NO07G02500.1, NO07G02500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02500.1
Unique NameNO07G02500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1876
Alignment locationchr7:724810..726768 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:724810..726768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02500.1 vs.
Match: EWM27083.1 (histidyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 720.7 bits (1859), Expect = 3.700e-204
Identity = 383/529 (72.40%), Postives = 427/529 (80.72%), Query Frame = 0 
Query:   54 SSSQSVLVTIFLAAACAIFMKAATCLAWRCYGAAAGRRASVSEV-PLLSRRLPSSASLVRVRSLGHQTLMASDAADGGRASAAVKQDSNKRADKKGTSQPQKAKLDLQPPRGTRDFYPEEMRLRNWLFGHWRQVAREHGFEEYDAPVLESEALYVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVLPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGISGVEAEAELLAAIVSFFARVGLTANDVGIKVNSRGVLTEVLAALGVPEENFAATCVLVDKLEKIPLSAIQDDLTALGLEESVVLRLLEVIQSKDVEGLEKAIGKDSAALGQLRQLFEYARAYGFDDWLVLDASVVRGLAYYTGVVFEAFDRQGELRAICGGGRYDKLLEAFGGEALPAVGFGFGDAVIIELLESKKLVPALPLRLDASVFAMETGLQTTAIAAATSLRSAGLMVDLQLEARKTKWAFKHADRLGATYVVLVGAGEAAEGKVKVKHMATGQQETLPVVDLGNWMLA 582
            SS+++   T  LA  C + MK  TC AW   G  A  R  +S + PLL R+          +S  H ++ A+ AA+G R SAAV QD   R     T + ++ KLDL PPRGTRDFYPE+MR R+WLF  WRQVAR+H FEEYDAPVLESE L+VRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLV+PVKWFSFPQCWRYERMTRGRRREHYQWNMDVWG+SGVEAEAELL+AI +FF RVGLTA DVGIKV+SRGVL EVLAAL VP+  F+ATCVLVDKLEK+PL AIQ DLTALGLEESVV RLL+V+QS+D   LE AIG  S AL QLRQLFEYARAY F++WLVLDASVVRGLAYYTG+VFEAFDR+GELRAICGGGRYDKLLE FGGEALPAVGFGFGDAVI+ELLESK LVP+L L LDA VFAME GLQ  AI AATSLR+AGL VDLQLEARKTKWA KHADRLGATYVV+VG  E A   V+VK MATGQQ  + + +L +W+ A
Sbjct:   11 SSTRTQDFTTLLAVFC-VLMKVTTCRAWHYSGRIATSRQMLSGIGPLLRRKSFIIHPATSTKSRQHISITANAAAEGSRGSAAVAQDLKNRE----TQKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDKLEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALAQLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICGGGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSLSLGLDALVFAMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVIVGPEEVAGCNVRVKEMATGQQHVVAIANLESWISA 534
The following BLAST results are available for this feature:
BLAST of NO07G02500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27083.13.700e-20472.40histidyl-trna synthetase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02500NO07G02500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02500.1NO07G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02500.1.cds1NO07G02500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02500.1.cds2NO07G02500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02500.1 ID=NO07G02500.1|Name=NO07G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1876bp
