTGCAAGTGGGTCTGGG
AGCAGCAATGGCAGCGTCGACGCTGGCGGGAGTTCCTGGTATAAAGGCGA
GCGACCCAGGTTTGGCCAAGCTGATTTACGGCTTTTGTGGTCTTCCTTGC
GGGCTGCTGTTGACAGCAACGACGGGCACGCAATTGTTTACTGGCAATAC
CGCGATTGTCTCTGTGGCCTTGATGGAGAGAAAGATCAAATTTCGCCAGC
TAGTTAAGACCTGGATATGGTCCTACTTGGGTAATATGGTCGGTGCTGCA
TTGCTGGCGAGCTTGTGCACGTATGCCGGTGTCTTCAAGAGTGCTGCGGC
CTCCATAGTGTCCGTGGCGGTCTATAAAGCCGGCCTGCCGTTTGGGGTGC
TTGTGGCGCGTGGGGCCCTGTGCAATTACCTAGTCTGCATGGCCGTCTGG
GTCAGCCAAGCTGCTGCTGATCTAGTCAGTAAAGCGGCGGCCATCATCCT
TATCATCACCATCTTCGCCTCGTTGGGATTCGAACACTCAGTCGCCAACA
TGCTAATCGGCCCATTTTCCGCCCTCAACGGCGGCCCTTCTTACCTTCAT
TTCTTTCTACGTAACATCGTGCCTGTTTCTATAGGAAATATTTTTGCGGG
TGTTGTTCTGGTGGCGCTTTCAAATTATTTGTCTTTTGGTTCGGGTAGCA
AACTGTGGATGAAGAGGAAAGGGCACGGCAAGGGATTCAACCCGGCGGCG
ACATCCTCGCGATAG
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protein sequence of NO07G02740.1

>NO07G02740.1-protein ID=NO07G02740.1-protein|Name=NO07G02740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MPPSFRRTSTSSPLFSGDSSHATILPILRDPEESYISAVELGVHKASYPS
AIIFLLGIQAGLQVGLGAAMAASTLAGVPGIKASDPGLAKLIYGFCGLPC
GLLLTATTGTQLFTGNTAIVSVALMERKIKFRQLVKTWIWSYLGNMVGAA
LLASLCTYAGVFKSAAASIVSVAVYKAGLPFGVLVARGALCNYLVCMAVW
VSQAAADLVSKAAAIILIITIFASLGFEHSVANMLIGPFSALNGGPSYLH
FFLRNIVPVSIGNIFAGVVLVALSNYLSFGSGSKLWMKRKGHGKGFNPAA
TSSR*
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mRNA from alignment at chr7:786188..787673+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02740.1 ID=NO07G02740.1|Name=NO07G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1486bp|location=Sequence derived from alignment at chr7:786188..787673+ (Nannochloropsis oceanica)
ATGCCCCCTTCTTTTCGCCGTACTTCGACCTCCTCCCCCCTCTTTTCCGG
CGACAGCAGCCATGCTACTATTCTCCCAATTCTCCGAGACCCCGAAGAGT
CATACATCAGCGCAGTAGAGCTAGGTGTACATAAGGCCTCATATCCATCA
GCCATAATTTTCCTGCTCGGCATCCAAGCGGGGTTGCAAGTGGGTCTGGG
AGCAGCAATGGCAGCGTCGACGCTGGCGGGAGTTCCTGGTATAAAGGCGA
GCGACCCAGGTTTGGCCAAGCTGATTTACGGCTTTTGTGGTCTTCCTTGC
GGGCTGCTGTTGACAGCAACGACGGTATGTGTGGGGGAAGAGAAGGTTGG
GTGGATGTGTGGGGATGCAGAGCGAAGGAAGGGGGAGGATGTCGGGACGC
AGACTTTTGCTTTGCTCTTTCTCATGTATTTCTATTCATCTATATGAACA
GGGCACGCAATTGTTTACTGGCAATACCGCGATTGTCTCTGTGGCCTTGA
TGGAGAGAAAGGTGGGCAATTAGTGGGATTCAAAAGAGGGGAGTACGTTT
TTCCCCCGTCACCAAACTAATTAAAACAAAATACAAATAAATTACTCACG
