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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:772939..775826 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G02680.1 vs.
Match: EWM27104.1 (abc1 family protein [Nannochloropsis gaditana]) HSP 1 Score: 929.9 bits (2402), Expect = 4.500e-267 Identity = 475/662 (71.75%), Postives = 549/662 (82.93%), Query Frame = 0
Query: 1 MLSSKAGRLLLL-CSGGGGAVMALSTPETAASPSLRYVVEDKNISERLRRLKHEAHAALGLDAVERAGRTLGYGLLTAVDYKYSLSGLESGSKEYKEKQSEVHLRAAKRILHVCQSQGGVFIKAG-----LVKILPDEFTDTLRVLQDRNPGEPFEDICRVLEEDLGVPWHKLYASFSPTPIAAASIAQVHRAVTYDGYAVAVKIQYPRLASQVQTDFTTLKVLATVVGTLFTNWEYTWLFPELEESVRLELDFMQEATNGERVGKLLERDRRIHIPQVRWDLSSTRVLTMEYIEGVKVTDVQTLRSKGIDPRAVGETISNLFSLMVFSLGLTHCDPHPGNLLIRHPPPPSSALRKFSWRVQEFLGLRPNFEVVLLDHGLYRRLDETFRLSYCNLWKSFMTRDVALGRAATRALGLHEDFFELLSIISVNRTPTSQGGLGQQMSDSERSRIREKYRDRKKYGSEQLLKLIQSLPRDVLFVLRSNSLVRSLNTELGANVGTRFRIFGSSAVVGLSTPTPSSLPPSAYFLEEMRDSCRIQPGVGRVLQKRQKRDLITNPEASLNKSTASEAFLFSSAGGFGVDKRGVWWRDWKEAKRQILVVDLRVRLWMVDAAIEWAIWARTRLPLPAMEGGRGVGGIGAGVGGETMVEKQLHVNEGTEEERE 657
MLSSKAGRLL L +GG +++A + A +R +EDKN+S+RLRRL+ E + L LD+VERAGRTL YGLLTA DYK+SL+GLE G+++YKEKQSEVHLRAA+RIL+VCQ QGGVF+KAG LVKILPDEFTDTLRVLQD+NPGE FED+CRVLEEDLGVPWH+L+A+FSP PIAAAS+AQVHRA T+DG VAVKIQYPRLASQV++DF TLKVLATVVG +F +WEYTWLFPELEESV LELDF+QEATNGERVG+LLERD RIHIP+VRWDLSS RVLTME+I+GVKVTDV L++ GIDPRAVGETISNLFSLMVFSLGL HCDPHPGNLLIRHPPPP SA R+++WR+Q LGLRPNFEVVLLDHGLYRRLDE+FR SYCNLWK+F+TRD LGRAATRA+GL EDFFELLSIISVNRTPTS+ GLG+QMS+SER RIREKYRDR KYG+EQL KLI+SLPRDVLFVLRSNSLVRSLNTELGANVGTRFRIFGSSA+ GLS P P LP AYFL+E+RD ++ PG GRVLQKR+K +++ PEA LN +TASEA LFSS + WKEA+RQ+++ DLR+RLW+VDAA EW W R R+P A + VGGE MVE+QLHV+ E ++E
Sbjct: 1 MLSSKAGRLLWLGAAGGSSSMVAFALANHTAETPVRLTIEDKNLSDRLRRLQREVYETLRLDSVERAGRTLSYGLLTAADYKFSLAGLEPGTEKYKEKQSEVHLRAAQRILYVCQRQGGVFVKAGQYISSLVKILPDEFTDTLRVLQDKNPGESFEDVCRVLEEDLGVPWHQLFAAFSPKPIAAASLAQVHRATTHDGDEVAVKIQYPRLASQVESDFFTLKVLATVVGAMFRDWEYTWLFPELEESVHLELDFLQEATNGERVGRLLERDGRIHIPRVRWDLSSARVLTMEFIDGVKVTDVGRLKASGIDPRAVGETISNLFSLMVFSLGLVHCDPHPGNLLIRHPPPPRSAPRRWAWRLQGLLGLRPNFEVVLLDHGLYRRLDESFRQSYCNLWKAFVTRDAGLGRAATRAMGLDEDFFELLSIISVNRTPTSRNGLGEQMSESERKRIREKYRDRSKYGAEQLKKLIESLPRDVLFVLRSNSLVRSLNTELGANVGTRFRIFGSSAMTGLSMPAPRVLPSQAYFLDEIRDYSQVLPGGGRVLQKRKKSEMLNRPEAPLNSATASEAVLFSSYTRPSL---------WKEAQRQVMLTDLRLRLWLVDAAFEWMTWLRRRIPSNA-------EALPVTVGGEKMVERQLHVDLEEEGDKE 646
