NO07G02610.1, NO07G02610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02610.1
Unique NameNO07G02610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1765
Alignment locationchr7:753545..755309 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:753545..755309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02610.1 vs.
Match: EWM27086.1 (carboxyl-terminal protease [Nannochloropsis gaditana])

HSP 1 Score: 727.2 bits (1876), Expect = 3.500e-206
Identity = 379/439 (86.33%), Postives = 400/439 (91.12%), Query Frame = 0 
Query:   87 RQSSSSFSSSTPSRHDRKKLNSKSKTTSIKWRPLLAWLLVFIPTLWIPPMPEQLAPLGLQRLGSTGTVSQAVAGLTDEQQLVADVWKRVDKLYLDRTFNGQDWFALRQTALKKPYKTTAQVYDGIKAMLEPLGDPYTRFLPPSQYDSLFGLATGSVAGIGVSLLIDPATQELTVAEVEKGSPAEAGGLRAGDKLLNVDGQATTGLLVDDCANLLRGPAGTKVGVVAKSKTGEAKDLIITRQLIKIQSVEASTATKGGKKVGVIRIRSFSQTTADTVAAELDKLEREGISALVIDLRGNPGGFLGGGIDTARLFLPSYEKIVSVVGKTGIVEEYQTTDEGRDTTKPLFVVVDKRTASASEVLSAALKENGRAKLVGEKTFGKGVVQTIEQVGQGAGVSVTIAAYSTPLGNNINKKGIEVDIPSVCEATDTAVSCLPEGAI 526
            RQS    S+++P    R   +SK +   I+W+PLL WLL+ IP LW PP PEQLAPLGL  LGST TVSQA AGLTDEQQLVADVWKRVDKL+LDRTFNGQDWFALRQ ALKKPYKTTAQVY+GIKAMLEPLGDPYTRFLPPSQYDSLFGLATGSVAG+GVSL IDPATQELT AEVEKGSPAEA GLRAGDKLL VDGQATTGLLVDDCANLLRGPAGTKVGVVA+ K GE+KD+IITRQLIKIQSVEA TA KGGKKVGVIRIRSFSQTTADTVAAEL+KLE+EGISA+VIDLRGNPGGFLGGGIDTARLFLP+YEKIVSVVGKTGIVEEYQTTDEGR+TTKPLFVVVDKRTASASEVLSAALKEN RAKLVGEKTFGKGVVQTIEQVGQ AGVSVTIAAYSTPLGNNINKKGI+VDIPS CEATD AV CLPEG +
Sbjct:  110 RQSPEHDSNASPFPIPR---SSKRRKGPIRWQPLLTWLLLVIPALWSPPTPEQLAPLGLNSLGSTATVSQAAAGLTDEQQLVADVWKRVDKLFLDRTFNGQDWFALRQAALKKPYKTTAQVYEGIKAMLEPLGDPYTRFLPPSQYDSLFGLATGSVAGVGVSLQIDPATQELTAAEVEKGSPAEAAGLRAGDKLLYVDGQATTGLLVDDCANLLRGPAGTKVGVVARGKGGESKDVIITRQLIKIQSVEALTANKGGKKVGVIRIRSFSQTTADTVAAELEKLEKEGISAVVIDLRGNPGGFLGGGIDTARLFLPAYEKIVSVVGKTGIVEEYQTTDEGRETTKPLFVVVDKRTASASEVLSAALKENNRAKLVGEKTFGKGVVQTIEQVGQNAGVSVTIAAYSTPLGNNINKKGIDVDIPSTCEATDKAVQCLPEGVL 545
The following BLAST results are available for this feature:
BLAST of NO07G02610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27086.13.500e-20686.33carboxyl-terminal protease [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02610NO07G02610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02610.1NO07G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02610.1.cds1NO07G02610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02610.1 ID=NO07G02610.1|Name=NO07G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1765bp
