NO07G02330.1, NO07G02330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02330.1
Unique NameNO07G02330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1681
Alignment locationchr7:688206..689886 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:688206..689886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02330.1 vs.
Match: EWM27183.1 (hypothetical protein Naga_100010g72 [Nannochloropsis gaditana])

HSP 1 Score: 162.9 bits (411), Expect = 2.500e-36
Identity = 154/438 (35.16%), Postives = 197/438 (44.98%), Query Frame = 0 
Query:    5 DTTTRLFTVLWAEDKVEEPVMPEEGLEEEEEQHWGSASS----TPHRVVFCDVDVKFKPQRAFLYRSHGFFHQVALTSTNTLSRLGQGEYELTFRQCDGYIPSPRFLRFFVGPFSTSSSSSSSPPPPTIDRSEPLYVGTIIMHELRFPFLRSLVPGLSALGAIVVTLVFGLRILQKRRSTCRIEREMKKSSTTSTSRVGSPMALS-SSFSSSCSGIQLKTKEEMSFEKEPGGAAELSSGDKDSVELLVQLPESDARPKDFPKVSPTSDTDGEESVFGGFGLS-LPQPLREKDPCYYHKHIKNLQVRQHVQYQQAEEQPVRRSPLTPYGT--PLTPQRAI---------DHPLARLPRPGSAFSISPS--SPASAFALIDSPRGAEGGEKAGPGAVPGAAAAATEDEVMMREERRRHGGDVEGEGENLGWVNEYWSLEG 424
            DTT+RLF+V WA+   +      +   ++EE   G A         R+  CDVD+K+K   A+++RSHGFF+QVALTSTNTLSRL  G Y L FRQC GY PSPR LRF V   S++S       P    + E LY+G + M +L F F RS+ PG+SA+   ++ L+FGLR LQKR+   R  R    + T ST  V S  + + SS SS+ SG+ LKT  E S E        + SG                      KV P  D     S    F  S    PLR K       H       QH     + E   R S +    T  P+  QR           D    ++  P S    SP   SP+   +   SP  +  G    P   P A A   + E   + E        EG  E LGWV EYWS EG
Sbjct:    7 DTTSRLFSVRWADRTGDNTAQDHK---KQEEVGRGEAMDGEEVVSRRITLCDVDIKYKSPAAYVFRSHGFFYQVALTSTNTLSRLNPGTYVLNFRQCQGYKPSPRSLRFHVPALSSTSF------PLFALKDEDLYIGVVTMQKLHFQFPRSVAPGVSAIVVAILALLFGLRTLQKRQKP-RSRRATSSAPTISTPVVTSESSFNLSSSSSATSGLALKTSGETSQEDH----LAVGSG----------------------KVPPVWDLSRHGSSKNVFSSSHAGDPLRSKSI-----HELEQSYAQHEDEALSHEARERPSGVEKPRTTAPMYQQRQTMRNVEVNGRDSYPPKIYIPSSTLICSPPLPSPSELASTTSSPPSSAVGSSE-PAPRPPAEATCFDGEAGGQGEAEVTN---EGNEETLGWVEEYWSFEG 399
The following BLAST results are available for this feature:
