NO07G02280.1, NO07G02280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02280.1
Unique NameNO07G02280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1501
Alignment locationchr7:676852..678593 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:676852..678593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02280.1 vs.
Match: EWM27157.1 (histone chaperone [Nannochloropsis gaditana])

HSP 1 Score: 356.3 bits (913), Expect = 7.900e-95
Identity = 192/243 (79.01%), Postives = 213/243 (87.65%), Query Frame = 0 
Query:    1 MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAENAEQDQVLEEVMVGPVPVGVNKFVLQSEPPDVSRIPEEDIIGVTVILITCSYREQEFVRVGYYVNNEYAEAFDPENPPRPVDLGKLVRNILADKPRVTRFPVDWGLGAGVEGGQQPQVTEEEAAAEGVVDFDALDQQA-GDEDEEEEGGEDGDGDEDRDV-GEEDSDEPGGLHEGGAMDMEMVSPAFKGSVARG 242
            MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAENA+QDQVLEEVMVGPVPVGVNKFVLQS  PDVS+IPEEDIIGVTVILITC+YREQEFVRVGYYVNNEYAE FDP++PPRPVDL KLVRNILADKPRVTRFP+DWG+G GVEGGQQ QVTEEEAAAEGVVDFDALDQQ  G+E+E EE  E+ + ++DR++ G E+S+E   +    AM ME+ SP  +  +  G
Sbjct:    1 MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAENADQDQVLEEVMVGPVPVGVNKFVLQSAAPDVSQIPEEDIIGVTVILITCTYREQEFVRVGYYVNNEYAEPFDPDHPPRPVDLLKLVRNILADKPRVTRFPIDWGMGMGVEGGQQQQVTEEEAAAEGVVDFDALDQQQDGEEEEGEEEEEEEEAEDDRELEGGEESEEGSVVQGDDAMAMELSSPVPRAQMREG 243
The following BLAST results are available for this feature:
BLAST of NO07G02280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27157.17.900e-9579.01histone chaperone [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02280NO07G02280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02280.1NO07G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02280.1.cds1NO07G02280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02280.1.cds2NO07G02280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02280.1 ID=NO07G02280.1|Name=NO07G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp
CGGGAAGCCACCAAAGGCCTTCCCGCGGCATGCTTTGCCAGCGGGTAGTC
TGGTCTGTAACTCATGGCCTTGCCTTCTCATCCTTTATTTGAGACCAATA
AACAACGGTCATCTCCCTCGCGCTCGCCACCGTGTGTATCAGACGTCCCA
TTGCGAGTGTGTTACCTTCTCTTTCCTTTGCCTATGGCCTTAATACTGCC
CGCCAAGAGTGCAAGCCCGCCCCCCCCCTTGCCCCATAACCACCACGACA
ATCCCCAGGGCTTTGTCCTACTCCGCCACTATGGTAGGTCCTCGTTCTCG
CCACCCAAGTCACCATTCCCACCGTTCCTTTCCCGCACAGTGGCTTTTTC
TTCCCTCCACACATAATGGCGCTCGTAAACTTGACCAACATCGTGGTGCT
GGACAACCCCACCAGCTTCACGAACCCCTTCACATTCGAGGTCACCTTTG
