NO07G02720.1, NO07G02720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02720.1
Unique NameNO07G02720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1056
Alignment locationchr7:781917..782972 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:781917..782972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02720.1 vs.
Match: XP_005855368.1 (dtw domain containing protein, partial [Nannochloropsis gaditana CCMP526]; EKU20994.1 dtw domain containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 387.9 bits (995), Expect = 3.400e-104
Identity = 189/299 (63.21%), Postives = 236/299 (78.93%), Query Frame = 0 
Query:   52 STSPPNASALLQAYLAAPLPYLVDDWVKSPCPTDGCTAEKRFYCANCVCWIGVPSHVDAPRLRLPVNVDIVLADNRKKSTAIQVGVVASSSIRVWDSWTGGLEALERENWDVEKTLVLFPSKDAITLDELPVADLASIERVVVLDSRWNNTTKVLEHPGITRLTKRVKLKDPPKESLCWRYHSKGEGLLSSAEALYFLLKDYVGLTGKGAKRLNDKADGSGREEEREDKEETAPLEEMMYLFRLNVNVIKGSYERGARRKLPLPMEAAGKQRCREVRCQLKGVAYSKKYRRG--EREGG 349
            +T   + SA LQAYLAAPLPY +DDWVK+ CP+ GCTAEKRFYCA CVCW+GVP+ V  PRLRLP+ V+I++ADNRKKSTAIQVGVVA+ S+RVWD+WTGGLE L  E W+V++TLVLFPS+DA+TL+ +   +L  I+RVVVLDSRWNNTT VL+HPG+ RLTKRVKLK+PP+ESLCWRYHSKGEGLLSSAEALY+  KDY  LT +  K ++   + SG+ E+ E       LEE+M++FRLN+NVIK SY +GAR+ LPLPMEAAGK R +  R + +  A +KK +R   ++EGG
Sbjct:   29 ATDHIDTSASLQAYLAAPLPYAIDDWVKAACPSHGCTAEKRFYCAKCVCWVGVPAGVQVPRLRLPLEVNIIIADNRKKSTAIQVGVVATESVRVWDTWTGGLEELAAEPWEVDETLVLFPSQDAVTLNAMSFEELTVIKRVVVLDSRWNNTTTVLDHPGVRRLTKRVKLKNPPQESLCWRYHSKGEGLLSSAEALYYFFKDYEWLTHRRVKAVHSVTESSGQNEDGE-----VMLEEIMHIFRLNINVIKESYNKGARKNLPLPMEAAGKARIKAHRSKQRLEAVAKKSKREILQKEGG 322
The following BLAST results are available for this feature:
BLAST of NO07G02720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855368.13.400e-10463.21dtw domain containing protein, partial [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02720NO07G02720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02720.1NO07G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02720.1.cds1NO07G02720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02720.1 ID=NO07G02720.1|Name=NO07G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
ATGATCCAGCTGACCCCTTTGCATACACCTGTTTTTAAAGACTTACGCCT
