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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:751356..752645 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G02600.1 vs.
Match: EWM27092.1 (transcription factor e2fb [Nannochloropsis gaditana]) HSP 1 Score: 305.4 bits (781), Expect = 2.700e-79 Identity = 174/257 (67.70%), Postives = 201/257 (78.21%), Query Frame = 0
Query: 169 KMVSPTPRTVTKARPSPSSRYDSSLGLLTKKFVELLQGQQERGDSLDLNQAAIKLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTSSGCNSSSVNRGIEGEEEEEGGIEEGGNCGEEKRQLQRDMEELRQEEKDLKEYIQKMTKMMQDEQEQNTRLMYVTQEDLGKLPCFEHQTVIAIRAPQGTTLEVPDPDEGMPEGDRKFQVQLNSTNGPVDIYLVTTPPAVEGG------GGGKSEDWMRGKVN 420
KM SP +V+KAR SPSSRYDSSLGLLTKKFVELLQGQQ RGDSLDLNQAA+ LSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTS V+R EG E + RQL+++ME+L+QEE+D+K +IQ MT ++Q E EQNT LMYVTQEDLGKLPC++ QTVIAIRAPQGTTLEVPDPDEGM G+R++Q+QL S+NGPVDIYLV P EGG GGG++E RG+++
Sbjct: 7 KMTSPV--SVSKARASPSSRYDSSLGLLTKKFVELLQGQQARGDSLDLNQAAVTLSVQKRRIYDITNVLEGIGLIEKKSKNNIAWRGAAASALSTS-------VSRHGEGSVHSE-----------DMRQLKQEMEDLKQEERDVKGHIQSMTALLQQEGEQNTGLMYVTQEDLGKLPCYDAQTVIAIRAPQGTTLEVPDPDEGMANGERRYQIQLVSSNGPVDIYLVNAPEQGEGGEGGGGAGGGQAEASPRGRLD 243
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G02600.1 ID=NO07G02600.1|Name=NO07G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp ATGACTATGAGCCTGACGACCCCACAAAGATCATCTCGAGGCAATAACGG CAGCAACACCAACACCACCGCCACCAACAACACCAACAACAACACCTCCA CCAACCACGACAACGACAACCACAACACCAACAGCAGCAATAGTGGCAAC AACAGTTGCGGCGGCAGCGGCAGTGGGTCTTCCGGAGGGGGGGCAAAACG GGCCAAGATGGACCACAGCATCGCAACTAATGGCCCCTCTCTGGCGATCG GCACGACAACAACAGCTACAGCAGCAGCAGCAGCACTGTTGCCCACTCCG TCTTCGTCCTCGAAAAAGCGCGGCGGGACAGCAGCAGTAGCAACAGCAGC AGCAGCGGCGGCAGCAGCAGCAGCAGGAGGGGTAGTGAGAGGTCACCCAC CACCCCATGTCGTGCCACCAGCCACAGCCTTGGCCGGCAGTGCTACTCCT GGAGGGGGCGGAGTAGGACGAGGAGGAGGAGGGGGAGGGGAGGGGATCAT GAGTAAGATGGTCTCGCCCACCCCACGGACCGTAACAAAGGCACGACCCT CGCCCAGTAGCCGATATGATAGCTCTTTGGGATTGCTCACTAAAAAATTC GTCGAACTTTTGCAAGGGCAGCAGGAAAGGGGGGATTCATTGGATTTAAA TCAAGCGGCAATAAAGCTCTCGGTTCAAAAACGGCGAATTTATGATATTA CGAACGTGTTGGAAGGGATCGGATTGATTGAGAAGAAGAGTAAGAATAAC ATCGCATGGCGCGGAGCTGCTGCTTCGGCCTTGAGTACCAGCAGTGGTTG