AGTGCGTGCAAGAGCTCGAAGACGACTTGGAATGGAAGGTGCTCTACGTT
TCATCGGCGGAAAATGCGGAGCAGGACCAGGTACTGGAGGAAGTGATGGT
CGGCCCCGTGCCCGTGGGTGTGAACAAATTCGTGCTGCAATCGGAGCCCC
CGGACGTGAGTCGTATTCCCGAGGAAGACATCATCGGCGTGACCGTCATC
CTCATAACCTGCTCCTACCGCGAGCAAGAATTTGTCCGCGTCGGCTACTA
CGTCAACAACGAGTACGCGGAGGCATTTGATCCTGAAAACCCTCCACGGC
CCGTGGATCTGGGAAAGCTGGTGCGTAACATTCTTGCTGACAAGCCACGT
GTTACGCGCTTCCCGGTCGACTGGGGCCTGGGTGCGGGGGTGGAAGGCGG
GCAACAACCGCAGGTCACGGAGGAGGAGGCGGCCGCGGAGGGGGTGGTGG
ATTTCGACGCGCTGGACCAGCAGGCTGGGGATGAGGACGAGGAAGAGGAA
GGCGGGGAGGACGGAGACGGGGACGAGGATCGGGACGTGGGGGAGGAGGA
CAGTGACGAGCCCGGGGGGTTGCATGAGGGGGGGGCGATGGACATGGAGA
TGGTGTCGCCCGCTTTTAAAGGCTCGGTGGCACGGGGAGACAGCATGTCA
GAGTCCCCCCCTCTTTACGCGGCTTCATCGTGACTTATTTGTCGCTGAAG
CTGAAATGTACGAGAGCGAAGAGGAAATGATTAGGAGAACGAAGAGAGAA
GAGATGAAAAGTAGTGTTGGGACGAGAGGAAAGCTGAAGATGATGTGGTC
GGCGTGTTTATATCAGGGAGAGAAGAAGAAACCGAAAGTCAGAAGGAAAA
AAGGGTAAAGAAATGTGATGGGATAGTGTGACAAGAAGGAAAGATGAAGG
ACATTTGTGTGCGGATCAGACAAGCAAGAAGAGTGCAGGAGATGGGAGAG
GCACGTGCCGTACCCGAAATTGCAGCTCATGACAACGAACGGCTCACCCA
TCAAGAGTAAAGAATAGAACCGTGTGTGTAATTTCTTACCACATCTTAAA
C
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protein sequence of NO07G02280.1

>NO07G02280.1-protein ID=NO07G02280.1-protein|Name=NO07G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAEN
AEQDQVLEEVMVGPVPVGVNKFVLQSEPPDVSRIPEEDIIGVTVILITCS
YREQEFVRVGYYVNNEYAEAFDPENPPRPVDLGKLVRNILADKPRVTRFP
VDWGLGAGVEGGQQPQVTEEEAAAEGVVDFDALDQQAGDEDEEEEGGEDG
DGDEDRDVGEEDSDEPGGLHEGGAMDMEMVSPAFKGSVARGDSMSESPPL
YAASS*
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mRNA from alignment at chr7:676852..678593-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02280.1 ID=NO07G02280.1|Name=NO07G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1742bp|location=Sequence derived from alignment at chr7:676852..678593- (Nannochloropsis oceanica)
CGGGAAGCCACCAAAGGCCTTCCCGCGGCATGCTTTGCCAGCGGGTAGTC
TGGTCTGTAACTCATGGCCTTGCCTTCTCATCCTTTATTTGAGACCAATA
AACAACGGTCATCTCCCTCGCGCTCGCCACCGTGTGTATCAGACGTCCCA
TTGCGAGTGTGTTACCTTCTCTTTCCTTTGCCTATGGCCTTAATACTGCC
CGCCAAGAGTGCAAGCCCGCCCCCCCCCTTGCCCCATAACCACCACGACA
ATCCCCAGGGCTTTGTCCTACTCCGCCACTATGGTAGGTCCTCGTTCTCG
CCACCCAAGTCACCATTCCCACCGTTCCTTTCCCGCACAGTGGCTTTTTC
TTCCCTCCACACATAATGGCGCTCGTAAACTTGACCAACATCGTGGTGCT
GGACAACCCCACCAGCTTCACGAACCCCTTCACATTCGAGGTCACCTTTG
AGTGCGTGCAAGAGCTCGAAGACGGTATGTGGCTTGGTGGTATGTGTGTG