ACCGCAGGCCTCGCCAACACAACCAGCACGCCAAGCGACTACGCCAGCCA
GGTTGGACACGCCCAGACTACGCGCCTCCACATGCTCCCCCCAAGCTCGT
TCACCACGGCCATGGCGACCGCCATGCCCCTGGGCTTCCAGCAATGTCTC
GCTTCGCTGCCCAACAGGCAGCGCCCGTACCCCGCCCGTTATCTCTTGCC
CTCCTCGATCCACTCGTCATCAGCATCGTCGTCCAATCCCCCCCGACGGC
TGTCATCCTTCCTGCCCTCCCCACTTTACGCCGCAAGAAGACCTTCGCAT
GAATTGAAAGCCGAGCAATCCCAACGACAATTATCCTCCCGGCAGTCATC
CTCCTCGTTCTCCTCCTCCACACCCTCAAGGCATGACAGGAAAAAATTGA
ACTCAAAATCGAAAACCACCAGCATCAAATGGCGCCCGCTCTTGGCCTGG
CTCTTGGTCTTCATTCCCACACTATGGATCCCACCCATGCCGGAGCAACT
TGCTCCCTTAGGTCTCCAACGCTTGGGAAGCACAGGCACGGTCAGCCAAG
CCGTTGCCGGACTCACGGACGAACAACAACTAGTTGCTGACGTCTGGAAA
CGCGTGGATAAACTCTACCTCGATCGCACATTTAATGGACAAGATTGGTT
CGCCTTGCGTCAAACAGCTTTGAAAAAACCTTACAAGACTACTGCACAAG
TCTATGATGGAATTAAAGCGATGCTGGAGCCCTTAGGTGACCCATACACG
CGCTTCCTCCCTCCTTCCCAGTACGACTCTTTATTCGGTCTCGCCACTGG
AAGTGTCGCTGGGATAGGGGTAAGTTTATTGATAGATCCAGCAACACAAG
AACTAACTGTGGCAGAGGTGGAAAAAGGGTCCCCGGCTGAAGCGGGGGGG
TTGAGAGCAGGTGATAAATTATTGAACGTAGATGGGCAGGCCACCACGGG
CCTACTGGTTGATGATTGTGCTAATCTGTTGCGAGGGCCCGCAGGGACGA
AAGTGGGGGTGGTGGCCAAAAGTAAGACAGGAGAGGCTAAGGATTTGATC
ATTACAAGGCAACTTATCAAGATCCAGAGCGTCGAGGCGTCAACAGCAAC
GAAGGGAGGGAAGAAGGTAGGAGTAATCCGAATTCGGTCTTTTTCGCAGA
CGACTGCCGATACCGTGGCGGCGGAGTTGGACAAACTGGAGAGGGAGGGG
ATTAGTGCGTTGGTCATTGATTTGAGGGGGAACCCGGGTGGGTTCTTGGG
AGGGGGAATTGACACTGCGCGACTTTTCCTGCCTAGCTATGAGAAGATTG
TCTCGGTGGTGGGGAAGACGGGTATTGTGGAGGAGTATCAGACGACGGAT
GAAGGGCGGGATACGACCAAACCTCTATTTGTTGTGGTGGACAAGCGGAC
AGCGAGTGCCTCGGAGGTGTTGTCGGCGGCGTTAAAGGAAAATGGGCGGG
CCAAGCTGGTGGGTGAAAAGACGTTTGGGAAGGGTGTGGTGCAAACGATC
GAGCAGGTTGGGCAGGGAGCAGGAGTGTCTGTGACCATTGCTGCATATTC
GACGCCGTTGGGTAATAATATCAATAAGAAGGGGATTGAGGTTGATATTC
CTTCGGTATGCGAGGCGACAGATACGGCCGTGAGCTGCTTACCGGAGGGG
GCAATTTAAGTAGGGTTGGCGGGAGTCGAGGGGTACAACACAGAATACAT
GCACAGATAATCAAAAGAGCAAGGCACCACGCACACAAAATAAAGAAATA
TTCTCTTTTCCATAC
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protein sequence of NO07G02610.1

>NO07G02610.1-protein ID=NO07G02610.1-protein|Name=NO07G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MLPPSSFTTAMATAMPLGFQQCLASLPNRQRPYPARYLLPSSIHSSSASS
SNPPRRLSSFLPSPLYAARRPSHELKAEQSQRQLSSRQSSSSFSSSTPSR
