NO07G02480.3, NO07G02480.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02480.3
Unique NameNO07G02480.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1785
Alignment locationchr7:717033..718986 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:717033..718986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02480.3 vs.
Match: EWM27130.1 (Protein of unknown function DUF829, TMEM53 [Nannochloropsis gaditana])

HSP 1 Score: 417.9 bits (1073), Expect = 2.900e-113
Identity = 196/309 (63.43%), Postives = 239/309 (77.35%), Query Frame = 0 
Query:   23 DAAVPFNDGPNVGRFRVTKRAALRIVPVPAEGETPRAIESRD--KVKLVVVLLGWLGCQDRHLKKYAEMYHESMNCEVVLRHTVPASRLLRRKQWGAVRAAEEIMTLIPLFFPDAKVVVHYFSNGGCFVHRRMLLLQNGHYRQGDARRFCCDPEPPTDDYQFPQLAGTIFDSCPVAADAEAGARAVSARVQSPIIRLLMYATIRFGLEIYGIAQSWRYEQKYIEHIENDHTLVPSLYIFSEDDTITDPALVERVVAKRKAYLTSQGLPADVMLETWKITDPSLHVCHYARYPIEYQKKIKDFLQRQGLI 330
            D    F DGP++GRFRVTK   L I P   E     + E  +  KVK VV+L GWL CQD+HL+KYA +YHE   C+VVLR+TVPA  +LRRKQ   VR AE+IM+LIPLFFP AKV+VHYFSNGGCFVHRR+LLL NGHYRQ  +RRFCCD  PP +++ F QLA TIFDSCP AADA+ GA+A+SA +++P  RL  Y TIRFGLE+YG+AQ WRYE+KY+EHIENDH L+PSLYI+S+DDTITD ALVER+V KRKAY TSQG+ ADVM+ TWK+++PS HVCHYA +P  Y+ ++  FLQ  GL+
Sbjct:    2 DEDAVFEDGPSIGRFRVTKLKGLNICPAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQR-SRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQAHGLL 309
The following BLAST results are available for this feature:
BLAST of NO07G02480.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27130.12.900e-11363.43Protein of unknown function DUF829, TMEM53 [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02480NO07G02480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02480.3NO07G02480.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02480.3.cds1NO07G02480.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02480.3.cds2NO07G02480.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02480.3 ID=NO07G02480.3|Name=NO07G02480.3|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp
CTATCACCTGCAAGCCTGGAATTTAGCCCCTGATGTTGTTCCGGCAAGTA
AAGTACGTTCATCCTCCAACTCACACGTATTGTATAATCACGAACCGGTA
CGCCGCCCACCAGCAGATGCAAGAACACGACGCAATATCGGTCGATTCCG
GCAAAATCCATGATGACGACAGCCGCAGGCTTATCCCTCCCAAACTTCTT
GTCTCCACAATGCTGTCATCAGCCGGTACCAGCACTTATTCCAAGGTAGC
AGCGACAGCAGCTGACAGCAGCGCGCCGAGCTCTGTGGACCAATTGATGC
ACAGTCGATCTTTTATTTCCCACTCAGGGGTTCCAATGTTCGTGGATGGG
ATAGGTGAGTGCCAGCTCAAAGTCAAGCTCCCTTTCAATGCAATACACGT
CTCAATCATGTCAGGGCTTGCGTCATTCCATCCTCCCGGATCTCGCACTG
CGCCGACTTACTATCAATCCTTATCGCCCGAGCTCGTAGACGAAATCAAC
GGCATCCTTCCTTGCCCAAATCTCCCCGTGCATTTTTATCGATCCACCCG
CCATCTTCACAATTCCGTTCTGTCTCCCCCCAGACGACATTGAGAAGATG
GAAAAGCTCGCCGACTTGGATGCTAACAATTCTTGCCTCACGATCCCCGC
