NO07G02710.2, NO07G02710.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02710.2
Unique NameNO07G02710.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1918
Alignment locationchr7:781841..783862 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:781841..783862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02710.2 vs.
Match: EWM27108.1 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana])

HSP 1 Score: 183.0 bits (463), Expect = 5.100e-43
Identity = 84/104 (80.77%), Postives = 92/104 (88.46%), Query Frame = 0 
Query:    2 FHRYDVTPLPAEASRGQVIVQAVRIRTAGACKHSFLLATFLGLYSGTSCAAEKTIGRRNWATSFVGGFSAGTFAGLTTGHPHHAITWGVGTGLASMIVYALQGG 106
            FHRYD  PLP +ASRGQ++++  R R  GACKHSFLLATFLGLYSG+SC AEKT+GRRNWATSFVGG SAG FAGLTTGHPHHA+TWGVGTGLASMIVY LQGG
Sbjct:   37 FHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAGAFAGLTTGHPHHAMTWGVGTGLASMIVYGLQGG 140
The following BLAST results are available for this feature:
BLAST of NO07G02710.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27108.15.100e-4380.77Mitochondrial inner membrane translocase subunit T... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02710NO07G02710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02710.2NO07G02710.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02710.2.cds1NO07G02710.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02710.2.cds2NO07G02710.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02710.2 ID=NO07G02710.2|Name=NO07G02710.2|organism=Nannochloropsis oceanica|type=mRNA|length=1918bp
TACGCTGTCCCTCATTACGCTTCTTTCATTTTCTTACTTCCCATTTTCAG
TCTTTTCCGGCAGCAGTAACTTTCCGTCACCCCGTTCCTCCTCCTTCTCT
CTCTCCCCGTCTATATTTCTTCGAGTAGGCAACCCCCTTCAATTGACAAC
GCACTTCCCGACAGCGCTGTTTGCCAGCTGCCTCCATGGGCAACGGCAGC
TTCCTCCTCGCGCCTCTCTCGTACGAACCCTTGATGACGTTGACATTGAG
ACGGAAGAGATACATCATTTCCTCCAACGGTGCAGTTTCCTCCTTATCCT
CCCTCTCTTCCTCTCGCCCGCTCCCATCTGCTTTGTCATTCAATCGTTTT
GCACCTTTTCCCGTCAAGCCGACATAATCCTTGAGTAGAAAATACAAGGC
TTCGGCGGAGGACAACAAACCCTCTCCCTTTGAGTGATAGCGCCAACACA
ATGATTCTTTCGGAGGGTCCTTTAGCTTCACCCTTTTGGTCAACCTCGTG
ATCCCTGGGTGCTCTAACACCTTGGTTGTATTATTCCATCGTGAATCCAA
AACAACCACACGTTCAATTGATGCGAGATCTGCAACGGGAAGCTCATCAA
GTGTGATTGCGTCTTTGGAGGGAAAGAGAACGAGAGTCTTCTCCACATCC
CAATTTTCCCTTTCCAGTGCCTCCAAACCCCCGGTCCACGAATCCCATAC
ACGGATAGAAGAGGAAGCAACCACACCTACTTGAATAGCAGTGGATTTTT
