NO07G02360.1, NO07G02360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02360.1
Unique NameNO07G02360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1168
Alignment locationchr7:694708..695875 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:694708..695875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G02360.1 vs.
Match: XP_005856404.1 (hypothetical protein NGA_2096500 [Nannochloropsis gaditana CCMP526]; EKU19961.1 hypothetical protein NGA_2096500 [Nannochloropsis gaditana CCMP526]; EWM27158.1 hypothetical protein Naga_100010g69 [Nannochloropsis gaditana])

HSP 1 Score: 226.1 bits (575), Expect = 9.200e-56
Identity = 112/149 (75.17%), Postives = 130/149 (87.25%), Query Frame = 0 
Query:   42 GRNAKTRVNRLFTVHALIMLAVGLVSASFPEVLVYILHHNAEGFHARHEGGAARIAFVTMRVFGCFLLAQAYVLYVVRTVSDGTMRRAVVQSYFVAFFLTTIALTRAQLTEDMPVRTSNWLVISIFAVLTAAYAWYSFFERISVFELGR 191
            GR+AK RVN+LF +HA IM  +GL+SA FPEVLVY+LHH+++GFH+RHEGG AR+AFVTMRVFGCFLLAQAY+L+V+R  +DG MRRA VQSYFVAF LTT+AL RAQLTEDMPVR SNWLVI  F  LT AYAW+SFFERISV+ELGR
Sbjct:   25 GRDAKKRVNKLFAIHAGIMFTLGLLSALFPEVLVYLLHHSSDGFHSRHEGGTARVAFVTMRVFGCFLLAQAYLLFVLRGGTDGNMRRAAVQSYFVAFGLTTLALARAQLTEDMPVRLSNWLVILSFFALTMAYAWFSFFERISVYELGR 173
The following BLAST results are available for this feature:
BLAST of NO07G02360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856404.19.200e-5675.17hypothetical protein NGA_2096500 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02360NO07G02360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02360.1NO07G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02360.1.cds1NO07G02360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02360.1 ID=NO07G02360.1|Name=NO07G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1168bp
TTATCTTTATCTTATCTTTATCTTATCTTTATCTTATCTTTATCTTATCT
TTATCTCATTTTTATCTTTCATCTTATCTTTTATCGTATCGTCTGAAGCA
TTGCCGTTGGGGGAGCCGTTGGTGAAGCTCTCACGTTGGCATCGTGCGGC
CCTTACCGTGTGCCCAACCTGCTGTCAACTAGACGCTTGCTTAAGGTGAA
TAGGAATTGGTCGCACATAAAATTTGAAATCGATGATCCTGTTTGTAAAG
AAAGCAAACATTAATTGAATCGGGCCCCGCCATCGGGAAAGAGAGATCTT
CTCTGAGACAGTCACTGCCTTCTTTTCTTTCTCTTCGAGGGGAGAATTTA
TAATGCCTTGTTGTTCACCATCAGCCACGAAGTCGCTGAGCAAACCCCAG
TCTCAGAAGGCACCTTCTTGATCACAGCACTGAATTCCTGGAATCGTCAA
GTCCCTTTTAACACTCTGACCAACCCATGGCTTCACCACAGGCGAGCAAC
AAGAAGGCGCGCAATACCATGCTGCGAATTGGTGGGCCGCCTGCGCGACC
TTTTGGTGCCGGTCGAAGAGGGGCGCCAGGAGATGGTGCATTTTTATTCG
GGAGAAATGCGAAGACGCGAGTCAATCGCCTATTTACCGTCCACGCTTTG
ATTATGTTGGCTGTGGGGCTGGTGAGTGCCTCTTTCCCCGAAGTCCTTGT
TTACATCCTCCACCACAATGCCGAGGGATTCCACGCACGCCACGAAGGCG
GTGCTGCACGCATCGCGTTTGTAACCATGAGAGTCTTTGGTTGCTTCCTG
TTGGCCCAAGCGTACGTACTTTACGTCGTGAGGACCGTCTCGGACGGCAC
CATGCGTCGGGCTGTGGTTCAAAGCTATTTCGTGGCTTTTTTTCTCACGA
CGATAGCTTTAACGCGGGCTCAGCTCACAGAGGACATGCCTGTACGTACA
AGCAACTGGCTGGTTATTTCAATATTTGCGGTGCTCACAGCAGCCTACGC
TTGGTATTCGTTCTTTGAGCGGATAAGCGTTTTCGAGCTGGGACGATGAA
GCCTTGGAGAGAGAGGAAGAGCTTGAAGAAGCGAAAAGGAGGGAATGTAC
AGGCACAATTTGCAAGTAATTTAAAGCATCAAGATAAGTAACACAAGCAT
GCTATTCTCTTTATTGGT
back to top