BLAST of NO07G02330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27183.12.500e-3635.16hypothetical protein Naga_100010g72 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02330NO07G02330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02330.1NO07G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02330.1.cds1NO07G02330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02330.1 ID=NO07G02330.1|Name=NO07G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp
AACATCAGGGAATAAATCAAGCTTTACAGCGATAGCAGCTACAGCAAGCG
CATAACCCTGCCATGGCCGTAGATGACACGACCACTCGTCTTTTCACTGT
CCTATGGGCTGAAGATAAGGTAGAGGAACCCGTGATGCCCGAGGAGGGGC
TGGAGGAGGAGGAGGAGCAACACTGGGGGTCGGCTTCCTCTACGCCGCAC
CGCGTGGTCTTCTGTGATGTTGATGTCAAATTCAAGCCGCAAAGGGCCTT
TCTCTACCGATCGCATGGCTTTTTTCACCAGGTGGCCCTGACGTCGACTA
ACACGCTCTCTAGACTGGGTCAAGGAGAGTACGAACTCACCTTCCGTCAA
TGCGATGGGTATATCCCCTCGCCGCGCTTTCTCCGCTTTTTCGTGGGGCC
CTTCTCAACCTCATCCTCCTCCTCAAGCTCCCCTCCCCCTCCTACCATCG
ACCGTAGCGAGCCCCTCTATGTTGGCACCATAATCATGCACGAGCTGCGC
TTTCCATTCCTCCGCTCTCTCGTCCCTGGTTTAAGTGCCCTAGGAGCCAT
AGTGGTCACCCTCGTGTTTGGTCTCCGAATTTTGCAGAAAAGGCGCAGCA
CATGTCGAATCGAAAGGGAAATGAAGAAATCTTCAACCACCAGCACCTCC
CGGGTAGGCTCTCCGATGGCACTCTCCTCTTCCTTTTCCTCCTCATGCTC
CGGAATCCAGCTCAAGACGAAGGAGGAAATGTCTTTTGAGAAGGAGCCAG
GAGGAGCAGCAGAATTGTCATCAGGAGATAAGGACAGCGTCGAGCTGCTG
GTGCAGCTGCCGGAAAGTGACGCGCGGCCGAAGGATTTCCCGAAAGTGTC
CCCCACCTCTGACACAGACGGAGAGGAAAGCGTCTTTGGGGGTTTCGGGT
TGAGTCTGCCGCAGCCACTGCGAGAGAAAGACCCTTGCTATTACCACAAG
CACATCAAAAACCTGCAGGTCCGTCAACACGTGCAGTATCAGCAGGCAGA
AGAACAGCCGGTGCGCCGTTCTCCTCTGACTCCTTATGGCACACCTCTGA
CTCCTCAGAGGGCAATCGACCACCCGCTCGCTCGGCTCCCGCGCCCGGGA
TCTGCATTTTCCATATCACCCTCCTCTCCGGCCTCGGCTTTTGCGCTGAT
TGATTCGCCGAGAGGCGCGGAAGGAGGAGAAAAAGCAGGGCCAGGAGCAG
TGCCAGGAGCAGCAGCGGCAGCAACGGAAGATGAGGTGATGATGCGCGAA
GAGAGACGGCGACATGGAGGAGACGTAGAGGGGGAGGGAGAAAACTTGGG
GTGGGTGAATGAGTACTGGTCGTTGGAGGGATCGGCATCTTGCAGGAGAT
CGTGGACGAGAGATGAGGAGGAAAGCCCGAGGGGAGGGTTGGAGAAGGCG
GAGGCAACGGAGGAGGGAGGGGGACAGGAAGGGCAGGATGTTGCCCGTTT
CCTAAAGCGAACGGGTGAGGATGCAGAGCAGGGCGATAGGGTGGAGCGCT
GGTTTAAAGACGGAAGCAAGCAAGAAGAGGACTGAGGAAGATGTGTAAGT
TTCAACTGGGCGAACGGGCGATAGAGAGAGAGTGTCTTGTGTATCCCACG
ATGACACGCAGAAAGACAAAAGAGAAAGACACAGATCATAACCAAACGGA
TGTGATAAAATGAACTTCAAAAAATGTGGAT
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protein sequence of NO07G02330.1

>NO07G02330.1-protein ID=NO07G02330.1-protein|Name=NO07G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MAVDDTTTRLFTVLWAEDKVEEPVMPEEGLEEEEEQHWGSASSTPHRVVF
