NO07G02460.1, NO07G02460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02460.1
Unique NameNO07G02460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1972
Alignment locationchr7:711764..713735 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:711764..713735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02460.1 vs.
Match: EWM27129.1 (hypothetical protein Naga_100419g2 [Nannochloropsis gaditana])

HSP 1 Score: 811.2 bits (2094), Expect = 2.100e-231
Identity = 413/565 (73.10%), Postives = 472/565 (83.54%), Query Frame = 0 
Query:   10 VARLLGAAASSLLFVSSTSAQSFPGCSSADMRQLTFVGRGLMGCFSLSLSEVFMFMGGMSADQDAWLERCSQSSEDYQSECFQLLESFLQQAASQPGSLPAKVVSNVYKNPPQVLDCVAQINNQVETFSPTCKDGAMLGQITRASARLAPYIDSIQPWRLPPQIQGCAVNDLLNLQLAYLPFIDCLNFNFTQLAEGFTTSSGPGMGAQLEDATIRAGISCLYDPHMSNADCMYLVVVASTKLQGGSWSDMGVYAMRALTDYPQACQCVRGASQSAAFSAVATSCPAHDTLNFLTALEASCAFEPQIQSSLSKALNGCSDADVVRTELVGLQVLDCMEANGGDLAGSTDVLTEARVAQIANCVNKPGYDNAECLGLLGSLARIAADEPDSLEAQVVEKMTKDGAAFCGCLDRAARSPPAKDLSPTCEVPYSGIKFLQDNKKYCEAIAAVPPSFWTAAAAGIAAAAKAPLSSETVPKAGEKPTETPVTEEVELGPTGPKHLPQKSDSGFWDHLPAFSSASFMSQSSESDEGGKDVETGRRLEHGGDDKLRLVGGAKAELVGEHPHLR 575
            VA +  AAA SLL  SSTSAQ+FPGCSS DMRQLT+VGRGLM CFSLSL EVFMFMGG+S+DQ  WL+RCS+SS+ YQ+ECFQLLES LQQAASQPGS+PAKVV  +Y+NPP+VL+CVA++NNQV +FSPTC DG  LGQITR+SARLAPY++SI+PW LPPQ++GCAVNDLLNLQLAYLPFIDCLNFNFTQL EGF +SS P MGAQLEDATIRAGISCLYDPHM+N+DCMYLV++A+TKLQGGSWSDMGVYAMRALTDYPQACQCVRGASQSAA+ AV+TSCPAHD+LNFLTALEASCAFEPQIQSSLSKALNGCSDADVVR ELVGLQ+LDCM A+GGDLAGSTD LTEAR+AQIANCVN PGY+NAECLGLLGSLARIAAD PDSLEA++V++MT DG+ FC CLDRAA SPPA DL   CEVP+SG+ FL++NKKYCEAIAAVPP+FW  AAAGI AAA APLS+ET        +  P  + VE+ P+       K     W +LP  SS+  +S  S+S+   + +   RRLE G D K RLVG  KAE+V    HLR
Sbjct:   38 VAHITFAAAMSLLLASSTSAQTFPGCSSTDMRQLTWVGRGLMNCFSLSLGEVFMFMGGLSSDQSIWLDRCSESSDQYQNECFQLLESILQQAASQPGSVPAKVVGVIYQNPPEVLNCVAEVNNQVGSFSPTCTDGVSLGQITRSSARLAPYVNSIKPWHLPPQMEGCAVNDLLNLQLAYLPFIDCLNFNFTQLIEGFGSSS-PNMGAQLEDATIRAGISCLYDPHMTNSDCMYLVILATTKLQGGSWSDMGVYAMRALTDYPQACQCVRGASQSAAYQAVSTSCPAHDSLNFLTALEASCAFEPQIQSSLSKALNGCSDADVVRAELVGLQILDCMGADGGDLAGSTDELTEARIAQIANCVNDPGYENAECLGLLGSLARIAADAPDSLEAKLVDEMTTDGSEFCACLDRAAHSPPANDLGAVCEVPFSGVDFLRENKKYCEAIAAVPPAFWATAAAGIVAAANAPLSTETA--TVHSVSTRPGQDTVEISPSSSHR--GKDKGNLWGYLP--SSSGVLSYFSDSEATNEQI---RRLEEGKDGKFRLVGKPKAEIVEGQMHLR 592