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G02680.1 ID=NO07G02680.1|Name=NO07G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1998bp ATGCTATCGAGCAAGGCAGGCCGACTTTTGTTGCTATGTAGCGGTGGCGG TGGCGCGGTCATGGCCCTTTCCACACCAGAAACGGCTGCTTCGCCTTCGC TTAGATACGTCGTGGAGGACAAGAATATTTCGGAGCGCCTCCGCCGCCTA AAGCACGAGGCTCACGCCGCCCTGGGCTTGGATGCGGTCGAGAGAGCGGG CCGAACATTGGGCTATGGACTTTTGACGGCTGTAGACTACAAGTATTCTC TCTCGGGGTTAGAGTCAGGGTCGAAGGAATACAAAGAGAAGCAAAGCGAG GTGCATCTCCGGGCTGCGAAACGTATCTTGCACGTGTGCCAGAGTCAGGG AGGCGTTTTCATCAAGGCGGGCCTGGTCAAGATCTTGCCGGACGAATTCA CTGATACTTTGCGAGTGCTGCAAGACAGAAACCCGGGCGAGCCATTCGAG GACATTTGTCGTGTGTTGGAGGAAGACCTCGGTGTGCCCTGGCACAAGCT TTATGCCTCCTTCTCCCCCACCCCCATCGCGGCCGCCTCCATCGCACAAG TCCATCGAGCAGTAACATATGACGGGTACGCTGTTGCAGTCAAAATTCAA TACCCTCGGCTGGCGAGTCAGGTGCAAACGGATTTCACGACACTGAAAGT GTTGGCAACCGTTGTGGGGACGCTGTTTACGAATTGGGAGTACACGTGGC TCTTCCCAGAGCTGGAGGAGAGTGTGCGCTTGGAGCTTGATTTTATGCAG GAGGCAACGAATGGAGAGCGGGTCGGGAAGTTGTTGGAGAGGGACAGGCG TATCCACATCCCGCAGGTGAGGTGGGATTTGAGCAGCACGCGGGTGCTAA CGATGGAGTACATTGAGGGTGTGAAGGTGACAGATGTACAGACGTTGAGG AGCAAGGGGATTGACCCGCGGGCTGTGGGCGAGACGATTTCAAACTTGTT CAGCTTGATGGTGTTTTCTCTGGGGCTGACGCATTGTGACCCACATCCCG GTAACCTTCTCATCCGCCATCCCCCCCCGCCGTCCTCTGCCCTCAGGAAG TTCTCCTGGCGAGTGCAAGAGTTTCTTGGGCTGCGTCCTAATTTTGAGGT GGTACTGCTGGACCATGGGCTGTACCGGCGACTTGATGAGACATTTCGAC TGAGTTACTGCAACCTCTGGAAGTCCTTCATGACCCGGGACGTAGCCCTC GGCCGAGCTGCCACACGAGCCCTCGGCCTCCACGAAGACTTTTTTGAGCT CCTATCCATCATAAGCGTGAACCGCACCCCTACCTCCCAGGGTGGGCTGG GGCAGCAAATGTCCGACTCGGAGCGGAGTCGCATTCGAGAGAAGTACAGG GATCGGAAGAAATACGGGTCGGAACAACTACTCAAACTCATCCAATCCCT CCCCCGGGACGTCCTCTTCGTACTCCGTTCCAATTCGCTTGTACGCTCTC TCAACACGGAGCTAGGCGCCAATGTGGGGACGCGCTTCCGAATTTTTGGG TCCTCGGCTGTTGTGGGGTTGAGTACACCGACTCCATCCTCCCTCCCTCC CTCGGCTTACTTTTTGGAGGAGATGAGAGATTCGTGCAGGATTCAACCTG GGGTGGGGAGGGTATTACAGAAAAGGCAAAAGAGAGATTTGATTACAAAC CCGGAGGCGAGCTTGAATAAGTCGACGGCATCGGAGGCGTTTTTGTTTTC GTCTGCTGGAGGATTTGGAGTGGATAAAAGGGGTGTGTGGTGGAGGGATT GGAAGGAGGCGAAGAGGCAGATACTGGTGGTCGATTTGAGAGTGAGATTA TGGATGGTAGATGCGGCGATCGAGTGGGCAATATGGGCTCGGACACGATT