NO07G02440.1, NO07G02440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02440.1
Unique NameNO07G02440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1347
Alignment locationchr7:707139..708867 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:707139..708867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G02440.1 vs.
Match: EWM27131.1 (ornithine aminotransferase [Nannochloropsis gaditana])

HSP 1 Score: 721.5 bits (1861), Expect = 1.600e-204
Identity = 347/438 (79.22%), Postives = 393/438 (89.73%), Query Frame = 0
Query:   11 QLMRRQAPST--ISNSSRQRLLSSTAANTGATKSEKFMDLEDKHGAHNYHPLPVVLSRGQGVHVWDVEGNRYLDFLSAYSAVNQGHCHPKIVDALVKQASKLTLASRAFYTDALGEYQRFVTGYFGYDRVLPMNTGVEGGETAVKLARRWGYEVKGIPTDQAQIVFARGNFWGRTLGAISSSTDPSSRKGFGPFVPGFDLVDYDDPDALEALFEKEAARIAGFMVEPIQGEAGVVVPQEGYMKKIKAICDKYNVLLIADEVQTGLGRTGKLLASEWDETKPDILVLGKALSGGVMPVSAVLASDEVMLTIKPGEHGSTFGGNPLACKVATAALEVLRDEKLADNAMVMGERFRAGLRRISSRGLVEIVRGRGLLNAMVIEDRKGDGGPAWDICLELKRHGLLAKPTHGNIIRLAPPLSINAGQIDEALGIVEASLKKF 447
            Q +  QA +T  I +  R+RL SS AA    +K++++M LED HGAHNYHPLPVVLSRGQGVHVWDV+ N+YLDFLSAYSAVNQGHCHPKI+ AL +QASKLTLASRAFYTDALGEYQ+F+T YFGYDRVLPMNTGVEGGETAVKLARRWGY+VK IP DQA +VFARGNFWGRTLGAISSSTDPSSRKGFGPF+PGFDL+DYDDP A EAL E++  RIA FMVEPIQGEAGVVVPQE Y+KKIKAIC+K+N+LLIADEVQTGLGRTGKLLASEWD TKPDILVLGKALSGGV+PVSAVLAS+EVMLTI+PGEHGSTFGGNPLACKVA AAL VL+DEKL +N+M+MGERFR+GL+ I + GL+E VRGRGL+NAMVI DRKGDGGPAWD+CL LK +G+LAKPTHGNIIRLAPPL I+A Q+D+AL IVE+++KKF
Sbjct:   19 QRLNYQANTTEDILSGGRRRLFSSMAAKAVQSKADRYMQLEDLHGAHNYHPLPVVLSRGQGVHVWDVDNNKYLDFLSAYSAVNQGHCHPKIIAALTEQASKLTLASRAFYTDALGEYQQFITNYFGYDRVLPMNTGVEGGETAVKLARRWGYDVKKIPRDQAMVVFARGNFWGRTLGAISSSTDPSSRKGFGPFIPGFDLIDYDDPAAFEALCERKGRRIAAFMVEPIQGEAGVVVPQENYLKKIKAICEKHNILLIADEVQTGLGRTGKLLASEWDSTKPDILVLGKALSGGVLPVSAVLASNEVMLTIQPGEHGSTFGGNPLACKVAAAALAVLQDEKLVENSMIMGERFRSGLKAIPANGLIESVRGRGLMNAMVIADRKGDGGPAWDVCLMLKEYGMLAKPTHGNIIRLAPPLCIDADQVDQALDIVESAIKKF 456          
The following BLAST results are available for this feature:
