NO07G02600.1, NO07G02600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02600.1
Unique NameNO07G02600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1290
Alignment locationchr7:751356..752645 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:751356..752645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G02600.1 vs.
Match: EWM27092.1 (transcription factor e2fb [Nannochloropsis gaditana])

HSP 1 Score: 305.4 bits (781), Expect = 2.700e-79
Identity = 174/257 (67.70%), Postives = 201/257 (78.21%), Query Frame = 0
Query:  169 KMVSPTPRTVTKARPSPSSRYDSSLGLLTKKFVELLQGQQERGDSLDLNQAAIKLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTSSGCNSSSVNRGIEGEEEEEGGIEEGGNCGEEKRQLQRDMEELRQEEKDLKEYIQKMTKMMQDEQEQNTRLMYVTQEDLGKLPCFEHQTVIAIRAPQGTTLEVPDPDEGMPEGDRKFQVQLNSTNGPVDIYLVTTPPAVEGG------GGGKSEDWMRGKVN 420
            KM SP   +V+KAR SPSSRYDSSLGLLTKKFVELLQGQQ RGDSLDLNQAA+ LSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTS       V+R  EG    E           + RQL+++ME+L+QEE+D+K +IQ MT ++Q E EQNT LMYVTQEDLGKLPC++ QTVIAIRAPQGTTLEVPDPDEGM  G+R++Q+QL S+NGPVDIYLV  P   EGG      GGG++E   RG+++
Sbjct:    7 KMTSPV--SVSKARASPSSRYDSSLGLLTKKFVELLQGQQARGDSLDLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTS-------VSRHGEGSVHSE-----------DMRQLKQEMEDLKQEERDVKGHIQSMTALLQQEGEQNTGLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQIQLVSSNGPVDIYLVNAPEQGEGGEGGGGAGGGQAEASPRGRLD 243          
The following BLAST results are available for this feature:
BLAST of NO07G02600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27092.12.700e-7967.70transcription factor e2fb [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02600NO07G02600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02600.1NO07G02600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02600.1.cds1NO07G02600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02600.1 ID=NO07G02600.1|Name=NO07G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp
ATGACTATGAGCCTGACGACCCCACAAAGATCATCTCGAGGCAATAACGG
CAGCAACACCAACACCACCGCCACCAACAACACCAACAACAACACCTCCA
CCAACCACGACAACGACAACCACAACACCAACAGCAGCAATAGTGGCAAC
AACAGTTGCGGCGGCAGCGGCAGTGGGTCTTCCGGAGGGGGGGCAAAACG
GGCCAAGATGGACCACAGCATCGCAACTAATGGCCCCTCTCTGGCGATCG
GCACGACAACAACAGCTACAGCAGCAGCAGCAGCACTGTTGCCCACTCCG
TCTTCGTCCTCGAAAAAGCGCGGCGGGACAGCAGCAGTAGCAACAGCAGC
AGCAGCGGCGGCAGCAGCAGCAGCAGGAGGGGTAGTGAGAGGTCACCCAC
CACCCCATGTCGTGCCACCAGCCACAGCCTTGGCCGGCAGTGCTACTCCT