HDRKKLNSKSKTTSIKWRPLLAWLLVFIPTLWIPPMPEQLAPLGLQRLGS
TGTVSQAVAGLTDEQQLVADVWKRVDKLYLDRTFNGQDWFALRQTALKKP
YKTTAQVYDGIKAMLEPLGDPYTRFLPPSQYDSLFGLATGSVAGIGVSLL
IDPATQELTVAEVEKGSPAEAGGLRAGDKLLNVDGQATTGLLVDDCANLL
RGPAGTKVGVVAKSKTGEAKDLIITRQLIKIQSVEASTATKGGKKVGVIR
IRSFSQTTADTVAAELDKLEREGISALVIDLRGNPGGFLGGGIDTARLFL
PSYEKIVSVVGKTGIVEEYQTTDEGRDTTKPLFVVVDKRTASASEVLSAA
LKENGRAKLVGEKTFGKGVVQTIEQVGQGAGVSVTIAAYSTPLGNNINKK
GIEVDIPSVCEATDTAVSCLPEGAI*
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mRNA from alignment at chr7:753545..755309+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02610.1 ID=NO07G02610.1|Name=NO07G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1765bp|location=Sequence derived from alignment at chr7:753545..755309+ (Nannochloropsis oceanica)
ACCGCAGGCCTCGCCAACACAACCAGCACGCCAAGCGACTACGCCAGCCA
GGTTGGACACGCCCAGACTACGCGCCTCCACATGCTCCCCCCAAGCTCGT
TCACCACGGCCATGGCGACCGCCATGCCCCTGGGCTTCCAGCAATGTCTC
GCTTCGCTGCCCAACAGGCAGCGCCCGTACCCCGCCCGTTATCTCTTGCC
CTCCTCGATCCACTCGTCATCAGCATCGTCGTCCAATCCCCCCCGACGGC
TGTCATCCTTCCTGCCCTCCCCACTTTACGCCGCAAGAAGACCTTCGCAT
GAATTGAAAGCCGAGCAATCCCAACGACAATTATCCTCCCGGCAGTCATC
CTCCTCGTTCTCCTCCTCCACACCCTCAAGGCATGACAGGAAAAAATTGA
ACTCAAAATCGAAAACCACCAGCATCAAATGGCGCCCGCTCTTGGCCTGG
CTCTTGGTCTTCATTCCCACACTATGGATCCCACCCATGCCGGAGCAACT
TGCTCCCTTAGGTCTCCAACGCTTGGGAAGCACAGGCACGGTCAGCCAAG
CCGTTGCCGGACTCACGGACGAACAACAACTAGTTGCTGACGTCTGGAAA
CGCGTGGATAAACTCTACCTCGATCGCACATTTAATGGACAAGATTGGTT
CGCCTTGCGTCAAACAGCTTTGAAAAAACCTTACAAGACTACTGCACAAG
TCTATGATGGAATTAAAGCGATGCTGGAGCCCTTAGGTGACCCATACACG
CGCTTCCTCCCTCCTTCCCAGTACGACTCTTTATTCGGTCTCGCCACTGG
AAGTGTCGCTGGGATAGGGGTAAGTTTATTGATAGATCCAGCAACACAAG
AACTAACTGTGGCAGAGGTGGAAAAAGGGTCCCCGGCTGAAGCGGGGGGG
TTGAGAGCAGGTGATAAATTATTGAACGTAGATGGGCAGGCCACCACGGG
CCTACTGGTTGATGATTGTGCTAATCTGTTGCGAGGGCCCGCAGGGACGA
AAGTGGGGGTGGTGGCCAAAAGTAAGACAGGAGAGGCTAAGGATTTGATC
ATTACAAGGCAACTTATCAAGATCCAGAGCGTCGAGGCGTCAACAGCAAC
GAAGGGAGGGAAGAAGGTAGGAGTAATCCGAATTCGGTCTTTTTCGCAGA
CGACTGCCGATACCGTGGCGGCGGAGTTGGACAAACTGGAGAGGGAGGGG
ATTAGTGCGTTGGTCATTGATTTGAGGGGGAACCCGGGTGGGTTCTTGGG
AGGGGGAATTGACACTGCGCGACTTTTCCTGCCTAGCTATGAGAAGATTG
TCTCGGTGGTGGGGAAGACGGGTATTGTGGAGGAGTATCAGACGACGGAT
GAAGGGCGGGATACGACCAAACCTCTATTTGTTGTGGTGGACAAGCGGAC
AGCGAGTGCCTCGGAGGTGTTGTCGGCGGCGTTAAAGGAAAATGGGCGGG
CCAAGCTGGTGGGTGAAAAGACGTTTGGGAAGGGTGTGGTGCAAACGATC