CDVDVKFKPQRAFLYRSHGFFHQVALTSTNTLSRLGQGEYELTFRQCDGY
IPSPRFLRFFVGPFSTSSSSSSSPPPPTIDRSEPLYVGTIIMHELRFPFL
RSLVPGLSALGAIVVTLVFGLRILQKRRSTCRIEREMKKSSTTSTSRVGS
PMALSSSFSSSCSGIQLKTKEEMSFEKEPGGAAELSSGDKDSVELLVQLP
ESDARPKDFPKVSPTSDTDGEESVFGGFGLSLPQPLREKDPCYYHKHIKN
LQVRQHVQYQQAEEQPVRRSPLTPYGTPLTPQRAIDHPLARLPRPGSAFS
ISPSSPASAFALIDSPRGAEGGEKAGPGAVPGAAAAATEDEVMMREERRR
HGGDVEGEGENLGWVNEYWSLEGSASCRRSWTRDEEESPRGGLEKAEATE
EGGGQEGQDVARFLKRTGEDAEQGDRVERWFKDGSKQEED*
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mRNA from alignment at chr7:688206..689886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02330.1 ID=NO07G02330.1|Name=NO07G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp|location=Sequence derived from alignment at chr7:688206..689886- (Nannochloropsis oceanica)
AACATCAGGGAATAAATCAAGCTTTACAGCGATAGCAGCTACAGCAAGCG
CATAACCCTGCCATGGCCGTAGATGACACGACCACTCGTCTTTTCACTGT
CCTATGGGCTGAAGATAAGGTAGAGGAACCCGTGATGCCCGAGGAGGGGC
TGGAGGAGGAGGAGGAGCAACACTGGGGGTCGGCTTCCTCTACGCCGCAC
CGCGTGGTCTTCTGTGATGTTGATGTCAAATTCAAGCCGCAAAGGGCCTT
TCTCTACCGATCGCATGGCTTTTTTCACCAGGTGGCCCTGACGTCGACTA
ACACGCTCTCTAGACTGGGTCAAGGAGAGTACGAACTCACCTTCCGTCAA
TGCGATGGGTATATCCCCTCGCCGCGCTTTCTCCGCTTTTTCGTGGGGCC
CTTCTCAACCTCATCCTCCTCCTCAAGCTCCCCTCCCCCTCCTACCATCG
ACCGTAGCGAGCCCCTCTATGTTGGCACCATAATCATGCACGAGCTGCGC
TTTCCATTCCTCCGCTCTCTCGTCCCTGGTTTAAGTGCCCTAGGAGCCAT
AGTGGTCACCCTCGTGTTTGGTCTCCGAATTTTGCAGAAAAGGCGCAGCA
CATGTCGAATCGAAAGGGAAATGAAGAAATCTTCAACCACCAGCACCTCC
CGGGTAGGCTCTCCGATGGCACTCTCCTCTTCCTTTTCCTCCTCATGCTC
CGGAATCCAGCTCAAGACGAAGGAGGAAATGTCTTTTGAGAAGGAGCCAG
GAGGAGCAGCAGAATTGTCATCAGGAGATAAGGACAGCGTCGAGCTGCTG
GTGCAGCTGCCGGAAAGTGACGCGCGGCCGAAGGATTTCCCGAAAGTGTC
CCCCACCTCTGACACAGACGGAGAGGAAAGCGTCTTTGGGGGTTTCGGGT
TGAGTCTGCCGCAGCCACTGCGAGAGAAAGACCCTTGCTATTACCACAAG
CACATCAAAAACCTGCAGGTCCGTCAACACGTGCAGTATCAGCAGGCAGA
AGAACAGCCGGTGCGCCGTTCTCCTCTGACTCCTTATGGCACACCTCTGA
CTCCTCAGAGGGCAATCGACCACCCGCTCGCTCGGCTCCCGCGCCCGGGA
TCTGCATTTTCCATATCACCCTCCTCTCCGGCCTCGGCTTTTGCGCTGAT
TGATTCGCCGAGAGGCGCGGAAGGAGGAGAAAAAGCAGGGCCAGGAGCAG
TGCCAGGAGCAGCAGCGGCAGCAACGGAAGATGAGGTGATGATGCGCGAA
GAGAGACGGCGACATGGAGGAGACGTAGAGGGGGAGGGAGAAAACTTGGG
GTGGGTGAATGAGTACTGGTCGTTGGAGGGATCGGCATCTTGCAGGAGAT