TGTCAGAGGGGAGGGGGGTTGTAATATTTTGAGTAGAGACAATCTCGTGG
GAACGGAGGGTCTTCCTTCAGGGCAGGACTTTTCCCTGGTTCCCTTCGAG
CCCACGCGTGTGCAACCCTCTCTCTATCCAGTTGTATCTCTTTTAAGCAA
GCACTACATGTCGGTTCTGCCGCTTTCACCATCTTGTCCTCATTTCCTAC
CCACCCAACCCTCAGACTTGGAATGGAAGGTGCTCTACGTTTCATCGGCG
GAAAATGCGGAGCAGGACCAGGTACTGGAGGAAGTGATGGTCGGCCCCGT
GCCCGTGGGTGTGAACAAATTCGTGCTGCAATCGGAGCCCCCGGACGTGA
GTCGTATTCCCGAGGAAGACATCATCGGCGTGACCGTCATCCTCATAACC
TGCTCCTACCGCGAGCAAGAATTTGTCCGCGTCGGCTACTACGTCAACAA
CGAGTACGCGGAGGCATTTGATCCTGAAAACCCTCCACGGCCCGTGGATC
TGGGAAAGCTGGTGCGTAACATTCTTGCTGACAAGCCACGTGTTACGCGC
TTCCCGGTCGACTGGGGCCTGGGTGCGGGGGTGGAAGGCGGGCAACAACC
GCAGGTCACGGAGGAGGAGGCGGCCGCGGAGGGGGTGGTGGATTTCGACG
CGCTGGACCAGCAGGCTGGGGATGAGGACGAGGAAGAGGAAGGCGGGGAG
GACGGAGACGGGGACGAGGATCGGGACGTGGGGGAGGAGGACAGTGACGA
GCCCGGGGGGTTGCATGAGGGGGGGGCGATGGACATGGAGATGGTGTCGC
CCGCTTTTAAAGGCTCGGTGGCACGGGGAGACAGCATGTCAGAGTCCCCC
CCTCTTTACGCGGCTTCATCGTGACTTATTTGTCGCTGAAGCTGAAATGT
ACGAGAGCGAAGAGGAAATGATTAGGAGAACGAAGAGAGAAGAGATGAAA
AGTAGTGTTGGGACGAGAGGAAAGCTGAAGATGATGTGGTCGGCGTGTTT
ATATCAGGGAGAGAAGAAGAAACCGAAAGTCAGAAGGAAAAAAGGGTAAA
GAAATGTGATGGGATAGTGTGACAAGAAGGAAAGATGAAGGACATTTGTG
TGCGGATCAGACAAGCAAGAAGAGTGCAGGAGATGGGAGAGGCACGTGCC
GTACCCGAAATTGCAGCTCATGACAACGAACGGCTCACCCATCAAGAGTA
AAGAATAGAACCGTGTGTGTAATTTCTTACCACATCTTAAAC
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Coding sequence (CDS) from alignment at chr7:676852..678593-

>NO07G02280.1 ID=NO07G02280.1|Name=NO07G02280.1|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr7:676852..678593- (Nannochloropsis oceanica)
ATGGCGCTCGTAAACTTGACCAACATCGTGGTGCTGGACAACCCCACCAG
CTTCACGAACCCCTTCACATTCGAGGTCACCTTTGAGTGCGTGCAAGAGC
TCGAAGACGACTTGGAATGGAAGGTGCTCTACGTTTCATCGGCGGAAAAT
GCGGAGCAGGACCAGGTACTGGAGGAAGTGATGGTCGGCCCCGTGCCCGT
GGGTGTGAACAAATTCGTGCTGCAATCGGAGCCCCCGGACGTGAGTCGTA
TTCCCGAGGAAGACATCATCGGCGTGACCGTCATCCTCATAACCTGCTCC
TACCGCGAGCAAGAATTTGTCCGCGTCGGCTACTACGTCAACAACGAGTA
CGCGGAGGCATTTGATCCTGAAAACCCTCCACGGCCCGTGGATCTGGGAA
AGCTGGTGCGTAACATTCTTGCTGACAAGCCACGTGTTACGCGCTTCCCG
GTCGACTGGGGCCTGGGTGCGGGGGTGGAAGGCGGGCAACAACCGCAGGT
CACGGAGGAGGAGGCGGCCGCGGAGGGGGTGGTGGATTTCGACGCGCTGG
ACCAGCAGGCTGGGGATGAGGACGAGGAAGAGGAAGGCGGGGAGGACGGA
GACGGGGACGAGGATCGGGACGTGGGGGAGGAGGACAGTGACGAGCCCGG
GGGGTTGCATGAGGGGGGGGCGATGGACATGGAGATGGTGTCGCCCGCTT
TTAAAGGCTCGGTGGCACGGGGAGACAGCATGTCAGAGTCCCCCCCTCTT
TACGCGGCTTCATCGTGA
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Synonyms
Publications