GCGACGTAACAATCACAAACAACATAGTTGCAAGGATTACAGCCGGGTGC
TCGTGATCCAGGCATTGTGGGCCTCAGGCGTTGCGGTCTGCAACATGGAA
TCGTCAACCTCCCCACCCAATGCGAGCGCCTTGCTCCAAGCCTACCTGGC
CGCGCCTCTACCTTACCTGGTGGACGACTGGGTCAAATCACCTTGTCCCA
CCGATGGATGTACGGCGGAAAAACGTTTTTACTGTGCGAATTGCGTCTGC
TGGATAGGGGTGCCTTCGCATGTGGACGCTCCTCGCCTACGCCTACCCGT
GAATGTGGACATTGTGCTGGCCGATAACCGCAAAAAATCCACTGCTATTC
AAGTAGGTGTGGTTGCTTCCTCTTCTATCCGTGTATGGGATTCGTGGACC
GGGGGTTTGGAGGCACTGGAAAGGGAAAATTGGGATGTGGAGAAGACTCT
CGTTCTCTTTCCCTCCAAAGACGCAATCACACTTGATGAGCTTCCCGTTG
CAGATCTCGCATCAATTGAACGTGTGGTTGTTTTGGATTCACGATGGAAT
AATACAACCAAGGTGTTAGAGCACCCAGGGATCACGAGGTTGACCAAAAG
GGTGAAGCTAAAGGACCCTCCGAAAGAATCATTGTGTTGGCGCTATCACT
CAAAGGGAGAGGGTTTGTTGTCCTCCGCCGAAGCCTTGTATTTTCTACTC
AAGGATTATGTCGGCTTGACGGGAAAAGGTGCAAAACGATTGAATGACAA
AGCAGATGGGAGCGGGCGAGAGGAAGAGAGGGAGGATAAGGAGGAAACTG
CACCGTTGGAGGAAATGATGTATCTCTTCCGTCTCAATGTCAACGTCATC
AAGGGTTCGTACGAGAGAGGCGCGAGGAGGAAGCTGCCGTTGCCCATGGA
GGCAGCTGGCAAACAGCGCTGTCGGGAAGTGCGTTGTCAATTGAAGGGGG
TTGCCTACTCGAAGAAATATAGACGGGGAGAGAGAGAAGGAGGAGGAACG
GGGTGA
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protein sequence of NO07G02720.1

>NO07G02720.1-protein ID=NO07G02720.1-protein|Name=NO07G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MIQLTPLHTPVFKDLRLRRNNHKQHSCKDYSRVLVIQALWASGVAVCNME
SSTSPPNASALLQAYLAAPLPYLVDDWVKSPCPTDGCTAEKRFYCANCVC
WIGVPSHVDAPRLRLPVNVDIVLADNRKKSTAIQVGVVASSSIRVWDSWT
GGLEALERENWDVEKTLVLFPSKDAITLDELPVADLASIERVVVLDSRWN
NTTKVLEHPGITRLTKRVKLKDPPKESLCWRYHSKGEGLLSSAEALYFLL
KDYVGLTGKGAKRLNDKADGSGREEEREDKEETAPLEEMMYLFRLNVNVI
KGSYERGARRKLPLPMEAAGKQRCREVRCQLKGVAYSKKYRRGEREGGGT
G*
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mRNA from alignment at chr7:781917..782972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02720.1 ID=NO07G02720.1|Name=NO07G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp|location=Sequence derived from alignment at chr7:781917..782972- (Nannochloropsis oceanica)
ATGATCCAGCTGACCCCTTTGCATACACCTGTTTTTAAAGACTTACGCCT
GCGACGTAACAATCACAAACAACATAGTTGCAAGGATTACAGCCGGGTGC
TCGTGATCCAGGCATTGTGGGCCTCAGGCGTTGCGGTCTGCAACATGGAA
TCGTCAACCTCCCCACCCAATGCGAGCGCCTTGCTCCAAGCCTACCTGGC
CGCGCCTCTACCTTACCTGGTGGACGACTGGGTCAAATCACCTTGTCCCA
CCGATGGATGTACGGCGGAAAAACGTTTTTACTGTGCGAATTGCGTCTGC