ACCGTTGCCGGCTATGGAGGGAGGGAGGGGGGTTGGGGGGATAGGAGCGG GAGTGGGAGGAGAGACGATGGTTGAGAAGCAGTTGCATGTGAATGAGGGG ACGGAGGAGGAGAGGGAGAGGGTGGCGCGAAAACCGACTGTGTCATAG back to topprotein sequence of NO07G02680.1 >NO07G02680.1-protein ID=NO07G02680.1-protein|Name=NO07G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=666bp MLSSKAGRLLLLCSGGGGAVMALSTPETAASPSLRYVVEDKNISERLRRL KHEAHAALGLDAVERAGRTLGYGLLTAVDYKYSLSGLESGSKEYKEKQSE VHLRAAKRILHVCQSQGGVFIKAGLVKILPDEFTDTLRVLQDRNPGEPFE DICRVLEEDLGVPWHKLYASFSPTPIAAASIAQVHRAVTYDGYAVAVKIQ YPRLASQVQTDFTTLKVLATVVGTLFTNWEYTWLFPELEESVRLELDFMQ EATNGERVGKLLERDRRIHIPQVRWDLSSTRVLTMEYIEGVKVTDVQTLR SKGIDPRAVGETISNLFSLMVFSLGLTHCDPHPGNLLIRHPPPPSSALRK FSWRVQEFLGLRPNFEVVLLDHGLYRRLDETFRLSYCNLWKSFMTRDVAL GRAATRALGLHEDFFELLSIISVNRTPTSQGGLGQQMSDSERSRIREKYR DRKKYGSEQLLKLIQSLPRDVLFVLRSNSLVRSLNTELGANVGTRFRIFG SSAVVGLSTPTPSSLPPSAYFLEEMRDSCRIQPGVGRVLQKRQKRDLITN PEASLNKSTASEAFLFSSAGGFGVDKRGVWWRDWKEAKRQILVVDLRVRL WMVDAAIEWAIWARTRLPLPAMEGGRGVGGIGAGVGGETMVEKQLHVNEG TEEERERVARKPTVS* back to topmRNA from alignment at chr7:772939..775826- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G02680.1 ID=NO07G02680.1|Name=NO07G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2888bp|location=Sequence derived from alignment at chr7:772939..775826- (Nannochloropsis oceanica) ATGCTATCGAGCAAGGCAGGCCGACTTTTGTTGCTATGTAGCGGTGGCGG
TGGCGCGGTCATGGCCCTTTCCACACCAGAAACGGCTGCTTCGCCTTCGC
TTAGATACGTCGTGGAGGACAAGGTAAGTAAGTGTCAGTGTGGGGAGTCA
GAAGGGAAGGGAGCAAACAATTCACCGCCTTCTACGAATCGAATGGGACG
GTAGCGGGTCTATGTGGTTTTGGGAACAGAAAGGGATGGAGCGGGTATCC
GTAGTTGTGTGCGTCGCATGTGCGGCGGAGACACTTTTCTTTTTTACGAG
ACCATGCGTAGGAAATGTGATGGTACAAGCCCACAAGGCAGGCATAATTC
AATGATATATCGCGCTGAAGCCATAAATGTCCTAAACCGCTTTGTGGGGA
ATTTCCCTATTTCATCCGCAGAATATTTCGGAGCGCCTCCGCCGCCTAAA
GCACGAGGCTCACGCCGCCCTGGGCTTGGATGCGGTCGAGAGAGCGGGCC
GAACATTGGGCTATGGACTTTTGACGGCTGTAGACTACAAGTATTCTCTC
TCGGGGTTAGAGTCAGGGTCGAAGGAATACAAAGAGAAGCAAAGCGAGGT
GCATCTCCGGGCTGCGAAACGTATCTTGCACGTGTGCCAGAGTCAGGGAG
GCGTTTTCATCAAGGCGGGGTAAGTAAGATGAAAGAGAGTGGTTGCTTCA
AATGCACACAAAATAGTGCTCGCTCATCCGACTCGACCTTCTCCTTTCTT
CCTCCCCCGCCCCCCTCGCCGTCAATGAAGCCAATATATCTCCAGCCTGG
TCAAGATCTTGCCGGACGAATTCACTGATACTTTGCGAGTGCTGCAAGAC
AGAAACCCGGGCGAGCCATTCGAGGACATTTGTCGTGTGTTGGAGGTGAG