CAACAGTAGCAGTGTCAATAGAGGGATTGAGGGGGAGGAGGAAGAGGAAG GGGGAATTGAGGAAGGAGGGAACTGTGGGGAGGAGAAGAGGCAGTTGCAA CGGGATATGGAGGAGCTTCGGCAGGAGGAGAAGGACCTAAAGGAGTATAT TCAGAAGATGACGAAAATGATGCAAGACGAACAAGAACAGAACACCCGTC TCATGTACGTCACTCAAGAAGACCTAGGGAAGCTCCCATGCTTCGAGCAT CAAACCGTCATTGCGATTCGTGCTCCCCAGGGTACCACCTTGGAGGTGCC TGATCCTGACGAGGGCATGCCGGAGGGAGATCGAAAATTCCAAGTGCAAC TCAATTCGACCAATGGCCCTGTGGATATTTATTTGGTCACTACTCCGCCT GCGGTAGAGGGAGGAGGGGGGGGCAAGTCGGAGGACTGGATGAGGGGCAA GGTCAACAGCTGCAAGGAGATGGAGGGAAGGGGCCGATGA back to topprotein sequence of NO07G02600.1 >NO07G02600.1-protein ID=NO07G02600.1-protein|Name=NO07G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp MTMSLTTPQRSSRGNNGSNTNTTATNNTNNNTSTNHDNDNHNTNSSNSGN NSCGGSGSGSSGGGAKRAKMDHSIATNGPSLAIGTTTTATAAAAALLPTP SSSSKKRGGTAAVATAAAAAAAAAAGGVVRGHPPPHVVPPATALAGSATP GGGGVGRGGGGGGEGIMSKMVSPTPRTVTKARPSPSSRYDSSLGLLTKKF VELLQGQQERGDSLDLNQAAIKLSVQKRRIYDITNVLEGIGLIEKKSKNN IAWRGAAASALSTSSGCNSSSVNRGIEGEEEEEGGIEEGGNCGEEKRQLQ RDMEELRQEEKDLKEYIQKMTKMMQDEQEQNTRLMYVTQEDLGKLPCFEH QTVIAIRAPQGTTLEVPDPDEGMPEGDRKFQVQLNSTNGPVDIYLVTTPP AVEGGGGGKSEDWMRGKVNSCKEMEGRGR* back to topmRNA from alignment at chr7:751356..752645- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G02600.1 ID=NO07G02600.1|Name=NO07G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp|location=Sequence derived from alignment at chr7:751356..752645- (Nannochloropsis oceanica) ATGACTATGAGCCTGACGACCCCACAAAGATCATCTCGAGGCAATAACGG
CAGCAACACCAACACCACCGCCACCAACAACACCAACAACAACACCTCCA
CCAACCACGACAACGACAACCACAACACCAACAGCAGCAATAGTGGCAAC
AACAGTTGCGGCGGCAGCGGCAGTGGGTCTTCCGGAGGGGGGGCAAAACG
GGCCAAGATGGACCACAGCATCGCAACTAATGGCCCCTCTCTGGCGATCG
GCACGACAACAACAGCTACAGCAGCAGCAGCAGCACTGTTGCCCACTCCG
TCTTCGTCCTCGAAAAAGCGCGGCGGGACAGCAGCAGTAGCAACAGCAGC
AGCAGCGGCGGCAGCAGCAGCAGCAGGAGGGGTAGTGAGAGGTCACCCAC
CACCCCATGTCGTGCCACCAGCCACAGCCTTGGCCGGCAGTGCTACTCCT
GGAGGGGGCGGAGTAGGACGAGGAGGAGGAGGGGGAGGGGAGGGGATCAT
GAGTAAGATGGTCTCGCCCACCCCACGGACCGTAACAAAGGCACGACCCT
CGCCCAGTAGCCGATATGATAGCTCTTTGGGATTGCTCACTAAAAAATTC
GTCGAACTTTTGCAAGGGCAGCAGGAAAGGGGGGATTCATTGGATTTAAA
TCAAGCGGCAATAAAGCTCTCGGTTCAAAAACGGCGAATTTATGATATTA
CGAACGTGTTGGAAGGGATCGGATTGATTGAGAAGAAGAGTAAGAATAAC