GGAGGGGGCGGAGTAGGACGAGGAGGAGGAGGGGGAGGGGAGGGGATCAT
GAGTAAGATGGTCTCGCCCACCCCACGGACCGTAACAAAGGCACGACCCT
CGCCCAGTAGCCGATATGATAGCTCTTTGGGATTGCTCACTAAAAAATTC
GTCGAACTTTTGCAAGGGCAGCAGGAAAGGGGGGATTCATTGGATTTAAA
TCAAGCGGCAATAAAGCTCTCGGTTCAAAAACGGCGAATTTATGATATTA
CGAACGTGTTGGAAGGGATCGGATTGATTGAGAAGAAGAGTAAGAATAAC
ATCGCATGGCGCGGAGCTGCTGCTTCGGCCTTGAGTACCAGCAGTGGTTG
CAACAGTAGCAGTGTCAATAGAGGGATTGAGGGGGAGGAGGAAGAGGAAG
GGGGAATTGAGGAAGGAGGGAACTGTGGGGAGGAGAAGAGGCAGTTGCAA
CGGGATATGGAGGAGCTTCGGCAGGAGGAGAAGGACCTAAAGGAGTATAT
TCAGAAGATGACGAAAATGATGCAAGACGAACAAGAACAGAACACCCGTC
TCATGTACGTCACTCAAGAAGACCTAGGGAAGCTCCCATGCTTCGAGCAT
CAAACCGTCATTGCGATTCGTGCTCCCCAGGGTACCACCTTGGAGGTGCC
TGATCCTGACGAGGGCATGCCGGAGGGAGATCGAAAATTCCAAGTGCAAC
TCAATTCGACCAATGGCCCTGTGGATATTTATTTGGTCACTACTCCGCCT
GCGGTAGAGGGAGGAGGGGGGGGCAAGTCGGAGGACTGGATGAGGGGCAA
GGTCAACAGCTGCAAGGAGATGGAGGGAAGGGGCCGATGA
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protein sequence of NO07G02600.1

>NO07G02600.1-protein ID=NO07G02600.1-protein|Name=NO07G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MTMSLTTPQRSSRGNNGSNTNTTATNNTNNNTSTNHDNDNHNTNSSNSGN
NSCGGSGSGSSGGGAKRAKMDHSIATNGPSLAIGTTTTATAAAAALLPTP
SSSSKKRGGTAAVATAAAAAAAAAAGGVVRGHPPPHVVPPATALAGSATP
GGGGVGRGGGGGGEGIMSKMVSPTPRTVTKARPSPSSRYDSSLGLLTKKF
VELLQGQQERGDSLDLNQAAIKLSVQKRRIYDITNVLEGIGLIEKKSKNN
IAWRGAAASALSTSSGCNSSSVNRGIEGEEEEEGGIEEGGNCGEEKRQLQ
RDMEELRQEEKDLKEYIQKMTKMMQDEQEQNTRLMYVTQEDLGKLPCFEH
QTVIAIRAPQGTTLEVPDPDEGMPEGDRKFQVQLNSTNGPVDIYLVTTPP
AVEGGGGGKSEDWMRGKVNSCKEMEGRGR*
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mRNA from alignment at chr7:751356..752645-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02600.1 ID=NO07G02600.1|Name=NO07G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp|location=Sequence derived from alignment at chr7:751356..752645- (Nannochloropsis oceanica)
ATGACTATGAGCCTGACGACCCCACAAAGATCATCTCGAGGCAATAACGG CAGCAACACCAACACCACCGCCACCAACAACACCAACAACAACACCTCCA CCAACCACGACAACGACAACCACAACACCAACAGCAGCAATAGTGGCAAC AACAGTTGCGGCGGCAGCGGCAGTGGGTCTTCCGGAGGGGGGGCAAAACG GGCCAAGATGGACCACAGCATCGCAACTAATGGCCCCTCTCTGGCGATCG GCACGACAACAACAGCTACAGCAGCAGCAGCAGCACTGTTGCCCACTCCG TCTTCGTCCTCGAAAAAGCGCGGCGGGACAGCAGCAGTAGCAACAGCAGC AGCAGCGGCGGCAGCAGCAGCAGCAGGAGGGGTAGTGAGAGGTCACCCAC CACCCCATGTCGTGCCACCAGCCACAGCCTTGGCCGGCAGTGCTACTCCT GGAGGGGGCGGAGTAGGACGAGGAGGAGGAGGGGGAGGGGAGGGGATCAT GAGTAAGATGGTCTCGCCCACCCCACGGACCGTAACAAAGGCACGACCCT