AGCAGGATTCAATTGTGTATTTTTATGTTTACTCACTTTTAATGAGAAGT
CAGGCTTACACTCTCACAAACACGTTCTTTCGGCTTGCGCACAGGTGTCT
TTTTGTCGGGTTGGGCGCCTTTTGTGTGGTGCAACCTGTCCACAAGCCCC
TCATCTCCTTTCTGCTTCCCATGACCAAACGCGTGCGTGGTGCCTCTAGC
AGCAGTAGCCAGAGCGTCCTTGTCACCATCTTCTTGGCTGCGGCCTGCGC
TATTTTCATGAAGGCCGCAACATGCCTAGCCTGGAGGTGTTATGGCGCGG
CGGCGGGCAGAAGAGCCTCGGTGTCCGAAGTCCCCCTTTTGTCACGCCGT
CTCCCCTCCTCCGCTAGCCTCGTCAGGGTCAGAAGCCTTGGGCACCAGAC
CCTTATGGCGTCAGATGCCGCAGATGGCGGACGCGCTAGTGCTGCTGTCA
AACAGGACTCTAATAAGAGAGCCGACAAGAAAGGCACAAGCCAACCACAG
AAGGCCAAGCTCGACCTCCAACCTCCCCGGGGCACGCGAGACTTCTATCC
CGAAGAAATGCGCCTGCGCAATTGGCTCTTTGGACATTGGCGGCAAGTGG
CAAGGGAGCATGGCTTTGAGGAATATGATGCCCCTGTGCTTGAATCAGAA
GCTCTATATGTCCGCAAGGCCGGGGAGGAAGTGACAGAACAACTCTACAA
TTTTGAGGATAAGGGAGGGCGGCGTGTGGCTTTACGTCCGGAGATGACCC
CGTCGTTGGCACGGATGGTGATGGCGAAGAGGAACGGGCTAGTCTTGCCT
GTCAAGTGGTTTTCGTTTCCCCAGTGCTGGCGGTATGAACGCATGACCAG
AGGTCGTCGTCGCGAGCATTACCAATGGAACATGGACGTGTGGGGCATAT
CAGGAGTGGAAGCTGAAGCAGAGCTTCTTGCTGCAATTGTCAGCTTCTTT
GCGCGCGTAGGACTCACGGCAAATGATGTGGGAATTAAGGTGAATAGCCG
AGGAGTGTTGACAGAGGTCCTTGCTGCTTTAGGTGTACCAGAGGAGAATT
TTGCAGCTACCTGTGTGTTGGTCGATAAATTGGAGAAGATACCGTTAAGT
GCGATTCAGGACGATTTGACGGCATTGGGCTTGGAGGAGTCAGTAGTGCT
CCGGTTGCTAGAGGTGATCCAAAGTAAGGATGTGGAGGGCTTAGAAAAGG
CGATTGGCAAGGATTCGGCGGCCTTGGGTCAGCTTAGACAATTATTTGAA
TATGCACGCGCGTATGGATTCGATGATTGGTTGGTGCTAGATGCGAGCGT
GGTGAGGGGCTTGGCGTACTATACTGGGGTGGTGTTCGAGGCCTTTGATC
GACAGGGGGAACTGAGGGCAATATGTGGGGGAGGAAGGTATGATAAATTG
TTGGAAGCTTTCGGAGGGGAGGCGCTGCCAGCCGTAGGGTTTGGATTTGG
TGACGCGGTGATCATAGAATTGCTTGAGAGTAAGAAGCTAGTGCCCGCGT
TGCCGCTAAGGTTGGATGCGTCGGTGTTTGCGATGGAGACGGGGTTGCAG
ACGACGGCGATTGCGGCGGCCACGTCGTTAAGGAGTGCGGGGCTGATGGT
TGACCTGCAGTTGGAGGCGCGCAAGACTAAGTGGGCATTTAAGCATGCCG
ATCGTCTAGGTGCGACATATGTGGTGTTGGTGGGGGCGGGAGAGGCGGCG
GAGGGCAAGGTAAAGGTGAAGCACATGGCCACTGGGCAGCAAGAAACGTT
GCCTGTCGTGGACCTTGGTAATTGGATGTTGGCAGCTTCGGCGGCCTCAG
CAGGTGTGATGCACCCATAATGACAAGAATCTCTATAATTTATGAATGCA
ACAAGGAAAAAGAGACGTTCATGCTG
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protein sequence of NO07G02500.1

>NO07G02500.1-protein ID=NO07G02500.1-protein|Name=NO07G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=593bp
MRSQAYTLTNTFFRLAHRCLFVGLGAFCVVQPVHKPLISFLLPMTKRVRG
ASSSSSQSVLVTIFLAAACAIFMKAATCLAWRCYGAAAGRRASVSEVPLL
SRRLPSSASLVRVRSLGHQTLMASDAADGGRASAAVKQDSNKRADKKGTS