TGCGGTTATCGGCCAGCACAATGTCCACATTCACGGGTAGGCGTAGGCGA
GGAGCGTCCACATGCGAAGGCACCCCTATCCAGCAGACGCAATTCGCACA
GTAAAAACGTTTTTCCGCCGTACATCCATCGGTGGGACAAGGTGATTTGA
CCCAGTCGTCCACCAGGTAAGGTAGAGGCGCGGCCAGGTAGGCTTGGAGC
AAGGCGCTCGCATTGGGTGGGGAGGTTGACGATTCCATGTTGCAGACCGC
AACGCCTGAGGCCCACAATGCCTGGATCACGAGCACCCGGCTGTAATCCT
TGCAACTATGTTGTTTGTGATTGTTACGTCGCAGGCGTAAGTCTTTAAAA
ACAGGTGTATGCAAAGGGGTCAGCTGGATCATTCCCCTCGACATGGACGG
CGACGACGAGCAATGTTACTAACATCACTCTGTCGCCCCTCAAACCACAC
TACTACTCATCTAGCAGCCCCATGCCGGTGGCATACCCAACTCAAAGGTA
CAGTCCGCCATGCGACGCGCGACTGGCAGAAGGTAAGAGACACTGGGCTA
TTATATTGCCACACCCACTCCACTCCCCCCTCTCCCACCCTCCCTAATCT
CTCGTCCTCTGTCTCTTGACTCCCCCAACCATTTCCCTCCAGGGTGTATT
CGTGGCTTCTATGTTGGGGCATTGTGGGGCGCCATGTTTCATCGGTACGA
TGTCACACCTTTACCGGCAGAGGCGTCGCGAGGACAAGTCATTGTCCAAG
CCGTGAGAATACGGACCGCCGGCGCCTGCAAGCATTCCTTCCTCCTGGCC
ACGTTCCTGGGGCTGTACAGTGGCACCTCGTGCGCAGCGGAGAAGACAAT
CGGGCGACGGAATTGGGCCACCAGTTTTGTGGGAGGTTTTAGCGCAGGCA
CTTTCGCAGGGCTTACAACAGGCCACCCGCATCATGCAATTACTTGGGGG
GTAGGGACGGGCTTGGCGAGCATGATTGTGTATGCTTTACAGGGCGGCGG
GCCGTGAGGAGGTGGGGCATGGGCCATGATGCAAGGCGGTGTGGAGGAGG
CCTGGGAAAGGAAAGAATAGCGATATTCCAAATGTACGAATCAATTTATC
AAAGAAGAAAACTATTGTGCCCTTGATTAGATTTAGACGTCTGTTTGGGA
AATGTTCACGGGAAAAAA
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protein sequence of NO07G02710.2

>NO07G02710.2-protein ID=NO07G02710.2-protein|Name=NO07G02710.2|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MFHRYDVTPLPAEASRGQVIVQAVRIRTAGACKHSFLLATFLGLYSGTSC
AAEKTIGRRNWATSFVGGFSAGTFAGLTTGHPHHAITWGVGTGLASMIVY
ALQGGGP*
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mRNA from alignment at chr7:781841..783862+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02710.2 ID=NO07G02710.2|Name=NO07G02710.2|organism=Nannochloropsis oceanica|type=mRNA|length=2022bp|location=Sequence derived from alignment at chr7:781841..783862+ (Nannochloropsis oceanica)
TACGCTGTCCCTCATTACGCTTCTTTCATTTTCTTACTTCCCATTTTCAG
TCTTTTCCGGCAGCAGTAACTTTCCGTCACCCCGTTCCTCCTCCTTCTCT
CTCTCCCCGTCTATATTTCTTCGAGTAGGCAACCCCCTTCAATTGACAAC
GCACTTCCCGACAGCGCTGTTTGCCAGCTGCCTCCATGGGCAACGGCAGC
TTCCTCCTCGCGCCTCTCTCGTACGAACCCTTGATGACGTTGACATTGAG
ACGGAAGAGATACATCATTTCCTCCAACGGTGCAGTTTCCTCCTTATCCT
CCCTCTCTTCCTCTCGCCCGCTCCCATCTGCTTTGTCATTCAATCGTTTT
GCACCTTTTCCCGTCAAGCCGACATAATCCTTGAGTAGAAAATACAAGGC
TTCGGCGGAGGACAACAAACCCTCTCCCTTTGAGTGATAGCGCCAACACA