CGCCCAGTAGCCGATATGATAGCTCTTTGGGATTGCTCACTAAAAAATTC GTCGAACTTTTGCAAGGGCAGCAGGAAAGGGGGGATTCATTGGATTTAAA TCAAGCGGCAATAAAGCTCTCGGTTCAAAAACGGCGAATTTATGATATTA CGAACGTGTTGGAAGGGATCGGATTGATTGAGAAGAAGAGTAAGAATAAC ATCGCATGGCGCGGAGCTGCTGCTTCGGCCTTGAGTACCAGCAGTGGTTG CAACAGTAGCAGTGTCAATAGAGGGATTGAGGGGGAGGAGGAAGAGGAAG GGGGAATTGAGGAAGGAGGGAACTGTGGGGAGGAGAAGAGGCAGTTGCAA CGGGATATGGAGGAGCTTCGGCAGGAGGAGAAGGACCTAAAGGAGTATAT TCAGAAGATGACGAAAATGATGCAAGACGAACAAGAACAGAACACCCGTC TCATGTACGTCACTCAAGAAGACCTAGGGAAGCTCCCATGCTTCGAGCAT CAAACCGTCATTGCGATTCGTGCTCCCCAGGGTACCACCTTGGAGGTGCC TGATCCTGACGAGGGCATGCCGGAGGGAGATCGAAAATTCCAAGTGCAAC TCAATTCGACCAATGGCCCTGTGGATATTTATTTGGTCACTACTCCGCCT GCGGTAGAGGGAGGAGGGGGGGGCAAGTCGGAGGACTGGATGAGGGGCAA GGTCAACAGCTGCAAGGAGATGGAGGGAAGGGGCCGATGA
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Coding sequence (CDS) from alignment at chr7:751356..752645-

>NO07G02600.1 ID=NO07G02600.1|Name=NO07G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr7:751356..752645- (Nannochloropsis oceanica)
ATGACTATGAGCCTGACGACCCCACAAAGATCATCTCGAGGCAATAACGG
CAGCAACACCAACACCACCGCCACCAACAACACCAACAACAACACCTCCA
CCAACCACGACAACGACAACCACAACACCAACAGCAGCAATAGTGGCAAC
AACAGTTGCGGCGGCAGCGGCAGTGGGTCTTCCGGAGGGGGGGCAAAACG
GGCCAAGATGGACCACAGCATCGCAACTAATGGCCCCTCTCTGGCGATCG
GCACGACAACAACAGCTACAGCAGCAGCAGCAGCACTGTTGCCCACTCCG
TCTTCGTCCTCGAAAAAGCGCGGCGGGACAGCAGCAGTAGCAACAGCAGC
AGCAGCGGCGGCAGCAGCAGCAGCAGGAGGGGTAGTGAGAGGTCACCCAC
CACCCCATGTCGTGCCACCAGCCACAGCCTTGGCCGGCAGTGCTACTCCT
GGAGGGGGCGGAGTAGGACGAGGAGGAGGAGGGGGAGGGGAGGGGATCAT
GAGTAAGATGGTCTCGCCCACCCCACGGACCGTAACAAAGGCACGACCCT
CGCCCAGTAGCCGATATGATAGCTCTTTGGGATTGCTCACTAAAAAATTC
GTCGAACTTTTGCAAGGGCAGCAGGAAAGGGGGGATTCATTGGATTTAAA
TCAAGCGGCAATAAAGCTCTCGGTTCAAAAACGGCGAATTTATGATATTA
CGAACGTGTTGGAAGGGATCGGATTGATTGAGAAGAAGAGTAAGAATAAC
ATCGCATGGCGCGGAGCTGCTGCTTCGGCCTTGAGTACCAGCAGTGGTTG
CAACAGTAGCAGTGTCAATAGAGGGATTGAGGGGGAGGAGGAAGAGGAAG
GGGGAATTGAGGAAGGAGGGAACTGTGGGGAGGAGAAGAGGCAGTTGCAA
CGGGATATGGAGGAGCTTCGGCAGGAGGAGAAGGACCTAAAGGAGTATAT
TCAGAAGATGACGAAAATGATGCAAGACGAACAAGAACAGAACACCCGTC
TCATGTACGTCACTCAAGAAGACCTAGGGAAGCTCCCATGCTTCGAGCAT
CAAACCGTCATTGCGATTCGTGCTCCCCAGGGTACCACCTTGGAGGTGCC
TGATCCTGACGAGGGCATGCCGGAGGGAGATCGAAAATTCCAAGTGCAAC
TCAATTCGACCAATGGCCCTGTGGATATTTATTTGGTCACTACTCCGCCT
GCGGTAGAGGGAGGAGGGGGGGGCAAGTCGGAGGACTGGATGAGGGGCAA
GGTCAACAGCTGCAAGGAGATGGAGGGAAGGGGCCGATGA
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Synonyms
Publications