GACACGTTTTCCGGACGCGGCCGTGCCGTTCAATGACGGTCCTAATGTGG
GCCGCTTCCGTGTCACGAAGCGTGCGGCCTTAAGAATCGTACCTGTGCCT
GCAGAAGGGGAGACACCACGCGCCATAGAGAGCCGTGACAAGGTCAAGCT
TGTGGTGGTCTTGCTGGGGTGGTTGGGCTGCCAAGACAGGCATTTGAAAA
AATATGCGGAGATGTATCATGAGAGTATGAACTGCGAGGTGGTGTTGCGG
CACACGGTCCCCGCGAGCAGGCTGCTGCGTCGGAAGCAATGGGGAGCCGT
CCGAGCTGCCGAGGAGATAATGACATTGATCCCTCTCTTTTTCCCCGATG
CCAAAGTGGTCGTGCATTATTTTTCAAATGGTGGCTGTTTTGTACATCGT
AGAATGCTGTTACTGCAGAACGGGCATTATCGCCAGGGAGATGCAAGGCG
GTTCTGCTGTGATCCTGAACCACCCACGGACGACTACCAGTTCCCTCAGC
TTGCAGGCACAATTTTTGATAGCTGCCCTGTCGCCGCGGATGCCGAGGCT
GGGGCCAGGGCCGTAAGCGCACGTGTGCAGTCGCCGATTATCCGCTTGCT
CATGTACGCGACTATTCGCTTCGGGCTTGAGATTTACGGGATCGCACAAT
CATGGCGTTATGAGCAGAAATATATCGAGCACATTGAAAATGATCATACC
CTCGTTCCCAGCCTCTATATCTTTTCGGAAGACGACACCATTACTGACCC
TGCTTTGGTTGAAAGAGTGGTGGCCAAGCGGAAGGCCTACCTTACCTCTC
AAGGTTTGCCCGCTGATGTCATGCTCGAGACATGGAAGATCACAGATCCT
TCACTTCATGTTTGTCATTACGCGCGTTATCCGATAGAGTACCAAAAAAA
AATAAAAGATTTTCTGCAGAGACAAGGCCTAATCCCTTGAAGAGCGTAGA
TGAAGGATTCAGAATGCTGCCAATAGTTCAGCAGTGAATGCCTTGCCCTC
CAATTGTAGACAAAGTAAATCACATTCGGTGCCTTTTTTAATTAAAGCGG
CGATTGAAGCGCTCGATCGAGTGAACGTCTTCGATAAGCAAGCTTGATGG
ATCGAAGAAAATTGGTTCATGCCCGTCGTTCCTTT
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protein sequence of NO07G02480.3

>NO07G02480.3-protein ID=NO07G02480.3-protein|Name=NO07G02480.3|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MEKLADLDANNSCLTIPATRFPDAAVPFNDGPNVGRFRVTKRAALRIVPV
PAEGETPRAIESRDKVKLVVVLLGWLGCQDRHLKKYAEMYHESMNCEVVL
RHTVPASRLLRRKQWGAVRAAEEIMTLIPLFFPDAKVVVHYFSNGGCFVH
RRMLLLQNGHYRQGDARRFCCDPEPPTDDYQFPQLAGTIFDSCPVAADAE
AGARAVSARVQSPIIRLLMYATIRFGLEIYGIAQSWRYEQKYIEHIENDH
TLVPSLYIFSEDDTITDPALVERVVAKRKAYLTSQGLPADVMLETWKITD
PSLHVCHYARYPIEYQKKIKDFLQRQGLIP*
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mRNA from alignment at chr7:717033..718986+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02480.3 ID=NO07G02480.3|Name=NO07G02480.3|organism=Nannochloropsis oceanica|type=mRNA|length=1954bp|location=Sequence derived from alignment at chr7:717033..718986+ (Nannochloropsis oceanica)
CTATCACCTGCAAGCCTGGAATTTAGCCCCTGATGTTGTTCCGGCAAGTA
AAGTACGTTCATCCTCCAACTCACACGTATTGTATAATCACGAACCGGTA
CGCCGCCCACCAGCAGATGCAAGAACACGACGCAATATCGGTCGATTCCG
GCAAAATCCATGATGACGACAGCCGCAGGCTTATCCCTCCCAAACTTCTT
GTCTCCACAATGCTGTCATCAGCCGGTACCAGCACTTATTCCAAGGTAGC
AGCGACAGCAGCTGACAGCAGCGCGCCGAGCTCTGTGGACCAATTGATGC
ACAGTCGATCTTTTATTTCCCACTCAGGGGTTCCAATGTTCGTGGATGGG
ATAGGTGAGTGCCAGCTCAAAGTCAAGCTCCCTTTCAATGCAATACACGT
CTCAATCATGTCAGGGCTTGCGTCATTCCATCCTCCCGGATCTCGCACTG
CGCCGACTTACTATCAATCCTTATCGCCCGAGCTCGTAGACGAAATCAAC
GGCATCCTTCCTTGCCCAAATCTCCCCGTGCATTTTTATCGATCCACCCG
CCATCTTCACAATTCCGTTCTGTCTCCCCCCAGACGACATTGAGAAGATG
GAAAAGCTCGCCGACTTGGATGCTAACAATTCTTGCCTCACGATCCCCGC