GAGCAGGTTGGGCAGGGAGCAGGAGTGTCTGTGACCATTGCTGCATATTC
GACGCCGTTGGGTAATAATATCAATAAGAAGGGGATTGAGGTTGATATTC
CTTCGGTATGCGAGGCGACAGATACGGCCGTGAGCTGCTTACCGGAGGGG
GCAATTTAAGTAGGGTTGGCGGGAGTCGAGGGGTACAACACAGAATACAT
GCACAGATAATCAAAAGAGCAAGGCACCACGCACACAAAATAAAGAAATA
TTCTCTTTTCCATAC
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Coding sequence (CDS) from alignment at chr7:753545..755309+

>NO07G02610.1 ID=NO07G02610.1|Name=NO07G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=1578bp|location=Sequence derived from alignment at chr7:753545..755309+ (Nannochloropsis oceanica)
ATGCTCCCCCCAAGCTCGTTCACCACGGCCATGGCGACCGCCATGCCCCT
GGGCTTCCAGCAATGTCTCGCTTCGCTGCCCAACAGGCAGCGCCCGTACC
CCGCCCGTTATCTCTTGCCCTCCTCGATCCACTCGTCATCAGCATCGTCG
TCCAATCCCCCCCGACGGCTGTCATCCTTCCTGCCCTCCCCACTTTACGC
CGCAAGAAGACCTTCGCATGAATTGAAAGCCGAGCAATCCCAACGACAAT
TATCCTCCCGGCAGTCATCCTCCTCGTTCTCCTCCTCCACACCCTCAAGG
CATGACAGGAAAAAATTGAACTCAAAATCGAAAACCACCAGCATCAAATG
GCGCCCGCTCTTGGCCTGGCTCTTGGTCTTCATTCCCACACTATGGATCC
CACCCATGCCGGAGCAACTTGCTCCCTTAGGTCTCCAACGCTTGGGAAGC
ACAGGCACGGTCAGCCAAGCCGTTGCCGGACTCACGGACGAACAACAACT
AGTTGCTGACGTCTGGAAACGCGTGGATAAACTCTACCTCGATCGCACAT
TTAATGGACAAGATTGGTTCGCCTTGCGTCAAACAGCTTTGAAAAAACCT
TACAAGACTACTGCACAAGTCTATGATGGAATTAAAGCGATGCTGGAGCC
CTTAGGTGACCCATACACGCGCTTCCTCCCTCCTTCCCAGTACGACTCTT
TATTCGGTCTCGCCACTGGAAGTGTCGCTGGGATAGGGGTAAGTTTATTG
ATAGATCCAGCAACACAAGAACTAACTGTGGCAGAGGTGGAAAAAGGGTC
CCCGGCTGAAGCGGGGGGGTTGAGAGCAGGTGATAAATTATTGAACGTAG
ATGGGCAGGCCACCACGGGCCTACTGGTTGATGATTGTGCTAATCTGTTG
CGAGGGCCCGCAGGGACGAAAGTGGGGGTGGTGGCCAAAAGTAAGACAGG
AGAGGCTAAGGATTTGATCATTACAAGGCAACTTATCAAGATCCAGAGCG
TCGAGGCGTCAACAGCAACGAAGGGAGGGAAGAAGGTAGGAGTAATCCGA
ATTCGGTCTTTTTCGCAGACGACTGCCGATACCGTGGCGGCGGAGTTGGA
CAAACTGGAGAGGGAGGGGATTAGTGCGTTGGTCATTGATTTGAGGGGGA
ACCCGGGTGGGTTCTTGGGAGGGGGAATTGACACTGCGCGACTTTTCCTG
CCTAGCTATGAGAAGATTGTCTCGGTGGTGGGGAAGACGGGTATTGTGGA
GGAGTATCAGACGACGGATGAAGGGCGGGATACGACCAAACCTCTATTTG
TTGTGGTGGACAAGCGGACAGCGAGTGCCTCGGAGGTGTTGTCGGCGGCG
TTAAAGGAAAATGGGCGGGCCAAGCTGGTGGGTGAAAAGACGTTTGGGAA
GGGTGTGGTGCAAACGATCGAGCAGGTTGGGCAGGGAGCAGGAGTGTCTG
TGACCATTGCTGCATATTCGACGCCGTTGGGTAATAATATCAATAAGAAG
GGGATTGAGGTTGATATTCCTTCGGTATGCGAGGCGACAGATACGGCCGT
GAGCTGCTTACCGGAGGGGGCAATTTAA
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Synonyms
Publications