NO07G02350.1, NO07G02350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02350.1
Unique NameNO07G02350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1515
Alignment locationchr7:692852..694707 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:692852..694707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02350.1 vs.
Match: EWM27213.1 (wd repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 518.1 bits (1333), Expect = 3.100e-143
Identity = 251/414 (60.63%), Postives = 317/414 (76.57%), Query Frame = 0 
Query:    1 MHDDSL--------GCSNV--AAVALIVVAACPKERALRVLDFATGTTYFTFADTAATALVPVAGARAAEGLGSAGDYLMSSQNNEQALVFHRWGKTQPLFKCRTPETMGPIVSTPDGLYVLAGGRSGKAYAWEVASGLLVQSWDAHFKSVTCMTLTSDGGFLITGSEDTMVRAWAMADVLAAGKTTGERVGAGGVQPFRSWSSHSLPVTSLYCGYGGPSCRIVSCSLDHTVQVYELANEMGPVCSLRAPSSLACVTMDAGEKRLLVGGALGDIFLVDMDVVSQARTASRALVHAVGGVGSQQQGRSGDEMWDMLAGHSKAVTSLVCSWDGRMTISASEDGSLRWWDVDSQQCVKKVSLDTPGPITGLLLLPRPTALLEMLPKTVLPAPMQPLKKYSTGGEGDGSVFVPGRKED 405
            +HD+S+         C ++  +  + IVVAACPK+R LRV+D ATGTTY TF DTAA+ L PV G + +EGLG+ GDY++SSQ  EQALVFHRWGK QPL KCR  E++GP+V+TPDG ++LAGGRSG+ YAWE+ASG LV +WDAH+K+++CM +TSDGGFLITGSEDT VRAWA++D+LAA +T  +      ++PF SWS+HSLPVT L+CG GGP+CRIVSCSLDH V +YELAN+ G +C+L+APS +AC ++D GEK LLVGG +GDIF++DMDVV QARTASR LV  VG VG      S  E W  LAGH KAV +L  +WDGR+ +SASEDGSLRWW +DS+QCV++V+ D  GP+TGLLLLPRP ALL ++PK VLPAP+QPLKKY       G++ V   K+D
Sbjct:    2 LHDNSMFTGTLMQENCHDIHLSLASEIVVAACPKDRVLRVIDVATGTTYSTFGDTAASGLAPVRGTQTSEGLGTGGDYVISSQLFEQALVFHRWGKAQPLLKCRVSESVGPVVTTPDGFFLLAGGRSGQIYAWEIASGSLVANWDAHYKAISCMVMTSDGGFLITGSEDTTVRAWALSDILAAERTKNDGTKTACIRPFCSWSNHSLPVTGLHCGQGGPTCRIVSCSLDHRVHIYELANKDGALCTLQAPSGVACTSLDPGEKHLLVGGTMGDIFVIDMDVVCQARTASRTLVQFVGTVGPI---GSSKEDWRRLAGHQKAVMALTFTWDGRIALSASEDGSLRWWHMDSRQCVRRVTFDNGGPLTGLLLLPRPAALLHVMPKVVLPAPLQPLKKY-------GAISVTNEKDD 405
The following BLAST results are available for this feature:
BLAST of NO07G02350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27213.13.100e-14360.63wd repeat-containing protein [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02350NO07G02350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02350.1NO07G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02350.1.cds1NO07G02350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02350.1.cds2NO07G02350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02350.1 ID=NO07G02350.1|Name=NO07G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp
AGAAAGAATGCATGACGACAGCCTGGGCTGCAGCAATGTGGCCGCAGTAG
CTTTGATTGTGGTGGCGGCCTGCCCCAAAGAGCGGGCCCTGCGGGTGTTG
GACTTTGCCACGGGCACCACATACTTTACCTTCGCAGACACAGCGGCGAC
TGCGCTTGTCCCTGTGGCCGGGGCGCGGGCCGCGGAAGGGTTGGGCAGTG
CGGGAGACTATCTTATGTCCAGCCAAAATAATGAACAAGCACTGGTATTT
CATCGGTGGGGCAAGACACAGCCGCTCTTTAAGTGCCGCACGCCGGAGAC
GATGGGACCTATCGTGTCCACCCCGGATGGGCTCTACGTGCTTGCGGGAG
GGCGGTCAGGCAAGGCATACGCATGGGAGGTTGCCTCAGGATTGCTTGTA
CAGTCCTGGGACGCACACTTTAAGTCTGTAACTTGCATGACTCTTACGAG
CGACGGGGGGTTCTTGATCACGGGCTCGGAGGACACCATGGTGCGGGCAT
GGGCTATGGCGGACGTGCTGGCGGCTGGCAAAACAACGGGCGAAAGAGTG
GGAGCAGGCGGCGTCCAACCGTTCCGCTCCTGGTCCTCGCACTCCTTGCC
CGTCACCAGTCTGTATTGTGGCTATGGTGGGCCCAGCTGCCGCATCGTAT
CCTGTTCCTTGGATCACACCGTGCAAGTCTACGAGCTAGCAAACGAGATG
GGGCCTGTCTGCTCGCTACGGGCGCCCTCGAGCCTGGCGTGTGTGACGAT
GGACGCGGGAGAGAAACGCTTGCTGGTAGGGGGGGCCCTGGGGGACATAT
TTTTGGTGGACATGGATGTGGTGAGCCAAGCGCGCACGGCAAGTCGGGCC
TTGGTCCACGCCGTCGGCGGGGTTGGCAGTCAGCAGCAGGGAAGGAGTGG
AGATGAGATGTGGGACATGTTGGCGGGGCACAGCAAGGCGGTGACATCGT
TGGTTTGCTCGTGGGATGGCCGGATGACGATTTCGGCTTCTGAGGACGGG
AGTTTACGGTGGTGGGATGTGGATAGTCAGCAGTGTGTGAAAAAGGTGAG
TTTGGATACCCCTGGTCCTATCACAGGCTTGCTCCTCTTGCCTCGTCCTA
CGGCTCTTCTGGAGATGCTACCGAAGACTGTGCTGCCTGCGCCAATGCAG
CCTTTGAAGAAGTACAGCACGGGAGGGGAGGGCGATGGCTCAGTTTTTGT
GCCGGGCAGGAAGGAGGATGGGATGGCCCTGCCTGCTGCCTCCTCGTTCT
TTTTCTCTGTCTTGGACGACAGCGTGGTCGTGAAGGGTGCAGACGTCGAT
GGCATGAAAGAGGAAGTAGTGGAAGAGGGGGAAACCAAGAAGAATGGTAC
GATAGGAGATATTAAGAGGAAGCGTGTCCAAGTACCGAAATACGCGGCCC
ATGGTATTGCCAACAGCATCAAATCGCAGACGAACGTGGGAGCACCAGGA
CCCACGGGAGGGTCCGCAGGGGGGAAAAGGAAGAAAGGCAGAGCGCTAAA
GTAAGTAATCTACGC
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protein sequence of NO07G02350.1

>NO07G02350.1-protein ID=NO07G02350.1-protein|Name=NO07G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp
MHDDSLGCSNVAAVALIVVAACPKERALRVLDFATGTTYFTFADTAATAL
VPVAGARAAEGLGSAGDYLMSSQNNEQALVFHRWGKTQPLFKCRTPETMG
PIVSTPDGLYVLAGGRSGKAYAWEVASGLLVQSWDAHFKSVTCMTLTSDG
GFLITGSEDTMVRAWAMADVLAAGKTTGERVGAGGVQPFRSWSSHSLPVT
SLYCGYGGPSCRIVSCSLDHTVQVYELANEMGPVCSLRAPSSLACVTMDA