TGGATAGGGGTGCCTTCGCATGTGGACGCTCCTCGCCTACGCCTACCCGT
GAATGTGGACATTGTGCTGGCCGATAACCGCAAAAAATCCACTGCTATTC
AAGTAGGTGTGGTTGCTTCCTCTTCTATCCGTGTATGGGATTCGTGGACC
GGGGGTTTGGAGGCACTGGAAAGGGAAAATTGGGATGTGGAGAAGACTCT
CGTTCTCTTTCCCTCCAAAGACGCAATCACACTTGATGAGCTTCCCGTTG
CAGATCTCGCATCAATTGAACGTGTGGTTGTTTTGGATTCACGATGGAAT
AATACAACCAAGGTGTTAGAGCACCCAGGGATCACGAGGTTGACCAAAAG
GGTGAAGCTAAAGGACCCTCCGAAAGAATCATTGTGTTGGCGCTATCACT
CAAAGGGAGAGGGTTTGTTGTCCTCCGCCGAAGCCTTGTATTTTCTACTC
AAGGATTATGTCGGCTTGACGGGAAAAGGTGCAAAACGATTGAATGACAA
AGCAGATGGGAGCGGGCGAGAGGAAGAGAGGGAGGATAAGGAGGAAACTG
CACCGTTGGAGGAAATGATGTATCTCTTCCGTCTCAATGTCAACGTCATC
AAGGGTTCGTACGAGAGAGGCGCGAGGAGGAAGCTGCCGTTGCCCATGGA
GGCAGCTGGCAAACAGCGCTGTCGGGAAGTGCGTTGTCAATTGAAGGGGG
TTGCCTACTCGAAGAAATATAGACGGGGAGAGAGAGAAGGAGGAGGAACG
GGGTGA
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Coding sequence (CDS) from alignment at chr7:781917..782972-

>NO07G02720.1 ID=NO07G02720.1|Name=NO07G02720.1|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at chr7:781917..782972- (Nannochloropsis oceanica)
ATGATCCAGCTGACCCCTTTGCATACACCTGTTTTTAAAGACTTACGCCT
GCGACGTAACAATCACAAACAACATAGTTGCAAGGATTACAGCCGGGTGC
TCGTGATCCAGGCATTGTGGGCCTCAGGCGTTGCGGTCTGCAACATGGAA
TCGTCAACCTCCCCACCCAATGCGAGCGCCTTGCTCCAAGCCTACCTGGC
CGCGCCTCTACCTTACCTGGTGGACGACTGGGTCAAATCACCTTGTCCCA
CCGATGGATGTACGGCGGAAAAACGTTTTTACTGTGCGAATTGCGTCTGC
TGGATAGGGGTGCCTTCGCATGTGGACGCTCCTCGCCTACGCCTACCCGT
GAATGTGGACATTGTGCTGGCCGATAACCGCAAAAAATCCACTGCTATTC
AAGTAGGTGTGGTTGCTTCCTCTTCTATCCGTGTATGGGATTCGTGGACC
GGGGGTTTGGAGGCACTGGAAAGGGAAAATTGGGATGTGGAGAAGACTCT
CGTTCTCTTTCCCTCCAAAGACGCAATCACACTTGATGAGCTTCCCGTTG
CAGATCTCGCATCAATTGAACGTGTGGTTGTTTTGGATTCACGATGGAAT
AATACAACCAAGGTGTTAGAGCACCCAGGGATCACGAGGTTGACCAAAAG
GGTGAAGCTAAAGGACCCTCCGAAAGAATCATTGTGTTGGCGCTATCACT
CAAAGGGAGAGGGTTTGTTGTCCTCCGCCGAAGCCTTGTATTTTCTACTC
AAGGATTATGTCGGCTTGACGGGAAAAGGTGCAAAACGATTGAATGACAA
AGCAGATGGGAGCGGGCGAGAGGAAGAGAGGGAGGATAAGGAGGAAACTG
CACCGTTGGAGGAAATGATGTATCTCTTCCGTCTCAATGTCAACGTCATC
AAGGGTTCGTACGAGAGAGGCGCGAGGAGGAAGCTGCCGTTGCCCATGGA
GGCAGCTGGCAAACAGCGCTGTCGGGAAGTGCGTTGTCAATTGAAGGGGG
TTGCCTACTCGAAGAAATATAGACGGGGAGAGAGAGAAGGAGGAGGAACG
GGGTGA
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Synonyms
Publications