BLAST of NO07G02440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27131.11.600e-20479.22ornithine aminotransferase [Nannochloropsis gadita... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02440NO07G02440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02440.1NO07G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02440.1.cds1NO07G02440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02440.1.cds2NO07G02440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02440.1.cds3NO07G02440.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02440.1 ID=NO07G02440.1|Name=NO07G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
ATGGCAAGCAGTACGAGCCGCGTGCTCACGCAGCTGATGCGGCGTCAGGC
TCCCAGTACCATCAGCAACAGCAGCAGACAGAGACTCTTGTCGTCGACTG
CGGCAAATACTGGCGCGACCAAGTCTGAGAAATTCATGGATCTTGAGGAT
AAACACGGAGCACACAACTACCACCCGTTACCTGTGGTGCTCTCCCGGGG
CCAAGGCGTGCATGTGTGGGATGTGGAAGGCAACCGGTATCTCGATTTTT
TGTCCGCCTACTCCGCCGTGAACCAAGGGCATTGTCACCCCAAGATTGTC
GACGCGCTCGTGAAGCAAGCCAGCAAATTGACTTTAGCCTCTCGGGCATT
TTATACGGATGCGTTGGGGGAGTACCAGCGGTTTGTGACGGGCTATTTTG
GATATGATCGTGTACTGCCCATGAATACCGGCGTTGAGGGCGGCGAGACG
GCAGTGAAACTCGCCCGTCGTTGGGGCTACGAAGTGAAAGGCATCCCTAC
CGATCAAGCGCAGATCGTCTTCGCTCGCGGTAACTTCTGGGGGAGAACCC
TGGGTGCGATCTCTTCCTCTACTGATCCCTCCTCTCGAAAGGGTTTCGGG
CCCTTTGTTCCTGGCTTTGACCTGGTGGACTACGATGACCCGGATGCCTT
GGAAGCCCTGTTTGAGAAGGAGGCGGCGAGGATCGCGGGTTTTATGGTTG
AACCGATTCAGGGGGAGGCGGGAGTGGTGGTTCCGCAGGAGGGATACATG
AAGAAGATCAAAGCGATTTGCGATAAGTACAATGTGCTTTTGATTGCCGA
TGAGGTCCAGACGGGGTTGGGTAGAACGGGAAAGTTGCTCGCGTCGGAGT
GGGATGAGACGAAGCCGGATATTTTGGTGCTGGGGAAGGCGTTGTCTGGC
GGGGTGATGCCTGTGTCGGCGGTGTTGGCAAGTGACGAAGTCATGCTCAC
CATTAAACCGGGGGAGCACGGGTCGACATTTGGGGGGAACCCGCTCGCGT
GTAAAGTTGCAACGGCGGCTTTGGAAGTACTGAGGGATGAGAAGCTGGCG
GATAATGCGATGGTGATGGGGGAGAGGTTTAGAGCGGGCTTGAGGCGGAT
CTCGAGTCGGGGGTTGGTGGAGATCGTGAGGGGCAGGGGGCTGTTGAATG
CCATGGTGATTGAGGACCGAAAGGGGGATGGAGGACCGGCATGGGACATA
TGTTTGGAGTTAAAGAGGCATGGGTTGTTGGCAAAACCGACGCATGGGAA
TATCATTCGCCTAGCCCCGCCACTAAGTATCAACGCTGGGCAAATCGATG
AGGCTCTGGGAATTGTTGAGGCGTCTTTGAAGAAGTTCATGCGTTAG
back to top

protein sequence of NO07G02440.1

>NO07G02440.1-protein ID=NO07G02440.1-protein|Name=NO07G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MASSTSRVLTQLMRRQAPSTISNSSRQRLLSSTAANTGATKSEKFMDLED