GEKRLLVGGALGDIFLVDMDVVSQARTASRALVHAVGGVGSQQQGRSGDE
MWDMLAGHSKAVTSLVCSWDGRMTISASEDGSLRWWDVDSQQCVKKVSLD
TPGPITGLLLLPRPTALLEMLPKTVLPAPMQPLKKYSTGGEGDGSVFVPG
RKEDGMALPAASSFFFSVLDDSVVVKGADVDGMKEEVVEEGETKKNGTIG
DIKRKRVQVPKYAAHGIANSIKSQTNVGAPGPTGGSAGGKRKKGRALK*
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mRNA from alignment at chr7:692852..694707+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02350.1 ID=NO07G02350.1|Name=NO07G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1856bp|location=Sequence derived from alignment at chr7:692852..694707+ (Nannochloropsis oceanica)
AGAAAGAATGCATGACGACAGCCTGGGCTGCAGCAATGTGGCCGCAGTAG
CTTTGATTGTGGTGGCGGCCTGCCCCAAAGAGCGGGCCCTGCGGGTGTTG
GACTTTGCCACGGGCACCACATACTTTACCTTCGCAGACACAGCGGCGAC
TGCGCTTGTCCCTGTGGCCGGGGCGCGGGCCGCGGAAGGGTTGGGCAGTG
CGGGAGACTATCTTATGTCCAGCCAAAATAATGAACAAGCACTGGTATTT
CATCGGTGGGGCAAGACACAGCCGCTCTTTAAGTGCCGCACGCCGGAGAC
GATGGGACCTATCGTGTCCACCCCGGATGGGCTCTACGTGCTTGCGGGAG
GGCGGTCAGGCAAGGCATACGCATGGGAGGTTGCCTCAGGATTGCTTGTA
CAGTCCTGGGACGCACACTTTAAGTCTGTAACTTGCATGACTCTTACGAG
CGACGGGGGGTTCTTGATCACGGGCTCGGAGGACACCATGGTGCGGGCAT
GGGCTATGGCGGACGTGCTGGCGGCTGGCAAAACAACGGGCGAAAGAGTG
GGAGCAGGTAAGAATTTCTATAAATTAAACCTGTGCCAACTGATACTTCT
CTCCTCTTTCTCTTCCTCGTACTGAGTGGCCGACGATTGCATTTGTTTCT
TTCACTTGATGTGGGCAGGGAGGAGGAAAACGACCACGGGATGCGAATGC
GCATTTTTGCGAATTCTTGACTTTCCATGAGAGTTTAAATTAAACTGATA
TAATGAGGCTGATGGTCCGTCTCGCCTTCTTGCTAAAATCTACATGTTAT
CGGTGTGCATGCATATCTGTACTTGTCTTTCTCCAGTCCTCTCTTCATAA
ATTCTAACGTCATTGCCTCTCCCTCTCCTCCTCCATCACTCCACCTAGGC
GGCGTCCAACCGTTCCGCTCCTGGTCCTCGCACTCCTTGCCCGTCACCAG
TCTGTATTGTGGCTATGGTGGGCCCAGCTGCCGCATCGTATCCTGTTCCT
TGGATCACACCGTGCAAGTCTACGAGCTAGCAAACGAGATGGGGCCTGTC
TGCTCGCTACGGGCGCCCTCGAGCCTGGCGTGTGTGACGATGGACGCGGG
AGAGAAACGCTTGCTGGTAGGGGGGGCCCTGGGGGACATATTTTTGGTGG
ACATGGATGTGGTGAGCCAAGCGCGCACGGCAAGTCGGGCCTTGGTCCAC
GCCGTCGGCGGGGTTGGCAGTCAGCAGCAGGGAAGGAGTGGAGATGAGAT
GTGGGACATGTTGGCGGGGCACAGCAAGGCGGTGACATCGTTGGTTTGCT
CGTGGGATGGCCGGATGACGATTTCGGCTTCTGAGGACGGGAGTTTACGG
TGGTGGGATGTGGATAGTCAGCAGTGTGTGAAAAAGGTGAGTTTGGATAC
CCCTGGTCCTATCACAGGCTTGCTCCTCTTGCCTCGTCCTACGGCTCTTC
TGGAGATGCTACCGAAGACTGTGCTGCCTGCGCCAATGCAGCCTTTGAAG
AAGTACAGCACGGGAGGGGAGGGCGATGGCTCAGTTTTTGTGCCGGGCAG