CGTGGACGAGAGATGAGGAGGAAAGCCCGAGGGGAGGGTTGGAGAAGGCG
GAGGCAACGGAGGAGGGAGGGGGACAGGAAGGGCAGGATGTTGCCCGTTT
CCTAAAGCGAACGGGTGAGGATGCAGAGCAGGGCGATAGGGTGGAGCGCT
GGTTTAAAGACGGAAGCAAGCAAGAAGAGGACTGAGGAAGATGTGTAAGT
TTCAACTGGGCGAACGGGCGATAGAGAGAGAGTGTCTTGTGTATCCCACG
ATGACACGCAGAAAGACAAAAGAGAAAGACACAGATCATAACCAAACGGA
TGTGATAAAATGAACTTCAAAAAATGTGGAT
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Coding sequence (CDS) from alignment at chr7:688206..689886-

>NO07G02330.1 ID=NO07G02330.1|Name=NO07G02330.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr7:688206..689886- (Nannochloropsis oceanica)
ATGGCCGTAGATGACACGACCACTCGTCTTTTCACTGTCCTATGGGCTGA
AGATAAGGTAGAGGAACCCGTGATGCCCGAGGAGGGGCTGGAGGAGGAGG
AGGAGCAACACTGGGGGTCGGCTTCCTCTACGCCGCACCGCGTGGTCTTC
TGTGATGTTGATGTCAAATTCAAGCCGCAAAGGGCCTTTCTCTACCGATC
GCATGGCTTTTTTCACCAGGTGGCCCTGACGTCGACTAACACGCTCTCTA
GACTGGGTCAAGGAGAGTACGAACTCACCTTCCGTCAATGCGATGGGTAT
ATCCCCTCGCCGCGCTTTCTCCGCTTTTTCGTGGGGCCCTTCTCAACCTC
ATCCTCCTCCTCAAGCTCCCCTCCCCCTCCTACCATCGACCGTAGCGAGC
CCCTCTATGTTGGCACCATAATCATGCACGAGCTGCGCTTTCCATTCCTC
CGCTCTCTCGTCCCTGGTTTAAGTGCCCTAGGAGCCATAGTGGTCACCCT
CGTGTTTGGTCTCCGAATTTTGCAGAAAAGGCGCAGCACATGTCGAATCG
AAAGGGAAATGAAGAAATCTTCAACCACCAGCACCTCCCGGGTAGGCTCT
CCGATGGCACTCTCCTCTTCCTTTTCCTCCTCATGCTCCGGAATCCAGCT
CAAGACGAAGGAGGAAATGTCTTTTGAGAAGGAGCCAGGAGGAGCAGCAG
AATTGTCATCAGGAGATAAGGACAGCGTCGAGCTGCTGGTGCAGCTGCCG
GAAAGTGACGCGCGGCCGAAGGATTTCCCGAAAGTGTCCCCCACCTCTGA
CACAGACGGAGAGGAAAGCGTCTTTGGGGGTTTCGGGTTGAGTCTGCCGC
AGCCACTGCGAGAGAAAGACCCTTGCTATTACCACAAGCACATCAAAAAC
CTGCAGGTCCGTCAACACGTGCAGTATCAGCAGGCAGAAGAACAGCCGGT
GCGCCGTTCTCCTCTGACTCCTTATGGCACACCTCTGACTCCTCAGAGGG
CAATCGACCACCCGCTCGCTCGGCTCCCGCGCCCGGGATCTGCATTTTCC
ATATCACCCTCCTCTCCGGCCTCGGCTTTTGCGCTGATTGATTCGCCGAG
AGGCGCGGAAGGAGGAGAAAAAGCAGGGCCAGGAGCAGTGCCAGGAGCAG
CAGCGGCAGCAACGGAAGATGAGGTGATGATGCGCGAAGAGAGACGGCGA
CATGGAGGAGACGTAGAGGGGGAGGGAGAAAACTTGGGGTGGGTGAATGA
GTACTGGTCGTTGGAGGGATCGGCATCTTGCAGGAGATCGTGGACGAGAG
ATGAGGAGGAAAGCCCGAGGGGAGGGTTGGAGAAGGCGGAGGCAACGGAG
GAGGGAGGGGGACAGGAAGGGCAGGATGTTGCCCGTTTCCTAAAGCGAAC
GGGTGAGGATGCAGAGCAGGGCGATAGGGTGGAGCGCTGGTTTAAAGACG
GAAGCAAGCAAGAAGAGGACTGA
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Synonyms
Publications