KHGAHNYHPLPVVLSRGQGVHVWDVEGNRYLDFLSAYSAVNQGHCHPKIV
DALVKQASKLTLASRAFYTDALGEYQRFVTGYFGYDRVLPMNTGVEGGET
AVKLARRWGYEVKGIPTDQAQIVFARGNFWGRTLGAISSSTDPSSRKGFG
PFVPGFDLVDYDDPDALEALFEKEAARIAGFMVEPIQGEAGVVVPQEGYM
KKIKAICDKYNVLLIADEVQTGLGRTGKLLASEWDETKPDILVLGKALSG
GVMPVSAVLASDEVMLTIKPGEHGSTFGGNPLACKVATAALEVLRDEKLA
DNAMVMGERFRAGLRRISSRGLVEIVRGRGLLNAMVIEDRKGDGGPAWDI
CLELKRHGLLAKPTHGNIIRLAPPLSINAGQIDEALGIVEASLKKFMR*
back to top

mRNA from alignment at chr7:707139..708867+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02440.1 ID=NO07G02440.1|Name=NO07G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1729bp|location=Sequence derived from alignment at chr7:707139..708867+ (Nannochloropsis oceanica)
ATGGCAAGCAGTACGAGCCGCGTGCTCACGCAGCTGATGCGGCGTCAGGC TCCCAGTACCATCAGCAACAGCAGCAGACAGAGACTCTTGTCGTCGACTG CGGCAAATACTGGCGCGACCAAGTCTGAGAAATTCATGGATCTTGAGGTA CGCGAGGAAGACGGCAGGAGGGGAGGGAAAGCTGGAGGATAGGTAGTATG GTGGGCCTTATCATACACAGGCCTAAAAAGCCTCCGTGATTCCTTTTCTT AGACGTAGGGCCATGTTCATAATATGGGAAATGCGGTCGCGGTAATTAGT CCGCCTCATGTTTGGATGTATGTAGTTCTAGAAGATGCCCGCCACCTTTT TCCGTCCCTCGTCTCTCACCATCCTCTTTCCTTCCCCTTACTATTTTACC ACCACCATCATTCTCAGGATAAACACGGAGCACACAACTACCACCCGTTA CCTGTGGTGCTCTCCCGGGGCCAAGGCGTGCATGTGTGGGATGTGGAAGG CAACCGGTATCTCGATTTTTTGTCCGCCTACTCCGCCGTGAACCAAGGGC ATTGTCACCCCAAGATTGTCGACGCGCTCGTGAAGCAAGCCAGCAAATTG ACTTTAGCCTCTCGGGCATTTTATACGGATGCGTTGGGGGAGTACCAGCG GTTTGTGACGGGCTATTTTGGATATGATCGTGTACTGCCCATGAATACCG GCGTTGAGGGCGGCGAGACGGCAGTGGTGCGTACATCTTGGGTAGTTTGG GGGCTTTCTACTCTTAATTCAAGTCGTTTTTTTTTTCTGTATTCAATCTG TGCTTCTTTCATCCCCCATCCCTTTCCCCATTGAACAGAAACTCGCCCGT CGTTGGGGCTACGAAGTGAAAGGCATCCCTACCGATCAAGCGCAGATCGT CTTCGCTCGCGGTAACTTCTGGGGGAGAACCCTGGGTGCGATCTCTTCCT CTACTGATCCCTCCTCTCGAAAGGGTTTCGGGCCCTTTGTTCCTGGCTTT GACCTGGTGGACTACGATGACCCGGATGCCTTGGAAGCCCTGTTTGAGAA GGAGGCGGCGAGGATCGCGGGTTTTATGGTTGAACCGATTCAGGGGGAGG CGGGAGTGGTGGTTCCGCAGGAGGGATACATGAAGAAGATCAAAGCGATT TGCGATAAGTACAATGTGCTTTTGATTGCCGATGAGGTCCAGACGGGGTT GGGTAGAACGGGAAAGTTGCTCGCGTCGGAGTGGGATGAGACGAAGCCGG ATATTTTGGTGCTGGGGAAGGCGTTGTCTGGCGGGGTGATGCCTGTGTCG