The following BLAST results are available for this feature:
BLAST of NO07G02460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27129.12.100e-23173.10hypothetical protein Naga_100419g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02460NO07G02460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02460.1NO07G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02460.1.cds1NO07G02460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02460.1 ID=NO07G02460.1|Name=NO07G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1972bp
ACAAAAGATCTGACCATGGTGGGTTTCCTTCCTCGTGTCGGCGTCGCCCG
CCTTTTGGGCGCTGCCGCGTCTTCGCTGCTGTTCGTCTCATCCACATCAG
CCCAAAGCTTTCCAGGTTGCTCGTCAGCCGATATGCGCCAGCTCACGTTT
GTCGGCCGGGGGCTGATGGGCTGCTTTAGCTTGTCCTTGAGCGAGGTGTT
CATGTTCATGGGGGGGATGTCGGCGGATCAAGACGCGTGGCTGGAGCGCT
GCTCCCAGTCATCGGAAGACTATCAAAGCGAATGCTTTCAGCTCCTCGAG
TCTTTTTTGCAGCAGGCCGCCAGTCAGCCAGGTTCTCTGCCAGCCAAGGT
AGTGAGCAACGTGTACAAGAACCCGCCCCAAGTGCTCGATTGCGTGGCGC
AGATCAACAACCAGGTGGAAACGTTTAGCCCCACGTGCAAGGATGGTGCC
ATGCTCGGGCAAATCACCCGGGCATCAGCTCGCCTGGCACCTTACATTGA
CAGCATCCAGCCTTGGCGTTTGCCTCCCCAAATTCAGGGATGTGCGGTGA
ACGACTTACTGAACTTGCAGCTGGCTTATTTGCCTTTTATTGACTGCCTG
AATTTCAATTTCACCCAGCTCGCGGAGGGCTTCACGACGTCAAGCGGCCC
TGGAATGGGTGCGCAATTGGAGGACGCCACTATCCGTGCAGGAATTAGCT
GCTTGTATGACCCACATATGAGTAATGCCGATTGTATGTACTTGGTGGTC
GTGGCTTCGACCAAGTTGCAGGGTGGGAGCTGGAGTGACATGGGGGTATA
TGCCATGCGGGCCTTGACTGACTACCCGCAAGCCTGTCAGTGCGTCCGTG
GAGCGAGCCAATCCGCAGCCTTCTCGGCGGTGGCGACCAGCTGCCCCGCA
CATGATACGTTGAATTTCCTGACGGCCTTGGAAGCGTCCTGTGCGTTTGA
GCCGCAGATCCAGTCGAGTTTGAGCAAGGCGCTGAATGGCTGCTCGGATG
CAGATGTGGTGCGGACAGAGTTGGTTGGGCTGCAGGTTCTTGATTGTATG
GAGGCAAACGGGGGGGATCTAGCGGGGAGCACGGATGTGTTGACGGAGGC
GAGGGTTGCTCAGATTGCCAACTGTGTGAATAAGCCCGGGTATGATAATG
CAGAGTGCTTGGGCTTATTAGGTTCGCTTGCCCGCATTGCGGCAGATGAG