AGCGCGTGTCTGGAAGGGCTAGTACCGCTCGCTCCACGGCTAGTGCCGCT
CGATCTGCTTTAATTTTATACCAATGAAGACATTTCGAAATGATACAACA
ATAATAGTCATGCACAACCTGTGGCCACTCTCTGATGACAGGAAGACCTC
GGTGTGCCCTGGCACAAGCTTTATGCCTCCTTCTCCCCCACCCCCATCGC
GGCCGCCTCCATCGCACAAGTCCATCGAGCAGTAACATATGACGGGTACG
CTGTTGCAGTCAAAATTCAATACCCTCGGCTGGCGAGTCAGGTGCAAACG
GATTTCACGACACTGAAAGTGTTGGCAACCGTTGTGGGGACGCTGTTTAC
GAATTGGGAGTACACGTGGCTCTTCCCAGAGCTGGAGGAGAGTGTGCGCT
TGGAGCTTGATTTTATGCAGGAGGCAACGAATGGAGAGCGGGTCGGGAAG
TTGTTGGAGAGGGACAGGCGTATCCACATCCCGCAGGTGAGGTGGGATTT
GAGCAGCACGCGGGTGCTAACGATGGAGTACATTGAGGGTGTGAAGGTGA
CAGATGTACAGACGTTGAGGAGCAAGGGGATTGACCCGCGGGCTGTGGGC
GAGACGATTTCAAACTTGTTCAGCTTGATGGTGTTTTCTCTGGGGCTGAC
GCATTGTGACCCACATCCCGGTAGGGCAAGCACGTCTGATAATTCGCGGG
GGGTCTTATGCTTCCTTGATTTGTACATGTTGTGTGTTTCTCCCTCTTTT
CTTCTTGCTAACATTCGTCTCTTTCTTTTCCTGCCTCCCTCCCTTCTTCT
CTCTTTTCCTCCCTCCTCCTTCCCGCAGGTAACCTTCTCATCCGCCATCC
CCCCCCGCCGTCCTCTGCCCTCAGGAAGTTCTCCTGGCGAGTGCAAGAGT
TTCTTGGGCTGCGTCCTAATTTTGAGGTGGTACTGCTGGACCATGGGCTG
TACCGGCGACTTGATGAGACATTTCGACTGAGGTCCGTGGGGTGGTTGAA
GGGAGGAGAGCGACCTATTGCCATTATTCCCTTAGAGAGGCGCGTGTATG
TCCCAGCAAGTCGTCTCCAATTTCTCATTCCTTTTTTTTTCCTACCTCCC
CTTATTCCCCCATTTTCATTTCTCTTCTCCTCGCTTTCAAACAGTTACTG
CAACCTCTGGAAGTCCTTCATGACCCGGGACGTAGCCCTCGGCCGAGCTG
CCACACGAGCCCTCGGCCTCCACGAAGACTTTTTTGAGCTCCTATCCATC
ATAAGCGTGAACCGCACCCCTACCTCCCAGGGTGGGCTGGGGCAGCAAAT
GTCCGACTCGGAGCGGAGTCGCATTCGAGAGAAGTACAGGGATCGGAAGA
AATACGGGTCGGAACAACTACTCAAACTCATCCAATCCCTCCCCCGGGAC
GTCCTCTTCGTACTCCGTTCCAATTCGCTTGTACGCTCTCTCAACACGGA
GCTAGGCGCCAATGTGGGGACGCGCTTCCGAATTTTTGGGTCCTCGGCTG
TTGTGGGGTTGAGTACACCGACTCCATCCTCCCTCCCTCCCTCGGCTTAC
TTTTTGGAGGAGATGAGAGATTCGTGCAGGATTCAACCTGGGGTGGGGAG
GGTATTACAGAAAAGGCAAAAGAGAGATTTGATTACAAACCCGGAGGCGA
GCTTGAATAAGTCGACGGCATCGGAGGCGTTTTTGTTTTCGTCTGCTGGA
GGATTTGGAGTGGATAAAAGGGGTGTGTGGTGGAGGGATTGGAAGGAGGC
GAAGAGGCAGATACTGGTGGTCGATTTGAGAGTGAGATTATGGATGGTAG
ATGCGGCGATCGAGTGGGCAATATGGGCTCGGACACGATTACCGTTGCCG
GCTATGGAGGGAGGGAGGGGGGTTGGGGGGATAGGAGCGGGAGTGGGAGG
AGAGACGATGGTTGAGAAGCAGTTGCATGTGAATGAGGGGACGGAGGAGG