AATATATATGATAGATCAAATTTCGCCAGCTAGTTAAGACCTGGATATGG
TCCTACTTGGGTAATATGGTCGGTGCTGCATTGCTGGCGAGCTTGTGCAC
GTATGCCGGTGTCTTCAAGAGTGCTGCGGCCTCCATAGTGTCCGTGGCGG
TCTATAAAGCCGGCCTGCCGTTTGGGGTGGTGCGTCGGAAGAGAGGGAGA
GAGGGAACAAGAGGGAGGATGACTGCAGATGCGTTTATCATTGTGAAAAG
CGCTGGCGCTAGGCATCATGGTTTCTGACTGTTTGCTCCTCTTCTCCCCT
CCCTCCCCTACCTTCCTTTCCTCACCTCCAGCTTGTGGCGCGTGGGGCCC
TGTGCAATTACCTAGTCTGCATGGCCGTCTGGGTCAGCCAAGCTGCTGCT
GATCTAGTCAGTAAAGCGGCGGCCATCATCCTTATCATCACCATCTTCGC
CTCGTTGGGATTCGAACACTCAGTCGCCAACATGCTAATCGGTAAGGAGG
GAGGCAGAGAGGGAGGGAGAAAGTTTCTTGCAATGAATGGCCGGTGTTCA
ATTGGAGAGGCCTTGAGGATGCTGTTTAAGGTTCCTCGGATGGTGAAGTT
CCGGATAAATATTTTCGAATCCTCACCTCCGCTCCCTCCCTTTCTCCCTT
CCTCCTTCCCTCCGTACATCAATTTAATAGGCCCATTTTCCGCCCTCAAC
GGCGGCCCTTCTTACCTTCATTTCTTTCTACGTAACATCGTGCCTGTTTC
TATAGGAAATATTTTTGCGGGTGTTGTTCTGGTGGCGCTTTCAAATTATT
TGTCTTTTGGTTCGGGTAGCAAACTGTGGATGAAGAGGAAAGGGCACGGC
AAGGGATTCAACCCGGCGGCGACATCCTCGCGATAG
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Coding sequence (CDS) from alignment at chr7:786188..787673+

>NO07G02740.1 ID=NO07G02740.1|Name=NO07G02740.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr7:786188..787673+ (Nannochloropsis oceanica)
ATGCCCCCTTCTTTTCGCCGTACTTCGACCTCCTCCCCCCTCTTTTCCGG
CGACAGCAGCCATGCTACTATTCTCCCAATTCTCCGAGACCCCGAAGAGT
CATACATCAGCGCAGTAGAGCTAGGTGTACATAAGGCCTCATATCCATCA
GCCATAATTTTCCTGCTCGGCATCCAAGCGGGGTTGCAAGTGGGTCTGGG
AGCAGCAATGGCAGCGTCGACGCTGGCGGGAGTTCCTGGTATAAAGGCGA
GCGACCCAGGTTTGGCCAAGCTGATTTACGGCTTTTGTGGTCTTCCTTGC
GGGCTGCTGTTGACAGCAACGACGGGCACGCAATTGTTTACTGGCAATAC
CGCGATTGTCTCTGTGGCCTTGATGGAGAGAAAGATCAAATTTCGCCAGC
TAGTTAAGACCTGGATATGGTCCTACTTGGGTAATATGGTCGGTGCTGCA
TTGCTGGCGAGCTTGTGCACGTATGCCGGTGTCTTCAAGAGTGCTGCGGC
CTCCATAGTGTCCGTGGCGGTCTATAAAGCCGGCCTGCCGTTTGGGGTGC
TTGTGGCGCGTGGGGCCCTGTGCAATTACCTAGTCTGCATGGCCGTCTGG
GTCAGCCAAGCTGCTGCTGATCTAGTCAGTAAAGCGGCGGCCATCATCCT
TATCATCACCATCTTCGCCTCGTTGGGATTCGAACACTCAGTCGCCAACA
TGCTAATCGGCCCATTTTCCGCCCTCAACGGCGGCCCTTCTTACCTTCAT
TTCTTTCTACGTAACATCGTGCCTGTTTCTATAGGAAATATTTTTGCGGG
TGTTGTTCTGGTGGCGCTTTCAAATTATTTGTCTTTTGGTTCGGGTAGCA
AACTGTGGATGAAGAGGAAAGGGCACGGCAAGGGATTCAACCCGGCGGCG
ACATCCTCGCGATAG
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Synonyms
Publications