CCTGATAGCTTGGAGGCGCAGGTGGTGGAGAAGATGACAAAAGACGGGGC
GGCTTTTTGTGGATGCTTGGACCGGGCGGCTAGGAGCCCTCCGGCAAAAG
ACTTGTCGCCCACATGCGAGGTGCCTTATTCGGGGATCAAATTTCTACAA
GACAACAAGAAATACTGCGAGGCCATTGCGGCCGTGCCTCCCTCTTTTTG
GACGGCGGCAGCTGCGGGGATTGCAGCTGCGGCCAAGGCGCCCTTATCTT
CCGAGACGGTACCAAAGGCGGGGGAAAAGCCGACCGAGACCCCAGTGACG
GAGGAGGTGGAGCTGGGGCCGACCGGACCAAAGCATCTTCCTCAAAAATC
GGACAGTGGCTTTTGGGACCATTTGCCGGCCTTTTCTTCGGCGAGTTTTA
TGAGTCAGTCCTCGGAGTCGGATGAAGGCGGAAAGGATGTGGAGACAGGA
AGGCGATTGGAGCATGGCGGGGACGACAAGCTACGTCTTGTGGGGGGAGC
GAAGGCCGAGTTGGTGGGCGAGCACCCACATTTGCGGTTCAAAGGAAATA
CCCAAAAGCAGAAGGAGGCGTAACTCATGGTAATGAATGTATCCAGACAG
AAGGGGTTGAACTAAATGTGTGTGAGAGAAGAAATGCTAGGGTGTATGAG
TAAGATGAAAATAGATGCGTGCTAGCAAGAGGCGGGGAATTTACATTTCA
CTGTGGCTCTTTCGACTGGAATCGAGAAACAAAGACTCAAATGAAATGCC
GCGAAGCTTTGAAATGAAATGA
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protein sequence of NO07G02460.1

>NO07G02460.1-protein ID=NO07G02460.1-protein|Name=NO07G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp
MVGFLPRVGVARLLGAAASSLLFVSSTSAQSFPGCSSADMRQLTFVGRGL
MGCFSLSLSEVFMFMGGMSADQDAWLERCSQSSEDYQSECFQLLESFLQQ
AASQPGSLPAKVVSNVYKNPPQVLDCVAQINNQVETFSPTCKDGAMLGQI
TRASARLAPYIDSIQPWRLPPQIQGCAVNDLLNLQLAYLPFIDCLNFNFT
QLAEGFTTSSGPGMGAQLEDATIRAGISCLYDPHMSNADCMYLVVVASTK
LQGGSWSDMGVYAMRALTDYPQACQCVRGASQSAAFSAVATSCPAHDTLN
FLTALEASCAFEPQIQSSLSKALNGCSDADVVRTELVGLQVLDCMEANGG
DLAGSTDVLTEARVAQIANCVNKPGYDNAECLGLLGSLARIAADEPDSLE
AQVVEKMTKDGAAFCGCLDRAARSPPAKDLSPTCEVPYSGIKFLQDNKKY
CEAIAAVPPSFWTAAAAGIAAAAKAPLSSETVPKAGEKPTETPVTEEVEL
GPTGPKHLPQKSDSGFWDHLPAFSSASFMSQSSESDEGGKDVETGRRLEH
GGDDKLRLVGGAKAELVGEHPHLRFKGNTQKQKEA*
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mRNA from alignment at chr7:711764..713735+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02460.1 ID=NO07G02460.1|Name=NO07G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1972bp|location=Sequence derived from alignment at chr7:711764..713735+ (Nannochloropsis oceanica)
ACAAAAGATCTGACCATGGTGGGTTTCCTTCCTCGTGTCGGCGTCGCCCG
CCTTTTGGGCGCTGCCGCGTCTTCGCTGCTGTTCGTCTCATCCACATCAG