GACACGTTTTCCGGACGCGGCCGTGCCGTTCAATGACGGTCCTAATGTGG
GCCGCTTCCGTGTCACGAAGCGTGCGGCCTTAAGAATCGTACCTGTGCCT
GCAGAAGGGGAGACACCACGCGCCATAGAGAGCCGTGACAAGGTCAAGCT
TGTGGTGGTCTTGCTGGGGTGGTTGGGCTGCCAAGACAGGCATTTGAAAA
AATATGCGGAGATGTATCATGAGAGTATGAACTGCGAGGTGGTGTTGCGG
CACACGGTCCCCGCGAGCAGGCTGCTGCGTCGGAAGCAATGGGGAGCCGT
CCGAGCTGCCGAGGAGATAATGACATTGATCCCTCTCTTTTTCCCCGATG
CCAAAGTGGTCGTGCATTATTTTTCAAATGGTGGCTGTTTTGTACATCGT
AGAATGCTGTTACTGCAGAACGGGCATTATCGCCAGGGAGATGCAAGGCG
GTTCTGCTGTGATCCTGAACCACCCACGGACGACTACCAGTTCCCTCAGC
TTGCAGGCACAATTTTTGATAGCTGCCCTGTCGCCGCGGATGCCGAGGCT
GGGGCCAGGGCCGTAAGCGCACGTGTGCAGGTGTGTAACTTGGTTTGGAA
TGCGGGAGGGGGGAAGGGGTTGAATAAATAGAGAGAAAGGAGGGGGTTGA
ACGATTAGACGGGGATGAAGAGTGAAGCCTTCGGAGGCAGTGACGAAATT
TGTTTCAACTCACTTCTGTCACCTCGAATGGTTGCGTACTCCTTTTCAGT
CGCCGATTATCCGCTTGCTCATGTACGCGACTATTCGCTTCGGGCTTGAG
ATTTACGGGATCGCACAATCATGGCGTTATGAGCAGAAATATATCGAGCA
CATTGAAAATGATCATACCCTCGTTCCCAGCCTCTATATCTTTTCGGAAG
ACGACACCATTACTGACCCTGCTTTGGTTGAAAGAGTGGTGGCCAAGCGG
AAGGCCTACCTTACCTCTCAAGGTTTGCCCGCTGATGTCATGCTCGAGAC
ATGGAAGATCACAGATCCTTCACTTCATGTTTGTCATTACGCGCGTTATC
CGATAGAGTACCAAAAAAAAATAAAAGATTTTCTGCAGAGACAAGGCCTA
ATCCCTTGAAGAGCGTAGATGAAGGATTCAGAATGCTGCCAATAGTTCAG
CAGTGAATGCCTTGCCCTCCAATTGTAGACAAAGTAAATCACATTCGGTG
CCTTTTTTAATTAAAGCGGCGATTGAAGCGCTCGATCGAGTGAACGTCTT
CGATAAGCAAGCTTGATGGATCGAAGAAAATTGGTTCATGCCCGTCGTTC
CTTT
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Coding sequence (CDS) from alignment at chr7:717033..718986+

>NO07G02480.3 ID=NO07G02480.3|Name=NO07G02480.3|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at chr7:717033..718986+ (Nannochloropsis oceanica)
ATGGAAAAGCTCGCCGACTTGGATGCTAACAATTCTTGCCTCACGATCCC
CGCGACACGTTTTCCGGACGCGGCCGTGCCGTTCAATGACGGTCCTAATG
TGGGCCGCTTCCGTGTCACGAAGCGTGCGGCCTTAAGAATCGTACCTGTG
CCTGCAGAAGGGGAGACACCACGCGCCATAGAGAGCCGTGACAAGGTCAA
GCTTGTGGTGGTCTTGCTGGGGTGGTTGGGCTGCCAAGACAGGCATTTGA
AAAAATATGCGGAGATGTATCATGAGAGTATGAACTGCGAGGTGGTGTTG
CGGCACACGGTCCCCGCGAGCAGGCTGCTGCGTCGGAAGCAATGGGGAGC
CGTCCGAGCTGCCGAGGAGATAATGACATTGATCCCTCTCTTTTTCCCCG
ATGCCAAAGTGGTCGTGCATTATTTTTCAAATGGTGGCTGTTTTGTACAT
CGTAGAATGCTGTTACTGCAGAACGGGCATTATCGCCAGGGAGATGCAAG
GCGGTTCTGCTGTGATCCTGAACCACCCACGGACGACTACCAGTTCCCTC
AGCTTGCAGGCACAATTTTTGATAGCTGCCCTGTCGCCGCGGATGCCGAG
GCTGGGGCCAGGGCCGTAAGCGCACGTGTGCAGTCGCCGATTATCCGCTT
GCTCATGTACGCGACTATTCGCTTCGGGCTTGAGATTTACGGGATCGCAC
AATCATGGCGTTATGAGCAGAAATATATCGAGCACATTGAAAATGATCAT
ACCCTCGTTCCCAGCCTCTATATCTTTTCGGAAGACGACACCATTACTGA
CCCTGCTTTGGTTGAAAGAGTGGTGGCCAAGCGGAAGGCCTACCTTACCT
CTCAAGGTTTGCCCGCTGATGTCATGCTCGAGACATGGAAGATCACAGAT
CCTTCACTTCATGTTTGTCATTACGCGCGTTATCCGATAGAGTACCAAAA
AAAAATAAAAGATTTTCTGCAGAGACAAGGCCTAATCCCTTGA
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Synonyms
Publications