AGAGGGAGAGGGTGGCGCGAAAACCGACTGTGTCATAG back to topCoding sequence (CDS) from alignment at chr7:772939..775826- >NO07G02680.1 ID=NO07G02680.1|Name=NO07G02680.1|organism=Nannochloropsis oceanica|type=CDS|length=1998bp|location=Sequence derived from alignment at chr7:772939..775826- (Nannochloropsis oceanica) ATGCTATCGAGCAAGGCAGGCCGACTTTTGTTGCTATGTAGCGGTGGCGG TGGCGCGGTCATGGCCCTTTCCACACCAGAAACGGCTGCTTCGCCTTCGC TTAGATACGTCGTGGAGGACAAGAATATTTCGGAGCGCCTCCGCCGCCTA AAGCACGAGGCTCACGCCGCCCTGGGCTTGGATGCGGTCGAGAGAGCGGG CCGAACATTGGGCTATGGACTTTTGACGGCTGTAGACTACAAGTATTCTC TCTCGGGGTTAGAGTCAGGGTCGAAGGAATACAAAGAGAAGCAAAGCGAG GTGCATCTCCGGGCTGCGAAACGTATCTTGCACGTGTGCCAGAGTCAGGG AGGCGTTTTCATCAAGGCGGGCCTGGTCAAGATCTTGCCGGACGAATTCA CTGATACTTTGCGAGTGCTGCAAGACAGAAACCCGGGCGAGCCATTCGAG GACATTTGTCGTGTGTTGGAGGAAGACCTCGGTGTGCCCTGGCACAAGCT TTATGCCTCCTTCTCCCCCACCCCCATCGCGGCCGCCTCCATCGCACAAG TCCATCGAGCAGTAACATATGACGGGTACGCTGTTGCAGTCAAAATTCAA TACCCTCGGCTGGCGAGTCAGGTGCAAACGGATTTCACGACACTGAAAGT GTTGGCAACCGTTGTGGGGACGCTGTTTACGAATTGGGAGTACACGTGGC TCTTCCCAGAGCTGGAGGAGAGTGTGCGCTTGGAGCTTGATTTTATGCAG GAGGCAACGAATGGAGAGCGGGTCGGGAAGTTGTTGGAGAGGGACAGGCG TATCCACATCCCGCAGGTGAGGTGGGATTTGAGCAGCACGCGGGTGCTAA CGATGGAGTACATTGAGGGTGTGAAGGTGACAGATGTACAGACGTTGAGG AGCAAGGGGATTGACCCGCGGGCTGTGGGCGAGACGATTTCAAACTTGTT CAGCTTGATGGTGTTTTCTCTGGGGCTGACGCATTGTGACCCACATCCCG GTAACCTTCTCATCCGCCATCCCCCCCCGCCGTCCTCTGCCCTCAGGAAG TTCTCCTGGCGAGTGCAAGAGTTTCTTGGGCTGCGTCCTAATTTTGAGGT GGTACTGCTGGACCATGGGCTGTACCGGCGACTTGATGAGACATTTCGAC TGAGTTACTGCAACCTCTGGAAGTCCTTCATGACCCGGGACGTAGCCCTC GGCCGAGCTGCCACACGAGCCCTCGGCCTCCACGAAGACTTTTTTGAGCT CCTATCCATCATAAGCGTGAACCGCACCCCTACCTCCCAGGGTGGGCTGG GGCAGCAAATGTCCGACTCGGAGCGGAGTCGCATTCGAGAGAAGTACAGG GATCGGAAGAAATACGGGTCGGAACAACTACTCAAACTCATCCAATCCCT CCCCCGGGACGTCCTCTTCGTACTCCGTTCCAATTCGCTTGTACGCTCTC TCAACACGGAGCTAGGCGCCAATGTGGGGACGCGCTTCCGAATTTTTGGG TCCTCGGCTGTTGTGGGGTTGAGTACACCGACTCCATCCTCCCTCCCTCC CTCGGCTTACTTTTTGGAGGAGATGAGAGATTCGTGCAGGATTCAACCTG GGGTGGGGAGGGTATTACAGAAAAGGCAAAAGAGAGATTTGATTACAAAC CCGGAGGCGAGCTTGAATAAGTCGACGGCATCGGAGGCGTTTTTGTTTTC GTCTGCTGGAGGATTTGGAGTGGATAAAAGGGGTGTGTGGTGGAGGGATT GGAAGGAGGCGAAGAGGCAGATACTGGTGGTCGATTTGAGAGTGAGATTA TGGATGGTAGATGCGGCGATCGAGTGGGCAATATGGGCTCGGACACGATT ACCGTTGCCGGCTATGGAGGGAGGGAGGGGGGTTGGGGGGATAGGAGCGG GAGTGGGAGGAGAGACGATGGTTGAGAAGCAGTTGCATGTGAATGAGGGG ACGGAGGAGGAGAGGGAGAGGGTGGCGCGAAAACCGACTGTGTCATAG back to top
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