protein sequence of NO07G02360.1

>NO07G02360.1-protein ID=NO07G02360.1-protein|Name=NO07G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MASPQASNKKARNTMLRIGGPPARPFGAGRRGAPGDGAFLFGRNAKTRVN
RLFTVHALIMLAVGLVSASFPEVLVYILHHNAEGFHARHEGGAARIAFVT
MRVFGCFLLAQAYVLYVVRTVSDGTMRRAVVQSYFVAFFLTTIALTRAQL
TEDMPVRTSNWLVISIFAVLTAAYAWYSFFERISVFELGR*
back to top

mRNA from alignment at chr7:694708..695875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02360.1 ID=NO07G02360.1|Name=NO07G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1168bp|location=Sequence derived from alignment at chr7:694708..695875- (Nannochloropsis oceanica)
TTATCTTTATCTTATCTTTATCTTATCTTTATCTTATCTTTATCTTATCT
TTATCTCATTTTTATCTTTCATCTTATCTTTTATCGTATCGTCTGAAGCA
TTGCCGTTGGGGGAGCCGTTGGTGAAGCTCTCACGTTGGCATCGTGCGGC
CCTTACCGTGTGCCCAACCTGCTGTCAACTAGACGCTTGCTTAAGGTGAA
TAGGAATTGGTCGCACATAAAATTTGAAATCGATGATCCTGTTTGTAAAG
AAAGCAAACATTAATTGAATCGGGCCCCGCCATCGGGAAAGAGAGATCTT
CTCTGAGACAGTCACTGCCTTCTTTTCTTTCTCTTCGAGGGGAGAATTTA
TAATGCCTTGTTGTTCACCATCAGCCACGAAGTCGCTGAGCAAACCCCAG
TCTCAGAAGGCACCTTCTTGATCACAGCACTGAATTCCTGGAATCGTCAA
GTCCCTTTTAACACTCTGACCAACCCATGGCTTCACCACAGGCGAGCAAC
AAGAAGGCGCGCAATACCATGCTGCGAATTGGTGGGCCGCCTGCGCGACC
TTTTGGTGCCGGTCGAAGAGGGGCGCCAGGAGATGGTGCATTTTTATTCG
GGAGAAATGCGAAGACGCGAGTCAATCGCCTATTTACCGTCCACGCTTTG
ATTATGTTGGCTGTGGGGCTGGTGAGTGCCTCTTTCCCCGAAGTCCTTGT
TTACATCCTCCACCACAATGCCGAGGGATTCCACGCACGCCACGAAGGCG
GTGCTGCACGCATCGCGTTTGTAACCATGAGAGTCTTTGGTTGCTTCCTG
TTGGCCCAAGCGTACGTACTTTACGTCGTGAGGACCGTCTCGGACGGCAC
CATGCGTCGGGCTGTGGTTCAAAGCTATTTCGTGGCTTTTTTTCTCACGA
CGATAGCTTTAACGCGGGCTCAGCTCACAGAGGACATGCCTGTACGTACA
AGCAACTGGCTGGTTATTTCAATATTTGCGGTGCTCACAGCAGCCTACGC
TTGGTATTCGTTCTTTGAGCGGATAAGCGTTTTCGAGCTGGGACGATGAA
GCCTTGGAGAGAGAGGAAGAGCTTGAAGAAGCGAAAAGGAGGGAATGTAC
AGGCACAATTTGCAAGTAATTTAAAGCATCAAGATAAGTAACACAAGCAT
GCTATTCTCTTTATTGGT
back to top

Coding sequence (CDS) from alignment at chr7:694708..695875-

>NO07G02360.1 ID=NO07G02360.1|Name=NO07G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=573bp|location=Sequence derived from alignment at chr7:694708..695875- (Nannochloropsis oceanica)
ATGGCTTCACCACAGGCGAGCAACAAGAAGGCGCGCAATACCATGCTGCG
AATTGGTGGGCCGCCTGCGCGACCTTTTGGTGCCGGTCGAAGAGGGGCGC
CAGGAGATGGTGCATTTTTATTCGGGAGAAATGCGAAGACGCGAGTCAAT
CGCCTATTTACCGTCCACGCTTTGATTATGTTGGCTGTGGGGCTGGTGAG
TGCCTCTTTCCCCGAAGTCCTTGTTTACATCCTCCACCACAATGCCGAGG
GATTCCACGCACGCCACGAAGGCGGTGCTGCACGCATCGCGTTTGTAACC
ATGAGAGTCTTTGGTTGCTTCCTGTTGGCCCAAGCGTACGTACTTTACGT
CGTGAGGACCGTCTCGGACGGCACCATGCGTCGGGCTGTGGTTCAAAGCT
ATTTCGTGGCTTTTTTTCTCACGACGATAGCTTTAACGCGGGCTCAGCTC
ACAGAGGACATGCCTGTACGTACAAGCAACTGGCTGGTTATTTCAATATT
TGCGGTGCTCACAGCAGCCTACGCTTGGTATTCGTTCTTTGAGCGGATAA
GCGTTTTCGAGCTGGGACGATGA
back to top
Synonyms
Publications