ATGATTCTTTCGGAGGGTCCTTTAGCTTCACCCTTTTGGTCAACCTCGTG
ATCCCTGGGTGCTCTAACACCTTGGTTGTATTATTCCATCGTGAATCCAA
AACAACCACACGTTCAATTGATGCGAGATCTGCAACGGGAAGCTCATCAA
GTGTGATTGCGTCTTTGGAGGGAAAGAGAACGAGAGTCTTCTCCACATCC
CAATTTTCCCTTTCCAGTGCCTCCAAACCCCCGGTCCACGAATCCCATAC
ACGGATAGAAGAGGAAGCAACCACACCTACTTGAATAGCAGTGGATTTTT
TGCGGTTATCGGCCAGCACAATGTCCACATTCACGGGTAGGCGTAGGCGA
GGAGCGTCCACATGCGAAGGCACCCCTATCCAGCAGACGCAATTCGCACA
GTAAAAACGTTTTTCCGCCGTACATCCATCGGTGGGACAAGGTGATTTGA
CCCAGTCGTCCACCAGGTAAGGTAGAGGCGCGGCCAGGTAGGCTTGGAGC
AAGGCGCTCGCATTGGGTGGGGAGGTTGACGATTCCATGTTGCAGACCGC
AACGCCTGAGGCCCACAATGCCTGGATCACGAGCACCCGGCTGTAATCCT
TGCAACTATGTTGTTTGTGATTGTTACGTCGCAGGCGTAAGTCTTTAAAA
ACAGGTGTATGCAAAGGGGTCAGCTGGATCATTCCCCTCGACATGGACGG
CGACGACGAGCAATGTTACTAACATCACTCTGTCGCCCCTCAAACCACAC
TACTACTCATCTAGCAGCCCCATGCCGGTGGCATACCCAACTCAAAGGTA
CAGTCCGCCATGCGACGCGCGACTGGCAGAAGGTAAGAGACACTGGGCTA
TTATATTGCCACACCCACTCCACTCCCCCCTCTCCCACCCTCCCTAATCT
CTCGTCCTCTGTCTCTTGACTCCCCCAACCATTTCCCTCCAGGGTGTATT
CGTGGCTTCTATGTTGGGGCATTGTGGGGCGCCATGTTTCATCGGTACGA
TGTCACACCTTTACCGGCAGAGGCGTCGCGAGGACAAGTCATTGTCCAAG
CCGTGAGAATACGGACCGGTGCGTGACGGGAAGGTAGGGGATGGAAGGGC
AACCGCATGCGCTGAATGCTCGCGAAGGCTAATTCACACCCTGACATCTG
ATAACTTTCCATTTAACCACAGCCGGCGCCTGCAAGCATTCCTTCCTCCT
GGCCACGTTCCTGGGGCTGTACAGTGGCACCTCGTGCGCAGCGGAGAAGA
CAATCGGGCGACGGAATTGGGCCACCAGTTTTGTGGGAGGTTTTAGCGCA
GGCACTTTCGCAGGGCTTACAACAGGCCACCCGCATCATGCAATTACTTG
GGGGGTAGGGACGGGCTTGGCGAGCATGATTGTGTATGCTTTACAGGGCG
GCGGGCCGTGAGGAGGTGGGGCATGGGCCATGATGCAAGGCGGTGTGGAG
GAGGCCTGGGAAAGGAAAGAATAGCGATATTCCAAATGTACGAATCAATT
TATCAAAGAAGAAAACTATTGTGCCCTTGATTAGATTTAGACGTCTGTTT
GGGAAATGTTCACGGGAAAAAA
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Coding sequence (CDS) from alignment at chr7:781841..783862+

>NO07G02710.2 ID=NO07G02710.2|Name=NO07G02710.2|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at chr7:781841..783862+ (Nannochloropsis oceanica)
ATGTTTCATCGGTACGATGTCACACCTTTACCGGCAGAGGCGTCGCGAGG
ACAAGTCATTGTCCAAGCCGTGAGAATACGGACCGCCGGCGCCTGCAAGC
ATTCCTTCCTCCTGGCCACGTTCCTGGGGCTGTACAGTGGCACCTCGTGC
GCAGCGGAGAAGACAATCGGGCGACGGAATTGGGCCACCAGTTTTGTGGG
AGGTTTTAGCGCAGGCACTTTCGCAGGGCTTACAACAGGCCACCCGCATC
ATGCAATTACTTGGGGGGTAGGGACGGGCTTGGCGAGCATGATTGTGTAT
GCTTTACAGGGCGGCGGGCCGTGA
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Synonyms
Publications