GCGGTGTTGGCAAGTGACGAAGTCATGCTCACCATTAAACCGGGGGAGCA CGGGTCGACATTTGGGGGGAACCCGCTCGCGTGTAAAGTTGCAACGGCGG CTTTGGAAGTACTGAGGGATGAGAAGCTGGCGGATAATGCGATGGTGATG GGGGAGAGGTTTAGAGCGGGCTTGAGGCGGATCTCGAGTCGGGGGTTGGT GGAGATCGTGAGGGGCAGGGGGCTGTTGAATGCCATGGTGATTGAGGACC GAAAGGGGGATGGAGGACCGGCATGGGACATATGTTTGGAGTTAAAGAGG CATGGGTTGTTGGCAAAACCGACGCATGGGAATATCATTCGCCTAGCCCC GCCACTAAGTATCAACGCTGGGCAAATCGATGAGGCTCTGGGAATTGTTG AGGCGTCTTTGAAGAAGTTCATGCGTTAG
back to top

Coding sequence (CDS) from alignment at chr7:707139..708867+

>NO07G02440.1 ID=NO07G02440.1|Name=NO07G02440.1|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at chr7:707139..708867+ (Nannochloropsis oceanica)
ATGGCAAGCAGTACGAGCCGCGTGCTCACGCAGCTGATGCGGCGTCAGGC
TCCCAGTACCATCAGCAACAGCAGCAGACAGAGACTCTTGTCGTCGACTG
CGGCAAATACTGGCGCGACCAAGTCTGAGAAATTCATGGATCTTGAGGAT
AAACACGGAGCACACAACTACCACCCGTTACCTGTGGTGCTCTCCCGGGG
CCAAGGCGTGCATGTGTGGGATGTGGAAGGCAACCGGTATCTCGATTTTT
TGTCCGCCTACTCCGCCGTGAACCAAGGGCATTGTCACCCCAAGATTGTC
GACGCGCTCGTGAAGCAAGCCAGCAAATTGACTTTAGCCTCTCGGGCATT
TTATACGGATGCGTTGGGGGAGTACCAGCGGTTTGTGACGGGCTATTTTG
GATATGATCGTGTACTGCCCATGAATACCGGCGTTGAGGGCGGCGAGACG
GCAGTGAAACTCGCCCGTCGTTGGGGCTACGAAGTGAAAGGCATCCCTAC
CGATCAAGCGCAGATCGTCTTCGCTCGCGGTAACTTCTGGGGGAGAACCC
TGGGTGCGATCTCTTCCTCTACTGATCCCTCCTCTCGAAAGGGTTTCGGG
CCCTTTGTTCCTGGCTTTGACCTGGTGGACTACGATGACCCGGATGCCTT
GGAAGCCCTGTTTGAGAAGGAGGCGGCGAGGATCGCGGGTTTTATGGTTG
AACCGATTCAGGGGGAGGCGGGAGTGGTGGTTCCGCAGGAGGGATACATG
AAGAAGATCAAAGCGATTTGCGATAAGTACAATGTGCTTTTGATTGCCGA
TGAGGTCCAGACGGGGTTGGGTAGAACGGGAAAGTTGCTCGCGTCGGAGT
GGGATGAGACGAAGCCGGATATTTTGGTGCTGGGGAAGGCGTTGTCTGGC
GGGGTGATGCCTGTGTCGGCGGTGTTGGCAAGTGACGAAGTCATGCTCAC
CATTAAACCGGGGGAGCACGGGTCGACATTTGGGGGGAACCCGCTCGCGT
GTAAAGTTGCAACGGCGGCTTTGGAAGTACTGAGGGATGAGAAGCTGGCG
GATAATGCGATGGTGATGGGGGAGAGGTTTAGAGCGGGCTTGAGGCGGAT
CTCGAGTCGGGGGTTGGTGGAGATCGTGAGGGGCAGGGGGCTGTTGAATG
CCATGGTGATTGAGGACCGAAAGGGGGATGGAGGACCGGCATGGGACATA
TGTTTGGAGTTAAAGAGGCATGGGTTGTTGGCAAAACCGACGCATGGGAA
TATCATTCGCCTAGCCCCGCCACTAAGTATCAACGCTGGGCAAATCGATG
AGGCTCTGGGAATTGTTGAGGCGTCTTTGAAGAAGTTCATGCGTTAG
back to top
Synonyms
Publications