CCCAAAGCTTTCCAGGTTGCTCGTCAGCCGATATGCGCCAGCTCACGTTT
GTCGGCCGGGGGCTGATGGGCTGCTTTAGCTTGTCCTTGAGCGAGGTGTT
CATGTTCATGGGGGGGATGTCGGCGGATCAAGACGCGTGGCTGGAGCGCT
GCTCCCAGTCATCGGAAGACTATCAAAGCGAATGCTTTCAGCTCCTCGAG
TCTTTTTTGCAGCAGGCCGCCAGTCAGCCAGGTTCTCTGCCAGCCAAGGT
AGTGAGCAACGTGTACAAGAACCCGCCCCAAGTGCTCGATTGCGTGGCGC
AGATCAACAACCAGGTGGAAACGTTTAGCCCCACGTGCAAGGATGGTGCC
ATGCTCGGGCAAATCACCCGGGCATCAGCTCGCCTGGCACCTTACATTGA
CAGCATCCAGCCTTGGCGTTTGCCTCCCCAAATTCAGGGATGTGCGGTGA
ACGACTTACTGAACTTGCAGCTGGCTTATTTGCCTTTTATTGACTGCCTG
AATTTCAATTTCACCCAGCTCGCGGAGGGCTTCACGACGTCAAGCGGCCC
TGGAATGGGTGCGCAATTGGAGGACGCCACTATCCGTGCAGGAATTAGCT
GCTTGTATGACCCACATATGAGTAATGCCGATTGTATGTACTTGGTGGTC
GTGGCTTCGACCAAGTTGCAGGGTGGGAGCTGGAGTGACATGGGGGTATA
TGCCATGCGGGCCTTGACTGACTACCCGCAAGCCTGTCAGTGCGTCCGTG
GAGCGAGCCAATCCGCAGCCTTCTCGGCGGTGGCGACCAGCTGCCCCGCA
CATGATACGTTGAATTTCCTGACGGCCTTGGAAGCGTCCTGTGCGTTTGA
GCCGCAGATCCAGTCGAGTTTGAGCAAGGCGCTGAATGGCTGCTCGGATG
CAGATGTGGTGCGGACAGAGTTGGTTGGGCTGCAGGTTCTTGATTGTATG
GAGGCAAACGGGGGGGATCTAGCGGGGAGCACGGATGTGTTGACGGAGGC
GAGGGTTGCTCAGATTGCCAACTGTGTGAATAAGCCCGGGTATGATAATG
CAGAGTGCTTGGGCTTATTAGGTTCGCTTGCCCGCATTGCGGCAGATGAG
CCTGATAGCTTGGAGGCGCAGGTGGTGGAGAAGATGACAAAAGACGGGGC
GGCTTTTTGTGGATGCTTGGACCGGGCGGCTAGGAGCCCTCCGGCAAAAG
ACTTGTCGCCCACATGCGAGGTGCCTTATTCGGGGATCAAATTTCTACAA
GACAACAAGAAATACTGCGAGGCCATTGCGGCCGTGCCTCCCTCTTTTTG
GACGGCGGCAGCTGCGGGGATTGCAGCTGCGGCCAAGGCGCCCTTATCTT
CCGAGACGGTACCAAAGGCGGGGGAAAAGCCGACCGAGACCCCAGTGACG
GAGGAGGTGGAGCTGGGGCCGACCGGACCAAAGCATCTTCCTCAAAAATC
GGACAGTGGCTTTTGGGACCATTTGCCGGCCTTTTCTTCGGCGAGTTTTA
TGAGTCAGTCCTCGGAGTCGGATGAAGGCGGAAAGGATGTGGAGACAGGA
AGGCGATTGGAGCATGGCGGGGACGACAAGCTACGTCTTGTGGGGGGAGC
GAAGGCCGAGTTGGTGGGCGAGCACCCACATTTGCGGTTCAAAGGAAATA
CCCAAAAGCAGAAGGAGGCGTAACTCATGGTAATGAATGTATCCAGACAG
AAGGGGTTGAACTAAATGTGTGTGAGAGAAGAAATGCTAGGGTGTATGAG
TAAGATGAAAATAGATGCGTGCTAGCAAGAGGCGGGGAATTTACATTTCA
CTGTGGCTCTTTCGACTGGAATCGAGAAACAAAGACTCAAATGAAATGCC
GCGAAGCTTTGAAATGAAATGA
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Coding sequence (CDS) from alignment at chr7:711764..713735+