QPQKAKLDLQPPRGTRDFYPEEMRLRNWLFGHWRQVAREHGFEEYDAPVL
ESEALYVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGL
VLPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGISGVEAEAELLAAIV
SFFARVGLTANDVGIKVNSRGVLTEVLAALGVPEENFAATCVLVDKLEKI
PLSAIQDDLTALGLEESVVLRLLEVIQSKDVEGLEKAIGKDSAALGQLRQ
LFEYARAYGFDDWLVLDASVVRGLAYYTGVVFEAFDRQGELRAICGGGRY
DKLLEAFGGEALPAVGFGFGDAVIIELLESKKLVPALPLRLDASVFAMET
GLQTTAIAAATSLRSAGLMVDLQLEARKTKWAFKHADRLGATYVVLVGAG
EAAEGKVKVKHMATGQQETLPVVDLGNWMLAASAASAGVMHP*
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mRNA from alignment at chr7:724810..726768-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02500.1 ID=NO07G02500.1|Name=NO07G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1959bp|location=Sequence derived from alignment at chr7:724810..726768- (Nannochloropsis oceanica)
AGCAGGATTCAATTGTGTATTTTTATGTTTACTCACTTTTAATGAGAAGT
CAGGCTTACACTCTCACAAACACGTTCTTTCGGCTTGCGCACAGGTGTCT
TTTTGTCGGGTTGGGCGCCTTTTGTGTGGTGCAACCTGTCCACAAGCCCC
TCATCTCCTTTCTGCTTCCCATGACCAAACGCGTGCGTGGTGCCTCTAGC
AGCAGTAGCCAGAGCGTCCTTGTCACCATCTTCTTGGCTGCGGCCTGCGC
TATTTTCATGAAGGCCGCAACATGCCTAGCCTGGAGGTGTTATGGCGCGG
CGGCGGGCAGAAGAGCCTCGGTGTCCGAAGTCCCCCTTTTGTCACGCCGT
CTCCCCTCCTCCGCTAGCCTCGTCAGGGTCAGAAGCCTTGGGCACCAGAC
CCTTATGGCGTCAGATGCCGCAGATGGCGGACGCGCTAGTGCTGCTGTCA
AACAGGACTCTAATAAGAGGTGCGTCTTGAGGATGGCAGGAGGGGAAACG
AAAATGCGTGCGTCTTACTGACTCCTTTTAACCAAATCTCAACCCACCGC
AGAGCCGACAAGAAAGGCACAAGCCAACCACAGAAGGCCAAGCTCGACCT
CCAACCTCCCCGGGGCACGCGAGACTTCTATCCCGAAGAAATGCGCCTGC
GCAATTGGCTCTTTGGACATTGGCGGCAAGTGGCAAGGGAGCATGGCTTT
GAGGAATATGATGCCCCTGTGCTTGAATCAGAAGCTCTATATGTCCGCAA
GGCCGGGGAGGAAGTGACAGAACAACTCTACAATTTTGAGGATAAGGGAG
GGCGGCGTGTGGCTTTACGTCCGGAGATGACCCCGTCGTTGGCACGGATG
GTGATGGCGAAGAGGAACGGGCTAGTCTTGCCTGTCAAGTGGTTTTCGTT
TCCCCAGTGCTGGCGGTATGAACGCATGACCAGAGGTCGTCGTCGCGAGC
ATTACCAATGGAACATGGACGTGTGGGGCATATCAGGAGTGGAAGCTGAA
GCAGAGCTTCTTGCTGCAATTGTCAGCTTCTTTGCGCGCGTAGGACTCAC
GGCAAATGATGTGGGAATTAAGGTGAATAGCCGAGGAGTGTTGACAGAGG
TCCTTGCTGCTTTAGGTGTACCAGAGGAGAATTTTGCAGCTACCTGTGTG
TTGGTCGATAAATTGGAGAAGATACCGTTAAGTGCGATTCAGGACGATTT
GACGGCATTGGGCTTGGAGGAGTCAGTAGTGCTCCGGTTGCTAGAGGTGA
TCCAAAGTAAGGATGTGGAGGGCTTAGAAAAGGCGATTGGCAAGGATTCG
GCGGCCTTGGGTCAGCTTAGACAATTATTTGAATATGCACGCGCGTATGG
ATTCGATGATTGGTTGGTGCTAGATGCGAGCGTGGTGAGGGGCTTGGCGT
ACTATACTGGGGTGGTGTTCGAGGCCTTTGATCGACAGGGGGAACTGAGG
GCAATATGTGGGGGAGGAAGGTATGATAAATTGTTGGAAGCTTTCGGAGG
GGAGGCGCTGCCAGCCGTAGGGTTTGGATTTGGTGACGCGGTGATCATAG
AATTGCTTGAGAGTAAGAAGCTAGTGCCCGCGTTGCCGCTAAGGTTGGAT
GCGTCGGTGTTTGCGATGGAGACGGGGTTGCAGACGACGGCGATTGCGGC