GAAGGAGGATGGGATGGCCCTGCCTGCTGCCTCCTCGTTCTTTTTCTCTG
TCTTGGACGACAGCGTGGTCGTGAAGGGTGCAGACGTCGATGGCATGAAA
GAGGAAGTAGTGGAAGAGGGGGAAACCAAGAAGAATGGTACGATAGGAGA
TATTAAGAGGAAGCGTGTCCAAGTACCGAAATACGCGGCCCATGGTATTG
CCAACAGCATCAAATCGCAGACGAACGTGGGAGCACCAGGACCCACGGGA
GGGTCCGCAGGGGGGAAAAGGAAGAAAGGCAGAGCGCTAAAGTAAGTAAT
CTACGC
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Coding sequence (CDS) from alignment at chr7:692852..694707+

>NO07G02350.1 ID=NO07G02350.1|Name=NO07G02350.1|organism=Nannochloropsis oceanica|type=CDS|length=1497bp|location=Sequence derived from alignment at chr7:692852..694707+ (Nannochloropsis oceanica)
ATGCATGACGACAGCCTGGGCTGCAGCAATGTGGCCGCAGTAGCTTTGAT
TGTGGTGGCGGCCTGCCCCAAAGAGCGGGCCCTGCGGGTGTTGGACTTTG
CCACGGGCACCACATACTTTACCTTCGCAGACACAGCGGCGACTGCGCTT
GTCCCTGTGGCCGGGGCGCGGGCCGCGGAAGGGTTGGGCAGTGCGGGAGA
CTATCTTATGTCCAGCCAAAATAATGAACAAGCACTGGTATTTCATCGGT
GGGGCAAGACACAGCCGCTCTTTAAGTGCCGCACGCCGGAGACGATGGGA
CCTATCGTGTCCACCCCGGATGGGCTCTACGTGCTTGCGGGAGGGCGGTC
AGGCAAGGCATACGCATGGGAGGTTGCCTCAGGATTGCTTGTACAGTCCT
GGGACGCACACTTTAAGTCTGTAACTTGCATGACTCTTACGAGCGACGGG
GGGTTCTTGATCACGGGCTCGGAGGACACCATGGTGCGGGCATGGGCTAT
GGCGGACGTGCTGGCGGCTGGCAAAACAACGGGCGAAAGAGTGGGAGCAG
GCGGCGTCCAACCGTTCCGCTCCTGGTCCTCGCACTCCTTGCCCGTCACC
AGTCTGTATTGTGGCTATGGTGGGCCCAGCTGCCGCATCGTATCCTGTTC
CTTGGATCACACCGTGCAAGTCTACGAGCTAGCAAACGAGATGGGGCCTG
TCTGCTCGCTACGGGCGCCCTCGAGCCTGGCGTGTGTGACGATGGACGCG
GGAGAGAAACGCTTGCTGGTAGGGGGGGCCCTGGGGGACATATTTTTGGT
GGACATGGATGTGGTGAGCCAAGCGCGCACGGCAAGTCGGGCCTTGGTCC
ACGCCGTCGGCGGGGTTGGCAGTCAGCAGCAGGGAAGGAGTGGAGATGAG
ATGTGGGACATGTTGGCGGGGCACAGCAAGGCGGTGACATCGTTGGTTTG
CTCGTGGGATGGCCGGATGACGATTTCGGCTTCTGAGGACGGGAGTTTAC
GGTGGTGGGATGTGGATAGTCAGCAGTGTGTGAAAAAGGTGAGTTTGGAT
ACCCCTGGTCCTATCACAGGCTTGCTCCTCTTGCCTCGTCCTACGGCTCT
TCTGGAGATGCTACCGAAGACTGTGCTGCCTGCGCCAATGCAGCCTTTGA
AGAAGTACAGCACGGGAGGGGAGGGCGATGGCTCAGTTTTTGTGCCGGGC
AGGAAGGAGGATGGGATGGCCCTGCCTGCTGCCTCCTCGTTCTTTTTCTC
TGTCTTGGACGACAGCGTGGTCGTGAAGGGTGCAGACGTCGATGGCATGA
AAGAGGAAGTAGTGGAAGAGGGGGAAACCAAGAAGAATGGTACGATAGGA
GATATTAAGAGGAAGCGTGTCCAAGTACCGAAATACGCGGCCCATGGTAT
TGCCAACAGCATCAAATCGCAGACGAACGTGGGAGCACCAGGACCCACGG
GAGGGTCCGCAGGGGGGAAAAGGAAGAAAGGCAGAGCGCTAAAGTAA
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Synonyms
Publications