ATCGCATGGCGCGGAGCTGCTGCTTCGGCCTTGAGTACCAGCAGTGGTTG
CAACAGTAGCAGTGTCAATAGAGGGATTGAGGGGGAGGAGGAAGAGGAAG
GGGGAATTGAGGAAGGAGGGAACTGTGGGGAGGAGAAGAGGCAGTTGCAA
CGGGATATGGAGGAGCTTCGGCAGGAGGAGAAGGACCTAAAGGAGTATAT
TCAGAAGATGACGAAAATGATGCAAGACGAACAAGAACAGAACACCCGTC
TCATGTACGTCACTCAAGAAGACCTAGGGAAGCTCCCATGCTTCGAGCAT
CAAACCGTCATTGCGATTCGTGCTCCCCAGGGTACCACCTTGGAGGTGCC
TGATCCTGACGAGGGCATGCCGGAGGGAGATCGAAAATTCCAAGTGCAAC
TCAATTCGACCAATGGCCCTGTGGATATTTATTTGGTCACTACTCCGCCT
GCGGTAGAGGGAGGAGGGGGGGGCAAGTCGGAGGACTGGATGAGGGGCAA
GGTCAACAGCTGCAAGGAGATGGAGGGAAGGGGCCGATGA back to topCoding sequence (CDS) from alignment at chr7:751356..752645- >NO07G02600.1 ID=NO07G02600.1|Name=NO07G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr7:751356..752645- (Nannochloropsis oceanica) ATGACTATGAGCCTGACGACCCCACAAAGATCATCTCGAGGCAATAACGG CAGCAACACCAACACCACCGCCACCAACAACACCAACAACAACACCTCCA CCAACCACGACAACGACAACCACAACACCAACAGCAGCAATAGTGGCAAC AACAGTTGCGGCGGCAGCGGCAGTGGGTCTTCCGGAGGGGGGGCAAAACG GGCCAAGATGGACCACAGCATCGCAACTAATGGCCCCTCTCTGGCGATCG GCACGACAACAACAGCTACAGCAGCAGCAGCAGCACTGTTGCCCACTCCG TCTTCGTCCTCGAAAAAGCGCGGCGGGACAGCAGCAGTAGCAACAGCAGC AGCAGCGGCGGCAGCAGCAGCAGCAGGAGGGGTAGTGAGAGGTCACCCAC CACCCCATGTCGTGCCACCAGCCACAGCCTTGGCCGGCAGTGCTACTCCT GGAGGGGGCGGAGTAGGACGAGGAGGAGGAGGGGGAGGGGAGGGGATCAT GAGTAAGATGGTCTCGCCCACCCCACGGACCGTAACAAAGGCACGACCCT CGCCCAGTAGCCGATATGATAGCTCTTTGGGATTGCTCACTAAAAAATTC GTCGAACTTTTGCAAGGGCAGCAGGAAAGGGGGGATTCATTGGATTTAAA TCAAGCGGCAATAAAGCTCTCGGTTCAAAAACGGCGAATTTATGATATTA CGAACGTGTTGGAAGGGATCGGATTGATTGAGAAGAAGAGTAAGAATAAC ATCGCATGGCGCGGAGCTGCTGCTTCGGCCTTGAGTACCAGCAGTGGTTG CAACAGTAGCAGTGTCAATAGAGGGATTGAGGGGGAGGAGGAAGAGGAAG GGGGAATTGAGGAAGGAGGGAACTGTGGGGAGGAGAAGAGGCAGTTGCAA CGGGATATGGAGGAGCTTCGGCAGGAGGAGAAGGACCTAAAGGAGTATAT TCAGAAGATGACGAAAATGATGCAAGACGAACAAGAACAGAACACCCGTC TCATGTACGTCACTCAAGAAGACCTAGGGAAGCTCCCATGCTTCGAGCAT CAAACCGTCATTGCGATTCGTGCTCCCCAGGGTACCACCTTGGAGGTGCC TGATCCTGACGAGGGCATGCCGGAGGGAGATCGAAAATTCCAAGTGCAAC TCAATTCGACCAATGGCCCTGTGGATATTTATTTGGTCACTACTCCGCCT GCGGTAGAGGGAGGAGGGGGGGGCAAGTCGGAGGACTGGATGAGGGGCAA GGTCAACAGCTGCAAGGAGATGGAGGGAAGGGGCCGATGA back to top
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