GGCCACGTCGTTAAGGAGTGCGGGGCTGATGGTTGACCTGCAGTTGGAGG
CGCGCAAGACTAAGTGGGCATTTAAGCATGCCGATCGTCTAGGTGCGACA
TATGTGGTGTTGGTGGGGGCGGGAGAGGCGGCGGAGGGCAAGGTAAAGGT
GAAGCACATGGCCACTGGGCAGCAAGAAACGTTGCCTGTCGTGGACCTTG
GTAATTGGATGTTGGCAGCTTCGGCGGCCTCAGCAGGTGTGATGCACCCA
TAATGACAAGAATCTCTATAATTTATGAATGCAACAAGGAAAAAGAGACG
TTCATGCTG
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Coding sequence (CDS) from alignment at chr7:724810..726768-

>NO07G02500.1 ID=NO07G02500.1|Name=NO07G02500.1|organism=Nannochloropsis oceanica|type=CDS|length=1779bp|location=Sequence derived from alignment at chr7:724810..726768- (Nannochloropsis oceanica)
ATGAGAAGTCAGGCTTACACTCTCACAAACACGTTCTTTCGGCTTGCGCA
CAGGTGTCTTTTTGTCGGGTTGGGCGCCTTTTGTGTGGTGCAACCTGTCC
ACAAGCCCCTCATCTCCTTTCTGCTTCCCATGACCAAACGCGTGCGTGGT
GCCTCTAGCAGCAGTAGCCAGAGCGTCCTTGTCACCATCTTCTTGGCTGC
GGCCTGCGCTATTTTCATGAAGGCCGCAACATGCCTAGCCTGGAGGTGTT
ATGGCGCGGCGGCGGGCAGAAGAGCCTCGGTGTCCGAAGTCCCCCTTTTG
TCACGCCGTCTCCCCTCCTCCGCTAGCCTCGTCAGGGTCAGAAGCCTTGG
GCACCAGACCCTTATGGCGTCAGATGCCGCAGATGGCGGACGCGCTAGTG
CTGCTGTCAAACAGGACTCTAATAAGAGAGCCGACAAGAAAGGCACAAGC
CAACCACAGAAGGCCAAGCTCGACCTCCAACCTCCCCGGGGCACGCGAGA
CTTCTATCCCGAAGAAATGCGCCTGCGCAATTGGCTCTTTGGACATTGGC
GGCAAGTGGCAAGGGAGCATGGCTTTGAGGAATATGATGCCCCTGTGCTT
GAATCAGAAGCTCTATATGTCCGCAAGGCCGGGGAGGAAGTGACAGAACA
ACTCTACAATTTTGAGGATAAGGGAGGGCGGCGTGTGGCTTTACGTCCGG
AGATGACCCCGTCGTTGGCACGGATGGTGATGGCGAAGAGGAACGGGCTA
GTCTTGCCTGTCAAGTGGTTTTCGTTTCCCCAGTGCTGGCGGTATGAACG
CATGACCAGAGGTCGTCGTCGCGAGCATTACCAATGGAACATGGACGTGT
GGGGCATATCAGGAGTGGAAGCTGAAGCAGAGCTTCTTGCTGCAATTGTC
AGCTTCTTTGCGCGCGTAGGACTCACGGCAAATGATGTGGGAATTAAGGT
GAATAGCCGAGGAGTGTTGACAGAGGTCCTTGCTGCTTTAGGTGTACCAG
AGGAGAATTTTGCAGCTACCTGTGTGTTGGTCGATAAATTGGAGAAGATA
CCGTTAAGTGCGATTCAGGACGATTTGACGGCATTGGGCTTGGAGGAGTC
AGTAGTGCTCCGGTTGCTAGAGGTGATCCAAAGTAAGGATGTGGAGGGCT
TAGAAAAGGCGATTGGCAAGGATTCGGCGGCCTTGGGTCAGCTTAGACAA
TTATTTGAATATGCACGCGCGTATGGATTCGATGATTGGTTGGTGCTAGA
TGCGAGCGTGGTGAGGGGCTTGGCGTACTATACTGGGGTGGTGTTCGAGG
CCTTTGATCGACAGGGGGAACTGAGGGCAATATGTGGGGGAGGAAGGTAT
GATAAATTGTTGGAAGCTTTCGGAGGGGAGGCGCTGCCAGCCGTAGGGTT
TGGATTTGGTGACGCGGTGATCATAGAATTGCTTGAGAGTAAGAAGCTAG
TGCCCGCGTTGCCGCTAAGGTTGGATGCGTCGGTGTTTGCGATGGAGACG
GGGTTGCAGACGACGGCGATTGCGGCGGCCACGTCGTTAAGGAGTGCGGG
GCTGATGGTTGACCTGCAGTTGGAGGCGCGCAAGACTAAGTGGGCATTTA
AGCATGCCGATCGTCTAGGTGCGACATATGTGGTGTTGGTGGGGGCGGGA
GAGGCGGCGGAGGGCAAGGTAAAGGTGAAGCACATGGCCACTGGGCAGCA
AGAAACGTTGCCTGTCGTGGACCTTGGTAATTGGATGTTGGCAGCTTCGG
CGGCCTCAGCAGGTGTGATGCACCCATAA
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Synonyms
Publications