>NO07G02460.1 ID=NO07G02460.1|Name=NO07G02460.1|organism=Nannochloropsis oceanica|type=CDS|length=1758bp|location=Sequence derived from alignment at chr7:711764..713735+ (Nannochloropsis oceanica)
ATGGTGGGTTTCCTTCCTCGTGTCGGCGTCGCCCGCCTTTTGGGCGCTGC
CGCGTCTTCGCTGCTGTTCGTCTCATCCACATCAGCCCAAAGCTTTCCAG
GTTGCTCGTCAGCCGATATGCGCCAGCTCACGTTTGTCGGCCGGGGGCTG
ATGGGCTGCTTTAGCTTGTCCTTGAGCGAGGTGTTCATGTTCATGGGGGG
GATGTCGGCGGATCAAGACGCGTGGCTGGAGCGCTGCTCCCAGTCATCGG
AAGACTATCAAAGCGAATGCTTTCAGCTCCTCGAGTCTTTTTTGCAGCAG
GCCGCCAGTCAGCCAGGTTCTCTGCCAGCCAAGGTAGTGAGCAACGTGTA
CAAGAACCCGCCCCAAGTGCTCGATTGCGTGGCGCAGATCAACAACCAGG
TGGAAACGTTTAGCCCCACGTGCAAGGATGGTGCCATGCTCGGGCAAATC
ACCCGGGCATCAGCTCGCCTGGCACCTTACATTGACAGCATCCAGCCTTG
GCGTTTGCCTCCCCAAATTCAGGGATGTGCGGTGAACGACTTACTGAACT
TGCAGCTGGCTTATTTGCCTTTTATTGACTGCCTGAATTTCAATTTCACC
CAGCTCGCGGAGGGCTTCACGACGTCAAGCGGCCCTGGAATGGGTGCGCA
ATTGGAGGACGCCACTATCCGTGCAGGAATTAGCTGCTTGTATGACCCAC
ATATGAGTAATGCCGATTGTATGTACTTGGTGGTCGTGGCTTCGACCAAG
TTGCAGGGTGGGAGCTGGAGTGACATGGGGGTATATGCCATGCGGGCCTT
GACTGACTACCCGCAAGCCTGTCAGTGCGTCCGTGGAGCGAGCCAATCCG
CAGCCTTCTCGGCGGTGGCGACCAGCTGCCCCGCACATGATACGTTGAAT
TTCCTGACGGCCTTGGAAGCGTCCTGTGCGTTTGAGCCGCAGATCCAGTC
GAGTTTGAGCAAGGCGCTGAATGGCTGCTCGGATGCAGATGTGGTGCGGA
CAGAGTTGGTTGGGCTGCAGGTTCTTGATTGTATGGAGGCAAACGGGGGG
GATCTAGCGGGGAGCACGGATGTGTTGACGGAGGCGAGGGTTGCTCAGAT
TGCCAACTGTGTGAATAAGCCCGGGTATGATAATGCAGAGTGCTTGGGCT
TATTAGGTTCGCTTGCCCGCATTGCGGCAGATGAGCCTGATAGCTTGGAG
GCGCAGGTGGTGGAGAAGATGACAAAAGACGGGGCGGCTTTTTGTGGATG
CTTGGACCGGGCGGCTAGGAGCCCTCCGGCAAAAGACTTGTCGCCCACAT
GCGAGGTGCCTTATTCGGGGATCAAATTTCTACAAGACAACAAGAAATAC
TGCGAGGCCATTGCGGCCGTGCCTCCCTCTTTTTGGACGGCGGCAGCTGC
GGGGATTGCAGCTGCGGCCAAGGCGCCCTTATCTTCCGAGACGGTACCAA
AGGCGGGGGAAAAGCCGACCGAGACCCCAGTGACGGAGGAGGTGGAGCTG
GGGCCGACCGGACCAAAGCATCTTCCTCAAAAATCGGACAGTGGCTTTTG
GGACCATTTGCCGGCCTTTTCTTCGGCGAGTTTTATGAGTCAGTCCTCGG
AGTCGGATGAAGGCGGAAAGGATGTGGAGACAGGAAGGCGATTGGAGCAT
GGCGGGGACGACAAGCTACGTCTTGTGGGGGGAGCGAAGGCCGAGTTGGT
GGGCGAGCACCCACATTTGCGGTTCAAAGGAAATACCCAAAAGCAGAAGG
AGGCGTAA
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Synonyms
Publications